KEGG Orthology (KO) - Escherichia coli K-12 DH10B

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     KO 
 09100 Metabolism

 





 09120 Genetic Information Processing





 







   09121 Transcription





 







   09122 Translation





 







   09123 Folding, sorting and degradation





 







   09124 Replication and repair





     03030 DNA replication [PATH:ecd03030]





     03410 Base excision repair [PATH:ecd03410]





     03420 Nucleotide excision repair [PATH:ecd03420]





     03430 Mismatch repair [PATH:ecd03430]





     03440 Homologous recombination [PATH:ecd03440]





       ECDH10B_3066 recJ; ssDNA exonuclease, 5' --> 3'-specific
       ECDH10B_4248 ssb; Single-stranded DNA-binding protein
       ECDH10B_3886 recF; gap repair protein
       ECDH10B_2733 recO; gap repair protein
       ECDH10B_0428 recR; gap repair protein
       ECDH10B_4052 polA; DNA polymerase I
       ECDH10B_2002 ruvA; component of RuvABC resolvasome, regulatory subunit
       ECDH10B_2001 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome
       ECDH10B_2004 ruvC; component of RuvABC resolvasome, endonuclease
       ECDH10B_3834 recG; ATP-dependent DNA helicase
       ECDH10B_2990 recB; exonuclease V (RecBCD complex), beta subunit
       ECDH10B_2992 recC; exonuclease V (RecBCD complex), gamma chain
       ECDH10B_2989 recD; exonuclease V (RecBCD complex), alpha chain
       ECDH10B_0164 dnaE; DNA polymerase III alpha subunit
       ECDH10B_3887 dnaN; DNA polymerase III, beta subunit
       ECDH10B_0426 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits
       ECDH10B_0601 holA; DNA polymerase III, delta subunit
       ECDH10B_0709 holA; DNA polymerase III, delta subunit
       ECDH10B_1171 holB; DNA polymerase III, delta prime subunit
       ECDH10B_0196 dnaQ; DNA polymerase III epsilon subunit
       ECDH10B_1983 holE; DNA polymerase III, theta subunit
       ECDH10B_4452 holC; DNA polymerase III, chi subunit
       ECDH10B_4529 holD; DNA polymerase III, psi subunit
       ECDH10B_4124 priA; Primosome factor n' (replication factor Y)
       ECDH10B_0423 priC; primosomal replication protein N''
       ECDH10B_4518 dnaT; DNA biosynthesis protein (primosomal protein I)



K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT





     03450 Non-homologous end-joining





     03460 Fanconi anemia pathway





 







   09126 Chromosome





 







   09125 Information processing in viruses





 







 09130 Environmental Information Processing





 







 09140 Cellular Processes





 







 09150 Organismal Systems





 







 09160 Human Diseases





 







 09180 Brite Hierarchies





 







   09181 Protein families: metabolism





 







   09182 Protein families: genetic information processing





     03000 Transcription factors [BR:ecd03000]





     03021 Transcription machinery [BR:ecd03021]





     03019 Messenger RNA biogenesis [BR:ecd03019]





     03041 Spliceosome





     03011 Ribosome [BR:ecd03011]





     03009 Ribosome biogenesis [BR:ecd03009]





     03016 Transfer RNA biogenesis [BR:ecd03016]





     03012 Translation factors [BR:ecd03012]





     03110 Chaperones and folding catalysts [BR:ecd03110]





     04131 Membrane trafficking [BR:ecd04131]





     04121 Ubiquitin system [BR:ecd04121]





     03051 Proteasome [BR:ecd03051]





     03032 DNA replication proteins [BR:ecd03032]





     03036 Chromosome and associated proteins [BR:ecd03036]





     03400 DNA repair and recombination proteins [BR:ecd03400]





       ECDH10B_1455 ogt; O-6-alkylguanine-DNA:cysteine-protein methyltransferase
       ECDH10B_0775 phr; deoxyribodipyrimidine photolyase, FAD-binding
       ECDH10B_2748 ung; uracil-DNA-glycosylase
       ECDH10B_3136 mutY; adenine DNA glycosylase
       ECDH10B_1767 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
       ECDH10B_0081 mutT; nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP
       ECDH10B_3822 dut; deoxyuridinetriphosphatase
       ECDH10B_2370 ada; fused DNA-binding transcriptional dual regulator; O6-methylguanine-DNA methyltransferase
       ECDH10B_2369 alkB; oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions
       ECDH10B_3243 mug; G/U mismatch-specific DNA glycosylase
       ECDH10B_2218 alkA; 3-methyl-adenine DNA glycosylase II
       ECDH10B_3728 tag; 3-methyl-adenine DNA glycosylase I, constitutive
       ECDH10B_3817 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
       ECDH10B_0781 nei; endonuclease VIII; 5-formyluracil/5-hydroxymethyluracil DNA glycosylase
       ECDH10B_1887 xthA; exonuclease III
       ECDH10B_2316 nfo; endonuclease IV with intrinsic 3'-5' exonuclease activity
       ECDH10B_4187 nfi; endonuclease V
       ECDH10B_3066 recJ; ssDNA exonuclease, 5' --> 3'-specific
       ECDH10B_2576 ligA; DNA ligase, NAD(+)-dependent
       ECDH10B_3829 ligB; DNA ligase, NAD(+)-dependent
       ECDH10B_4052 polA; DNA polymerase I
       ECDH10B_0847 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component
       ECDH10B_2054 uvrC; excinuclease UvrABC, endonuclease subunit
       ECDH10B_1879 cho; endonuclease of nucleotide excision repair
       ECDH10B_4005 uvrD; DNA-dependent ATPase I and helicase II
       ECDH10B_4175 rpoB; RNA polymerase, beta subunit
       ECDH10B_4176 rpoC; RNA polymerase, beta prime subunit
       ECDH10B_3470 rpoA; RNA polymerase, alpha subunit
       ECDH10B_3831 rpoZ; RNA polymerase, omega subunit
       ECDH10B_1186 mfd; transcription-repair coupling factor
       ECDH10B_2901 mutS; methyl-directed mismatch repair protein
       ECDH10B_4365 mutL; methyl-directed mismatch repair protein
       ECDH10B_3001 mutH; methyl-directed mismatch repair protein
       ECDH10B_2158 sbcB; exonuclease I
       ECDH10B_2675 xseA; exonuclease VII, large subunit
       ECDH10B_0378 xseB; exonuclease VII small subunit
       ECDH10B_1985 exoX; DNA exonuclease X
       ECDH10B_0164 dnaE; DNA polymerase III alpha subunit
       ECDH10B_3887 dnaN; DNA polymerase III, beta subunit
       ECDH10B_4452 holC; DNA polymerase III, chi subunit
       ECDH10B_0601 holA; DNA polymerase III, delta subunit
       ECDH10B_0709 holA; DNA polymerase III, delta subunit
       ECDH10B_1171 holB; DNA polymerase III, delta prime subunit
       ECDH10B_0196 dnaQ; DNA polymerase III epsilon subunit
       ECDH10B_0426 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits
       ECDH10B_4529 holD; DNA polymerase III, psi subunit
       ECDH10B_1983 holE; DNA polymerase III, theta subunit
       ECDH10B_4248 ssb; Single-stranded DNA-binding protein
       ECDH10B_3562 dam; DNA adenine methylase
       ECDH10B_2102 vsr; DNA mismatch endonuclease of very short patch repair
       ECDH10B_2990 recB; exonuclease V (RecBCD complex), beta subunit
       ECDH10B_2992 recC; exonuclease V (RecBCD complex), gamma chain
       ECDH10B_2989 recD; exonuclease V (RecBCD complex), alpha chain
       ECDH10B_2002 ruvA; component of RuvABC resolvasome, regulatory subunit
       ECDH10B_2001 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome
       ECDH10B_2004 ruvC; component of RuvABC resolvasome, endonuclease
       ECDH10B_0506 rusA; DLP12 prophage; endonuclease RUS
       ECDH10B_4124 priA; Primosome factor n' (replication factor Y)
       ECDH10B_0423 priC; primosomal replication protein N''
       ECDH10B_4518 dnaT; DNA biosynthesis protein (primosomal protein I)
       ECDH10B_0353 sbcC; exonuclease, dsDNA, ATP-dependent
       ECDH10B_0354 sbcD; exonuclease, dsDNA, ATP-dependent
       ECDH10B_4547 radA; predicted repair protein
       ECDH10B_3886 recF; gap repair protein
       ECDH10B_3834 recG; ATP-dependent DNA helicase
       ECDH10B_2733 recO; gap repair protein
       ECDH10B_0428 recR; gap repair protein
       ECDH10B_2782 recN; recombination and repair protein
       ECDH10B_0350 rdgC; DNA-binding protein, non-specific
       ECDH10B_2923 ygbT; conserved protein
       ECDH10B_2342 yejH; predicted ATP-dependet helicase
       ECDH10B_4456 yjgR; predicted ATPase
       ECDH10B_2390 gyrA; DNA gyrase (type II topoisomerase), subunit A
       ECDH10B_1389 topA; DNA topoisomerase I, omega subunit
       ECDH10B_4189 hupA; HU, DNA-binding transcriptional regulator, alpha subunit
       ECDH10B_0396 hupB; HU, DNA-binding transcriptional regulator, beta subunit
       ECDH10B_1471 recE; Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease
       ECDH10B_1470 recT; Rac prophage; recombination and repair protein
       ECDH10B_1319 bet; RecT protein
       ECDH10B_3436 fis; global DNA-binding transcriptional dual regulator
       ECDH10B_1848 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit
       ECDH10B_0982 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit
       ECDH10B_4013 recQ; ATP-dependent DNA helicase
       ECDH10B_1297 hns; global DNA-binding transcriptional dual regulator H-NS
       ECDH10B_0213 dinB; DNA polymerase IV
       ECDH10B_1237 umuC; DNA polymerase V, subunit C
       ECDH10B_1236 umuD; DNA polymerase V, subunit D
       ECDH10B_4232 lexA; DNA-binding transcriptional repressor of SOS regulon
       ECDH10B_3827 dinD; DNA-damage-inducible protein
       ECDH10B_1132 dinI; DNA damage-inducible protein I
       ECDH10B_2866 recX; inhibitor of RecA
       ECDH10B_2467 yfcI; putative transposase
       ECDH10B_0112 yadD; predicted transposase
       ECDH10B_2403 yfaD; conserved protein
       ECDH10B_3967 rep; DNA helicase and single-stranded DNA-dependent ATPase
       ECDH10B_1032 helD; DNA helicase IV
       ECDH10B_1946 yoaA; conserved protein with nucleoside triphosphate hydrolase domain
       ECDH10B_0867 dinG; ATP-dependent DNA helicase
       ECDH10B_1787 lhr; predicted ATP-dependent helicase
       ECDH10B_2842 nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit
       ECDH10B_2393 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit
       ECDH10B_2394 nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein
       ECDH10B_2843 nrdF; ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein



K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-]
K07455 recT; recombination protein RecT
K07455 recT; recombination protein RecT
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14623 dinD; DNA-damage-inducible protein D
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]
K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-]
K24090 rpnE; recombination-promoting nuclease RpnE
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]





     03029 Mitochondrial biogenesis [BR:ecd03029]





 







   09183 Protein families: signaling and cellular processes





 







   09185 Viral protein families





 







   09184 RNA family





 







 09190 Not Included in Pathway or Brite













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Last updated: April 23, 2024