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1. Oxidoreductases
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2. Transferases
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3. Hydrolases
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3.1 Acting on ester bonds
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3.2 Glycosylases
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3.3 Acting on ether bonds
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3.4 Acting on peptide bonds (peptidases)
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3.4.11 Aminopeptidases
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3.4.13 Dipeptidases
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3.4.14 Dipeptidyl-peptidases and tripeptidyl-peptidases
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3.4.15 Peptidyl-dipeptidases
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3.4.16 Serine-type carboxypeptidases
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3.4.17 Metallocarboxypeptidases
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3.4.18 Cysteine-type carboxypeptidases
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3.4.19 Omega peptidases
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3.4.19.1 acylaminoacyl-peptidase
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3.4.19.2 peptidyl-glycinamidase
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3.4.19.3 pyroglutamyl-peptidase I
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3.4.19.5 beta-aspartyl-peptidase
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3.4.19.6 pyroglutamyl-peptidase II
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3.4.19.7 N-formylmethionyl-peptidase
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3.4.19.9 folate gamma-glutamyl hydrolase
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3.4.19.11 gamma-D-glutamyl-meso-diaminopimelate peptidase
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3.4.19.12 ubiquitinyl hydrolase 1
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Chro.10139 UCHL5 protein
Chro.80372 ubiquitin carboxy-terminal hydrolase L1; gracile axonal dystrophy; protein gene product 9.5
Chro.80498 hypothetical protein
Chro.20366 ubiquitin specific protease 66
Chro.60521 ubiquitin-specific protease
Chro.80181 ubiquitin carboxyl-terminal hydrolase
Chro.10040 tRNA-guaninine transglycosylase
Chro.60317 cysteine protease
Chro.20081 hypothetical protein
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K05610 UCHL5; ubiquitin carboxyl-terminal hydrolase L5 [EC:3.4.19.12]
K05611 UCHL1; ubiquitin carboxyl-terminal hydrolase L1 [EC:3.4.19.12]
K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
K11833 USP2; ubiquitin carboxyl-terminal hydrolase 2 [EC:3.4.19.12]
K11836 USP5_13; ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.4.19.12]
K11838 USP7; ubiquitin carboxyl-terminal hydrolase 7 [EC:3.4.19.12]
K11843 USP14; ubiquitin carboxyl-terminal hydrolase 14 [EC:3.4.19.12]
K12655 OTUD5; OTU domain-containing protein 5 [EC:3.4.19.12]
K22763 DESI2; deubiquitinase DESI2 [EC:3.4.19.12]
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3.4.19.13 glutathione gamma-glutamate hydrolase
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3.4.19.14 leukotriene-C4 hydrolase
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3.4.19.15 desampylase
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3.4.19.16 glucosinolate gamma-glutamyl hydrolase
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3.4.21 Serine endopeptidases
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3.4.22 Cysteine endopeptidases
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3.4.23 Aspartic endopeptidases
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3.4.24 Metalloendopeptidases
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3.4.25 Threonine endopeptidases
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3.4.26 Glutamic endopeptidases
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3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
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3.6 Acting on acid anhydrides
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3.7 Acting on carbon-carbon bonds
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3.8 Acting on halide bonds
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3.9 Acting on phosphorus-nitrogen bonds
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3.10 Acting on sulfur-nitrogen bonds
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3.11 Acting on carbon-phosphorus bonds
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3.12 Acting on sulfur-sulfur bonds
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3.13 Acting on carbon-sulfur bonds
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4. Lyases
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5. Isomerases
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6. Ligases
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7. Translocases
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