|
KO |
09100 Metabolism
|
|
|
09120 Genetic Information Processing
|
|
|
09121 Transcription
|
|
|
09122 Translation
|
|
|
09123 Folding, sorting and degradation
|
|
|
09124 Replication and repair
|
03030 DNA replication [PATH:cki03030]
|
03410 Base excision repair [PATH:cki03410]
|
03420 Nucleotide excision repair [PATH:cki03420]
|
03430 Mismatch repair [PATH:cki03430]
|
03440 Homologous recombination [PATH:cki03440]
|
Calkr_1505 single-stranded-DNA-specific exonuclease RecJ
Calkr_0488 single-strand binding protein
Calkr_2097 single-strand binding protein
Calkr_0003 DNA replication and repair protein RecF
Calkr_1396 DNA repair protein RecO
Calkr_1127 recombination protein RecR
Calkr_0972 recA protein
Calkr_1426 DNA polymerase I
Calkr_1096 Holliday junction DNA helicase RuvA
Calkr_1097 Holliday junction DNA helicase RuvB
Calkr_1095 crossover junction endodeoxyribonuclease RuvC
Calkr_0632 putative transcriptional regulator
Calkr_1205 ATP-dependent DNA helicase RecG
Calkr_1913 putative transcriptional regulator
Calkr_2565 helicase, RecD/TraA family
Calkr_1243 DNA polymerase III, alpha subunit
Calkr_0866 DNA polymerase III, alpha subunit
Calkr_0002 DNA polymerase III, beta subunit
Calkr_0474 DNA polymerase III, subunits gamma and tau
Calkr_0780 DNA polymerase III, delta subunit
Calkr_1806 DNA-directed DNA polymerase
Calkr_1027 primosomal protein N'
|
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
|
03450 Non-homologous end-joining
|
03460 Fanconi anemia pathway
|
|
|
09126 Chromosome
|
|
|
09125 Information processing in viruses
|
|
|
09130 Environmental Information Processing
|
|
|
09140 Cellular Processes
|
|
|
09150 Organismal Systems
|
|
|
09160 Human Diseases
|
|
|
09180 Brite Hierarchies
|
|
|
09181 Protein families: metabolism
|
|
|
09182 Protein families: genetic information processing
|
03000 Transcription factors [BR:cki03000]
|
03021 Transcription machinery [BR:cki03021]
|
03019 Messenger RNA biogenesis [BR:cki03019]
|
03041 Spliceosome
|
03011 Ribosome [BR:cki03011]
|
03009 Ribosome biogenesis [BR:cki03009]
|
03016 Transfer RNA biogenesis [BR:cki03016]
|
03012 Translation factors [BR:cki03012]
|
03110 Chaperones and folding catalysts [BR:cki03110]
|
04131 Membrane trafficking [BR:cki04131]
|
04121 Ubiquitin system
|
03051 Proteasome
|
03032 DNA replication proteins [BR:cki03032]
|
03036 Chromosome and associated proteins [BR:cki03036]
|
03400 DNA repair and recombination proteins [BR:cki03400]
|
Calkr_2208 methylated-DNA/protein-cysteine methyltransferase
Calkr_2127 helix-hairpin-helix motif protein
Calkr_2642 HhH-GPD family protein
Calkr_1054 8-oxoguanine DNA glycosylase domain-containing protein
Calkr_1453 endonuclease III
Calkr_1403 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Calkr_0835 phage SPO1 DNA polymerase-related protein
Calkr_1713 Xylose isomerase domain-containing protein TIM barrel
Calkr_1505 single-stranded-DNA-specific exonuclease RecJ
Calkr_1631 DNA ligase, NAD-dependent
Calkr_1426 DNA polymerase I
Calkr_1422 excinuclease ABC, A subunit
Calkr_1423 excinuclease ABC, B subunit
Calkr_0316 excinuclease ABC, C subunit
Calkr_1270 UvrD/REP helicase
Calkr_2500 LexA repressor
Calkr_2586 hypothetical protein
Calkr_1907 DNA-directed RNA polymerase, beta subunit
Calkr_1906 DNA-directed RNA polymerase, beta' subunit
Calkr_1732 DNA-directed RNA polymerase, alpha subunit
Calkr_1025 DNA-directed RNA polymerase, omega subunit
Calkr_0596 transcription-repair coupling factor
Calkr_1485 DNA mismatch repair protein MutS
Calkr_1654 MutS2 family protein
Calkr_1484 DNA mismatch repair protein MutL
Calkr_0988 exodeoxyribonuclease VII, large subunit
Calkr_0989 exodeoxyribonuclease VII, small subunit
Calkr_1243 DNA polymerase III, alpha subunit
Calkr_0866 DNA polymerase III, alpha subunit
Calkr_0002 DNA polymerase III, beta subunit
Calkr_0780 DNA polymerase III, delta subunit
Calkr_1806 DNA-directed DNA polymerase
Calkr_0474 DNA polymerase III, subunits gamma and tau
Calkr_0488 single-strand binding protein
Calkr_2097 single-strand binding protein
Calkr_1613 DNA adenine methylase
Calkr_2088 D12 class N6 adenine-specific DNA methyltransferase
Calkr_2565 helicase, RecD/TraA family
Calkr_0972 recA protein
Calkr_1096 Holliday junction DNA helicase RuvA
Calkr_1097 Holliday junction DNA helicase RuvB
Calkr_1095 crossover junction endodeoxyribonuclease RuvC
Calkr_2094 endodeoxyribonuclease RusA
Calkr_1027 primosomal protein N'
Calkr_1125 SMC domain protein
Calkr_1124 nuclease SbcCD, D subunit
Calkr_0499 DNA repair protein RadA
Calkr_0003 DNA replication and repair protein RecF
Calkr_0632 putative transcriptional regulator
Calkr_1205 ATP-dependent DNA helicase RecG
Calkr_1913 putative transcriptional regulator
Calkr_1396 DNA repair protein RecO
Calkr_1127 recombination protein RecR
Calkr_1322 DNA repair protein RecN
Calkr_0306 UvrD/REP helicase
Calkr_0305 hypothetical protein
Calkr_2417 CRISPR-associated protein Cas1
Calkr_2577 CRISPR-associated protein Cas1
Calkr_2531 CRISPR-associated protein Cas1
Calkr_0007 DNA gyrase, A subunit
Calkr_0005 DNA gyrase, B subunit
Calkr_0398 DNA topoisomerase I
Calkr_0606 histone family protein DNA-binding protein
Calkr_1620 DEAD/DEAH box helicase domain protein
Calkr_2337 DNA-directed DNA polymerase
Calkr_1480 transcriptional repressor, LexA family
Calkr_2090 transcriptional repressor, LexA family
Calkr_0973 hypothetical protein
Calkr_1679 DEAD/DEAH box helicase domain protein
Calkr_1042 phosphoesterase RecJ domain protein
|
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
|
03029 Mitochondrial biogenesis [BR:cki03029]
|
|
|
09183 Protein families: signaling and cellular processes
|
|
|
09185 Viral protein families
|
|
|
09184 RNA family
|
|
|
09190 Not Included in Pathway or Brite
|