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KO |
09100 Metabolism
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09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:eae03030]
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03410 Base excision repair [PATH:eae03410]
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03420 Nucleotide excision repair [PATH:eae03420]
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03430 Mismatch repair [PATH:eae03430]
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03440 Homologous recombination [PATH:eae03440]
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EAE_02805 ssDNA exonuclease RecJ
EAE_08515 single-stranded DNA-binding protein
EAE_07025 recF; recombination protein F
EAE_00920 recO; DNA repair protein RecO
EAE_13000 recR; recombination protein RecR
EAE_01520 recA; recombinase A
EAE_07315 DNA polymerase I
EAE_22855 ruvA; Holliday junction DNA helicase RuvA
EAE_22850 ruvB; Holliday junction DNA helicase RuvB
EAE_22860 ruvC; Holliday junction resolvase
EAE_06455 ATP-dependent DNA helicase RecG
EAE_02100 recB; exonuclease V subunit beta
EAE_02110 recC; exonuclease V subunit gamma
EAE_02095 recD; exonuclease V subunit alpha
EAE_11715 dnaE; DNA polymerase III subunit alpha
EAE_07030 DNA polymerase III subunit beta
EAE_12990 DNA polymerase III subunits gamma and tau
EAE_13885 holA; DNA polymerase III subunit delta
EAE_16405 DNA polymerase III subunit delta'
EAE_11850 DNA polymerase III subunit epsilon
EAE_22770 DNA polymerase III subunit theta
EAE_09760 DNA polymerase III subunit chi
EAE_10540 DNA polymerase III subunit psi
EAE_07580 primosome assembly protein PriA
EAE_09445 primosomal replication protein N
EAE_12975 primosomal replication protein N''
EAE_10475 primosomal protein DnaI
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:eae03000]
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03021 Transcription machinery [BR:eae03021]
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03019 Messenger RNA biogenesis [BR:eae03019]
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03041 Spliceosome
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03011 Ribosome [BR:eae03011]
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03009 Ribosome biogenesis [BR:eae03009]
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03016 Transfer RNA biogenesis [BR:eae03016]
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03012 Translation factors [BR:eae03012]
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03110 Chaperones and folding catalysts [BR:eae03110]
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04131 Membrane trafficking [BR:eae04131]
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04121 Ubiquitin system [BR:eae04121]
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03051 Proteasome [BR:eae03051]
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03032 DNA replication proteins [BR:eae03032]
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03036 Chromosome and associated proteins [BR:eae03036]
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03400 DNA repair and recombination proteins [BR:eae03400]
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EAE_18130 O-6-alkylguanine-DNA:cysteine-protein methyltransferase
EAE_14095 deoxyribodipyrimidine photolyase
EAE_00985 uracil-DNA glycosylase
EAE_03195 adenine DNA glycosylase
EAE_17920 endonuclease III
EAE_11305 nucleoside triphosphate pyrophosphohydrolase
EAE_06400 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
EAE_24195 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase
EAE_24190 alpha-ketoglutarate-dependent dioxygenase AlkB
EAE_03695 G/U mismatch-specific DNA glycosylase
EAE_06020 3-methyl-adenine DNA glycosylase I
EAE_06375 formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
EAE_14140 endonuclease VIII
EAE_21605 exonuclease III
EAE_24010 endonuclease IV
EAE_08200 endonuclease V
EAE_02805 ssDNA exonuclease RecJ
EAE_00345 ligA; NAD-dependent DNA ligase LigA
EAE_06430 ligB; NAD-dependent DNA ligase LigB
EAE_07315 DNA polymerase I
EAE_08510 uvrA; excinuclease ABC subunit A
EAE_14465 excinuclease ABC subunit B
EAE_23020 uvrC; excinuclease ABC subunit C
EAE_21570 nucleotide excision repair endonuclease
EAE_07910 uvrD; DNA-dependent helicase II
EAE_08125 rpoB; DNA-directed RNA polymerase subunit beta
EAE_08130 DNA-directed RNA polymerase subunit beta'
EAE_04830 DNA-directed RNA polymerase subunit alpha
EAE_06440 rpoZ; DNA-directed RNA polymerase subunit omega
EAE_16485 transcription-repair coupling factor
EAE_01780 DNA mismatch repair protein MutS
EAE_09305 mutL; DNA mismatch repair protein
EAE_02155 DNA mismatch repair protein
EAE_23340 sbcB; exonuclease I
EAE_00670 xseA; exodeoxyribonuclease VII large subunit
EAE_12580 exodeoxyribonuclease VII small subunit
EAE_22775 exodeoxyribonuclease X
EAE_11715 dnaE; DNA polymerase III subunit alpha
EAE_07030 DNA polymerase III subunit beta
EAE_09760 DNA polymerase III subunit chi
EAE_13885 holA; DNA polymerase III subunit delta
EAE_16405 DNA polymerase III subunit delta'
EAE_11850 DNA polymerase III subunit epsilon
EAE_12990 DNA polymerase III subunits gamma and tau
EAE_10540 DNA polymerase III subunit psi
EAE_22770 DNA polymerase III subunit theta
EAE_08515 single-stranded DNA-binding protein
EAE_05150 DNA adenine methylase
EAE_23105 very short patch repair protein
EAE_02100 recB; exonuclease V subunit beta
EAE_02110 recC; exonuclease V subunit gamma
EAE_02095 recD; exonuclease V subunit alpha
EAE_01520 recA; recombinase A
EAE_22855 ruvA; Holliday junction DNA helicase RuvA
EAE_22850 ruvB; Holliday junction DNA helicase RuvB
EAE_22860 ruvC; Holliday junction resolvase
EAE_22385 endodeoxyribonuclease RUS
EAE_21155 endodeoxyribonuclease RUS
EAE_07580 primosome assembly protein PriA
EAE_09445 primosomal replication protein N
EAE_12975 primosomal replication protein N''
EAE_10475 primosomal protein DnaI
EAE_12425 exonuclease subunit SbcC
EAE_12430 exonuclease subunit SbcD
EAE_10615 DNA repair protein RadA
EAE_07025 recF; recombination protein F
EAE_06455 ATP-dependent DNA helicase RecG
EAE_00920 recO; DNA repair protein RecO
EAE_13000 recR; recombination protein RecR
EAE_01140 recombination and repair protein
EAE_12415 rdgC; recombination associated protein
EAE_24115 type III restriction protein res subunit
EAE_09785 hypothetical protein
EAE_24230 DNA gyrase subunit A
EAE_07020 gyrB; DNA gyrase subunit B
EAE_21345 DNA topoisomerase I subunit omega
EAE_08210 transcriptional regulator HU subunit alpha
EAE_12780 transcriptional regulator HU subunit beta
EAE_21230 putative entero exodeoxyribonuclease VIII
EAE_04725 fis; global DNA-binding transcriptional dual regulator Fis
EAE_17005 ihfA; integration host factor subunit alpha
EAE_15160 ihfB; integration host factor subunit beta
EAE_07935 ATP-dependent DNA helicase RecQ
EAE_16885 global DNA-binding transcriptional dual regulator H-NS
EAE_11930 DNA polymerase IV
EAE_22145 umuC; DNA polymerase V subunit UmuC
EAE_20980 umuC; DNA polymerase V subunit UmuC
EAE_21900 umuC; DNA polymerase V subunit UmuC
EAE_21895 DNA polymerase V subunit UmuD
EAE_08430 LexA repressor
EAE_11080 DNA polymerase II
EAE_16285 DNA-damage-inducible protein I
EAE_01515 recX; recombination regulator RecX
EAE_07755 ATP-dependent DNA helicase Rep
EAE_15375 helD; DNA helicase IV
EAE_14575 dinG; ATP-dependent DNA helicase DinG
EAE_22565 putative ATP-dependent helicase
EAE_01425 ribonucleotide-diphosphate reductase subunit alpha
EAE_24240 ribonucleotide-diphosphate reductase subunit alpha
EAE_24245 nrdB; ribonucleotide-diphosphate reductase subunit beta
EAE_01430 nrdF; ribonucleotide-diphosphate reductase subunit beta
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K19789 radD; DNA repair protein RadD
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-]
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:eae03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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