KEGG Orthology (KO) - Clostridium sp. BNL1100

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:clb03030]
     03410 Base excision repair [PATH:clb03410]
     03420 Nucleotide excision repair [PATH:clb03420]
     03430 Mismatch repair [PATH:clb03430]
     03440 Homologous recombination [PATH:clb03440]
       Clo1100_2298 single-stranded-DNA-specific exonuclease RecJ
       Clo1100_3808 single stranded DNA-binding protein
       Clo1100_0067 single stranded DNA-binding protein
       Clo1100_0004 recF protein
       Clo1100_1643 DNA repair protein RecO
       Clo1100_0266 recombination protein RecR
       Clo1100_1755 protein RecA
       Clo1100_2472 DNA polymerase I
       Clo1100_1030 Holliday junction DNA helicase, RuvA subunit
       Clo1100_1031 Holliday junction DNA helicase, RuvB subunit
       Clo1100_1029 crossover junction endodeoxyribonuclease RuvC
       Clo1100_2223 ATP-dependent DNA helicase RecG
       Clo1100_0085 ATP-dependent exoDNAse (exonuclease V), alpha subunit/helicase superfamily I member
       Clo1100_1234 DNA-directed DNA polymerase III PolC
       Clo1100_1450 DNA polymerase III, alpha chain
       Clo1100_0002 DNA polymerase III, beta subunit
       Clo1100_0264 DNA polymerase III, subunit gamma/tau
       Clo1100_2299 DNA polymerase III, delta subunit
       Clo1100_0164 DNA polymerase III, delta'' subunit
       Clo1100_1868 primosomal protein N''
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
     03450 Non-homologous end-joining [PATH:clb03450]
     03460 Fanconi anemia pathway
 
   09126 Chromosome
 
   09125 Information processing in viruses
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:clb03000]
     03021 Transcription machinery [BR:clb03021]
     03019 Messenger RNA biogenesis [BR:clb03019]
     03041 Spliceosome
     03011 Ribosome [BR:clb03011]
     03009 Ribosome biogenesis [BR:clb03009]
     03016 Transfer RNA biogenesis [BR:clb03016]
     03012 Translation factors [BR:clb03012]
     03110 Chaperones and folding catalysts [BR:clb03110]
     04131 Membrane trafficking [BR:clb04131]
     04121 Ubiquitin system
     03051 Proteasome [BR:clb03051]
     03032 DNA replication proteins [BR:clb03032]
     03036 Chromosome and associated proteins [BR:clb03036]
     03400 DNA repair and recombination proteins [BR:clb03400]
       Clo1100_2936 O-6-methylguanine DNA methyltransferase
       Clo1100_3910 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
       Clo1100_2228 endonuclease III
       Clo1100_1739 DNA helicase, Rad3
       Clo1100_3339 ADP-ribose pyrophosphatase
       Clo1100_0252 ADP-ribose pyrophosphatase
       Clo1100_0182 dUTPase
       Clo1100_3616 G:T/U mismatch-specific DNA glycosylase
       Clo1100_0831 uracil-DNA glycosylase, family 4
       Clo1100_0830 uracil-DNA glycosylase, family 4
       Clo1100_3890 uracil-DNA glycosylase
       Clo1100_3001 3-methyladenine DNA glycosylase
       Clo1100_3903 exodeoxyribonuclease III
       Clo1100_2266 endonuclease IV
       Clo1100_2298 single-stranded-DNA-specific exonuclease RecJ
       Clo1100_2331 DNA ligase, NAD-dependent
       Clo1100_2472 DNA polymerase I
       Clo1100_2524 excinuclease ABC, A subunit
       Clo1100_2792 Excinuclease ATPase subunit
       Clo1100_1117 excinuclease ABC, B subunit
       Clo1100_0500 excinuclease ABC, C subunit
       Clo1100_0401 ATP-dependent DNA helicase PcrA
       Clo1100_4023 DNA/RNA helicase, superfamily I
       Clo1100_1740 DNA/RNA helicase, superfamily I
       Clo1100_0338 DNA-directed RNA polymerase, beta subunit
       Clo1100_0339 DNA-directed RNA polymerase, beta'' subunit, predominant form
       Clo1100_0464 DNA-directed RNA polymerase, alpha subunit
       Clo1100_2120 DNA-directed RNA polymerase, omega subunit
       Clo1100_3811 transcription-repair coupling factor Mfd
       Clo1100_2010 DNA mismatch repair protein MutS
       Clo1100_1245 MutS2 family protein
       Clo1100_1205 MutS domain V
       Clo1100_2009 DNA mismatch repair protein MutL
       Clo1100_0521 DNA mismatch repair enzyme MutH
       Clo1100_2245 exodeoxyribonuclease VII, large subunit
       Clo1100_2244 exodeoxyribonuclease VII, small subunit
       Clo1100_1234 DNA-directed DNA polymerase III PolC
       Clo1100_1450 DNA polymerase III, alpha chain
       Clo1100_0002 DNA polymerase III, beta subunit
       Clo1100_2299 DNA polymerase III, delta subunit
       Clo1100_0164 DNA polymerase III, delta'' subunit
       Clo1100_0264 DNA polymerase III, subunit gamma/tau
       Clo1100_3808 single stranded DNA-binding protein
       Clo1100_0067 single stranded DNA-binding protein
       Clo1100_3460 site-specific DNA methylase
       Clo1100_3546 site-specific DNA methylase
       Clo1100_3393 DNA mismatch endonuclease Vsr
       Clo1100_0085 ATP-dependent exoDNAse (exonuclease V), alpha subunit/helicase superfamily I member
       Clo1100_1755 protein RecA
       Clo1100_1030 Holliday junction DNA helicase, RuvA subunit
       Clo1100_1031 Holliday junction DNA helicase, RuvB subunit
       Clo1100_1029 crossover junction endodeoxyribonuclease RuvC
       Clo1100_1868 primosomal protein N''
       Clo1100_0060 ATPase involved in DNA repair
       Clo1100_0034 DNA repair exonuclease
       Clo1100_0059 exonuclease SbcD
       Clo1100_0365 DNA repair protein RadA
       Clo1100_0004 recF protein
       Clo1100_2223 ATP-dependent DNA helicase RecG
       Clo1100_1643 DNA repair protein RecO
       Clo1100_0266 recombination protein RecR
       Clo1100_2236 DNA repair protein RecN
       Clo1100_2098 recombination helicase AddA
       Clo1100_2099 helicase-exonuclease AddAB, AddB subunit
       Clo1100_1255 CRISPR-associated endonuclease Cas1
       Clo1100_0392 Ku protein
       Clo1100_0394 DNA polymerase LigD, polymerase domain protein
       Clo1100_0393 ATP dependent DNA ligase-like protein,ATP dependent DNA ligase family protein
       Clo1100_1104 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
       Clo1100_4109 DNA gyrase, A subunit
       Clo1100_1103 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
       Clo1100_0006 DNA gyrase, B subunit
       Clo1100_2416 DNA topoisomerase I, bacterial
       Clo1100_3806 bacterial nucleoid DNA-binding protein
       Clo1100_0815 bacterial nucleoid DNA-binding protein
       Clo1100_0605 ATP-dependent DNA helicase, RecQ family
       Clo1100_2367 nucleotidyltransferase/DNA polymerase involved in DNA repair
       Clo1100_0995 nucleotidyltransferase/DNA polymerase involved in DNA repair
       Clo1100_2006 SOS regulatory protein LexA
       Clo1100_1756 hypothetical protein
       Clo1100_0849 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
       Clo1100_1457 exopolyphosphatase-like enzyme
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K15342 cas1; CRISP-associated protein Cas1
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
     03029 Mitochondrial biogenesis [BR:clb03029]
 
   09183 Protein families: signaling and cellular processes
 
   09185 Viral protein families
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: March 25, 2024