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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:ebr03030]
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03410 Base excision repair [PATH:ebr03410]
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03420 Nucleotide excision repair [PATH:ebr03420]
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03430 Mismatch repair [PATH:ebr03430]
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03440 Homologous recombination [PATH:ebr03440]
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 ECB_02724 recJ; ssDNA exonuclease, 5' -> 3'-specific
ECB_03931 ssb; single-strand DNA-binding protein
ECB_03522 Single-strand binding protein (SSB) (Helix-destabilizing protein)
ECB_03583 recF; recombination protein F
ECB_02459 recO; DNA repair protein RecO
ECB_00423 recR; recombination protein RecR
ECB_02549 recA; recombinase A
ECB_03749 polA; DNA polymerase I
ECB_01832 ruvA; Holliday junction DNA helicase motor protein
ECB_01831 ruvB; Holliday junction DNA helicase B
ECB_01834 ruvC; Holliday junction resolvase
ECB_03509 recG; ATP-dependent DNA helicase
ECB_02668 recB; exonuclease V (RecBCD complex), beta subunit
ECB_02670 recC; exonuclease V (RecBCD complex), gamma chain
ECB_02667 recD; exonuclease V (RecBCD complex), alpha chain
ECB_00182 dnaE; DNA polymerase III subunit alpha
ECB_03584 dnaN; DNA polymerase III subunit beta
ECB_00421 dnaX; DNA polymerase III subunits gamma and tau
ECB_00609 holA; DNA polymerase III subunit delta
ECB_01095 holB; DNA polymerase III subunit delta'
ECB_00208 dnaQ; DNA polymerase III subunit epsilon
ECB_01813 holE; DNA polymerase III, theta subunit
ECB_04125 holC; DNA polymerase III subunit chi
ECB_04247 holD; DNA polymerase III subunit psi
ECB_03820 priA; primosome assembly protein PriA
ECB_04068 priB; primosomal replication protein N
ECB_00418 priC; primosomal replication protein N''
ECB_04239 dnaT; primosomal protein I
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:ebr03000]
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03021 Transcription machinery [BR:ebr03021]
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03019 Messenger RNA biogenesis [BR:ebr03019]
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03041 Spliceosome
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03011 Ribosome [BR:ebr03011]
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03009 Ribosome biogenesis [BR:ebr03009]
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03016 Transfer RNA biogenesis [BR:ebr03016]
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03012 Translation factors [BR:ebr03012]
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03110 Chaperones and folding catalysts [BR:ebr03110]
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04131 Membrane trafficking [BR:ebr04131]
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04121 Ubiquitin system [BR:ebr04121]
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03051 Proteasome [BR:ebr03051]
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03032 DNA replication proteins [BR:ebr03032]
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03036 Chromosome and associated proteins [BR:ebr03036]
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03400 DNA repair and recombination proteins [BR:ebr03400]
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ECB_01312 ogt; O-6-alkylguanine-DNA:cysteine-protein methyltransferase
ECB_00668 phrB; deoxyribodipyrimidine photolyase, FAD-binding
ECB_02474 ung; uracil-DNA glycosylase
ECB_02791 mutY; adenine DNA glycosylase
ECB_01603 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
ECB_00100 mutT; nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP
ECB_03497 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
ECB_02140 ada; fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase
ECB_02139 alkB; oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions
ECB_02938 ygjF; G/U mismatch-specific DNA glycosylase
ECB_01974 alkA; 3-methyl-adenine DNA glycosylase II
ECB_03399 tag; 3-methyl-adenine DNA glycosylase I, constitutive
ECB_03492 mutM; formamidopyrimidine-DNA glycosylase
ECB_00674 nei; endonuclease VIII/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
ECB_01718 xthA; exonuclease III
ECB_02088 nfo; endonuclease IV
ECB_03875 nfi; endonuclease V
ECB_02724 recJ; ssDNA exonuclease, 5' -> 3'-specific
ECB_02311 ligA; NAD-dependent DNA ligase LigA
ECB_03504 yicF; NAD-dependent DNA ligase LigB
ECB_03749 polA; DNA polymerase I
ECB_03930 uvrA; excinuclease ABC subunit A
ECB_00746 uvrB; excinuclease ABC subunit B
ECB_01878 uvrC; excinuclease ABC subunit C
ECB_01710 ydjQ; endonuclease of nucleotide excision repair
ECB_03689 uvrD; DNA-dependent ATPase I and helicase II
ECB_03863 rpoB; DNA-directed RNA polymerase subunit beta
ECB_03864 rpoC; DNA-directed RNA polymerase subunit beta'
ECB_03146 rpoA; DNA-directed RNA polymerase subunit alpha
ECB_03506 rpoZ; DNA-directed RNA polymerase subunit omega
ECB_01110 mfd; transcription-repair coupling factor
ECB_02583 mutS; DNA mismatch repair protein
ECB_04037 mutL; DNA mismatch repair protein
ECB_02679 mutH; DNA mismatch repair protein
ECB_01914 sbcB; exonuclease I
ECB_02401 xseA; exodeoxyribonuclease VII large subunit
ECB_00370 xseB; exodeoxyribonuclease VII small subunit
ECB_01815 exoX; exodeoxyribonuclease X
ECB_00182 dnaE; DNA polymerase III subunit alpha
ECB_03584 dnaN; DNA polymerase III subunit beta
ECB_04125 holC; DNA polymerase III subunit chi
ECB_00609 holA; DNA polymerase III subunit delta
ECB_01095 holB; DNA polymerase III subunit delta'
ECB_00208 dnaQ; DNA polymerase III subunit epsilon
ECB_00421 dnaX; DNA polymerase III subunits gamma and tau
ECB_04247 holD; DNA polymerase III subunit psi
ECB_01813 holE; DNA polymerase III, theta subunit
ECB_03931 ssb; single-strand DNA-binding protein
ECB_03522 Single-strand binding protein (SSB) (Helix-destabilizing protein)
ECB_00824 retron EC67 DNA adenine methylase-like protein
ECB_03239 dam; DNA adenine methylase
ECB_02668 recB; exonuclease V (RecBCD complex), beta subunit
ECB_02670 recC; exonuclease V (RecBCD complex), gamma chain
ECB_02667 recD; exonuclease V (RecBCD complex), alpha chain
ECB_02549 recA; recombinase A
ECB_01832 ruvA; Holliday junction DNA helicase motor protein
ECB_01831 ruvB; Holliday junction DNA helicase B
ECB_01834 ruvC; Holliday junction resolvase
ECB_00500 rus; endonuclease RUS
ECB_03820 priA; primosome assembly protein PriA
ECB_04068 priB; primosomal replication protein N
ECB_00418 priC; primosomal replication protein N''
ECB_04239 dnaT; primosomal protein I
ECB_00345 sbcC; exonuclease, dsDNA, ATP-dependent
ECB_00346 sbcD; exonuclease, dsDNA, ATP-dependent
ECB_04265 sms; predicted repair protein
ECB_03583 recF; recombination protein F
ECB_03509 recG; ATP-dependent DNA helicase
ECB_02459 recO; DNA repair protein RecO
ECB_00423 recR; recombination protein RecR
ECB_02504 recN; recombination and repair protein
ECB_00342 rdgC; recombination associated protein
ECB_02114 yejH; predicted ATP-dependet helicase
ECB_04129 yjgR; predicted ATPase
ECB_02157 gyrA; DNA gyrase subunit A
ECB_03582 gyrB; DNA gyrase subunit B
ECB_01250 topA; DNA topoisomerase I
ECB_03877 hupA; HU, DNA-binding transcriptional regulator, alpha subunit
ECB_00392 hupB; HU, DNA-binding transcriptional regulator, beta subunit
ECB_01327 recE; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease
ECB_01326 recT; recombination and repair protein
ECB_03119 fis; DNA-binding protein Fis
ECB_01681 himA; integration host factor subunit alpha
ECB_00916 himD; integration host factor subunit beta
ECB_03701 recQ; ATP-dependent DNA helicase
ECB_01213 hns; global DNA-binding transcriptional dual regulator H-NS
ECB_00226 dinB; DNA polymerase IV
ECB_01159 umuC; DNA polymerase V subunit UmuC
ECB_01158 umuD; DNA polymerase V, subunit D
ECB_03915 lexA; LexA repressor
ECB_00062 polB; DNA polymerase II
ECB_03502 dinD; DNA-damage-inducible protein
ECB_01057 dinI; DNA damage-inducible protein I
ECB_02548 recX; RecA regulator RecX
ECB_03263 yhgA; predicted transposase
ECB_02230 yfcI; hypothetical protein
ECB_00131 yadD; predicted transposase
ECB_04207 yjiPQ; predicted transposase
ECB_02170 yfaD; hypothetical protein
ECB_03656 rep; DNA helicase and single-stranded DNA-dependent ATPase
ECB_00966 helD; DNA helicase IV
ECB_00766 dinG; ATP-dependent DNA helicase
ECB_01778 yoaA; conserved hypothetical protein with nucleoside triphosphate hydrolase domain
ECB_01623 lhr; predicted ATP-dependent helicase
ECB_02160 nrdA; ribonucleotide-diphosphate reductase alpha subunit
ECB_02531 nrdE; ribonucleotide-diphosphate reductase alpha subunit
ECB_02161 nrdB; ribonucleotide-diphosphate reductase beta subunit
ECB_02532 nrdF; ribonucleotide-diphosphate reductase beta subunit
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K19789 radD; DNA repair protein RadD
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-]
K07455 recT; recombination protein RecT
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14623 dinD; DNA-damage-inducible protein D
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K01157 rpnA; recombination-promoting nuclease RpnA [EC:3.1.21.-]
K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]
K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-]
K24089 rpnD; recombination-promoting nuclease RpnD [EC:3.1.21.-]
K24090 rpnE; recombination-promoting nuclease RpnE
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:ebr03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Escherichia coli B REL606