KEGG Orthology (KO) - Caldicellulosiruptor acetigenus I77R1B

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:cki03030]
     03410 Base excision repair [PATH:cki03410]
     03420 Nucleotide excision repair [PATH:cki03420]
     03430 Mismatch repair [PATH:cki03430]
     03440 Homologous recombination [PATH:cki03440]
       Calkr_1505 single-stranded-DNA-specific exonuclease RecJ
       Calkr_0488 single-strand binding protein
       Calkr_2097 single-strand binding protein
       Calkr_0003 DNA replication and repair protein RecF
       Calkr_1396 DNA repair protein RecO
       Calkr_1127 recombination protein RecR
       Calkr_0972 recA protein
       Calkr_1426 DNA polymerase I
       Calkr_1096 Holliday junction DNA helicase RuvA
       Calkr_1097 Holliday junction DNA helicase RuvB
       Calkr_1095 crossover junction endodeoxyribonuclease RuvC
       Calkr_0632 putative transcriptional regulator
       Calkr_1205 ATP-dependent DNA helicase RecG
       Calkr_1913 putative transcriptional regulator
       Calkr_2565 helicase, RecD/TraA family
       Calkr_1243 DNA polymerase III, alpha subunit
       Calkr_0866 DNA polymerase III, alpha subunit
       Calkr_0002 DNA polymerase III, beta subunit
       Calkr_0474 DNA polymerase III, subunits gamma and tau
       Calkr_0780 DNA polymerase III, delta subunit
       Calkr_1806 DNA-directed DNA polymerase
       Calkr_1027 primosomal protein N'
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
     03450 Non-homologous end-joining
     03460 Fanconi anemia pathway
 
   09126 Chromosome
 
   09125 Information processing in viruses
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:cki03000]
     03021 Transcription machinery [BR:cki03021]
     03019 Messenger RNA biogenesis [BR:cki03019]
     03041 Spliceosome
     03011 Ribosome [BR:cki03011]
     03009 Ribosome biogenesis [BR:cki03009]
     03016 Transfer RNA biogenesis [BR:cki03016]
     03012 Translation factors [BR:cki03012]
     03110 Chaperones and folding catalysts [BR:cki03110]
     04131 Membrane trafficking [BR:cki04131]
     04121 Ubiquitin system
     03051 Proteasome
     03032 DNA replication proteins [BR:cki03032]
     03036 Chromosome and associated proteins [BR:cki03036]
     03400 DNA repair and recombination proteins [BR:cki03400]
       Calkr_2208 methylated-DNA/protein-cysteine methyltransferase
       Calkr_2127 helix-hairpin-helix motif protein
       Calkr_2642 HhH-GPD family protein
       Calkr_1054 8-oxoguanine DNA glycosylase domain-containing protein
       Calkr_1453 endonuclease III
       Calkr_1403 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
       Calkr_0835 phage SPO1 DNA polymerase-related protein
       Calkr_1713 Xylose isomerase domain-containing protein TIM barrel
       Calkr_1505 single-stranded-DNA-specific exonuclease RecJ
       Calkr_1631 DNA ligase, NAD-dependent
       Calkr_1426 DNA polymerase I
       Calkr_1422 excinuclease ABC, A subunit
       Calkr_1423 excinuclease ABC, B subunit
       Calkr_0316 excinuclease ABC, C subunit
       Calkr_1270 UvrD/REP helicase
       Calkr_2500 LexA repressor
       Calkr_2586 hypothetical protein
       Calkr_1907 DNA-directed RNA polymerase, beta subunit
       Calkr_1906 DNA-directed RNA polymerase, beta' subunit
       Calkr_1732 DNA-directed RNA polymerase, alpha subunit
       Calkr_1025 DNA-directed RNA polymerase, omega subunit
       Calkr_0596 transcription-repair coupling factor
       Calkr_1485 DNA mismatch repair protein MutS
       Calkr_1654 MutS2 family protein
       Calkr_1484 DNA mismatch repair protein MutL
       Calkr_0988 exodeoxyribonuclease VII, large subunit
       Calkr_0989 exodeoxyribonuclease VII, small subunit
       Calkr_1243 DNA polymerase III, alpha subunit
       Calkr_0866 DNA polymerase III, alpha subunit
       Calkr_0002 DNA polymerase III, beta subunit
       Calkr_0780 DNA polymerase III, delta subunit
       Calkr_1806 DNA-directed DNA polymerase
       Calkr_0474 DNA polymerase III, subunits gamma and tau
       Calkr_0488 single-strand binding protein
       Calkr_2097 single-strand binding protein
       Calkr_1613 DNA adenine methylase
       Calkr_2088 D12 class N6 adenine-specific DNA methyltransferase
       Calkr_2565 helicase, RecD/TraA family
       Calkr_0972 recA protein
       Calkr_1096 Holliday junction DNA helicase RuvA
       Calkr_1097 Holliday junction DNA helicase RuvB
       Calkr_1095 crossover junction endodeoxyribonuclease RuvC
       Calkr_2094 endodeoxyribonuclease RusA
       Calkr_1027 primosomal protein N'
       Calkr_1125 SMC domain protein
       Calkr_1124 nuclease SbcCD, D subunit
       Calkr_0499 DNA repair protein RadA
       Calkr_0003 DNA replication and repair protein RecF
       Calkr_0632 putative transcriptional regulator
       Calkr_1205 ATP-dependent DNA helicase RecG
       Calkr_1913 putative transcriptional regulator
       Calkr_1396 DNA repair protein RecO
       Calkr_1127 recombination protein RecR
       Calkr_1322 DNA repair protein RecN
       Calkr_0306 UvrD/REP helicase
       Calkr_0305 hypothetical protein
       Calkr_2417 CRISPR-associated protein Cas1
       Calkr_2577 CRISPR-associated protein Cas1
       Calkr_2531 CRISPR-associated protein Cas1
       Calkr_0007 DNA gyrase, A subunit
       Calkr_0005 DNA gyrase, B subunit
       Calkr_0398 DNA topoisomerase I
       Calkr_0606 histone family protein DNA-binding protein
       Calkr_1620 DEAD/DEAH box helicase domain protein
       Calkr_2337 DNA-directed DNA polymerase
       Calkr_1480 transcriptional repressor, LexA family
       Calkr_2090 transcriptional repressor, LexA family
       Calkr_0973 hypothetical protein
       Calkr_1679 DEAD/DEAH box helicase domain protein
       Calkr_1042 phosphoesterase RecJ domain protein
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
     03029 Mitochondrial biogenesis [BR:cki03029]
 
   09183 Protein families: signaling and cellular processes
 
   09185 Viral protein families
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: March 26, 2024