| |
KO |
 09100 Metabolism
|
|
|
 09120 Genetic Information Processing
|
|
|
09121 Transcription
|
|
|
09122 Translation
|
|
|
09123 Folding, sorting and degradation
|
|
|
09124 Replication and repair
|
03030 DNA replication [PATH:ftw03030]
|
 FTW_0993 dnaQ; DNA polymerase III, epsilon subunit
FTW_1672 dnaE; DNA polymerase III alpha subunit
FTW_1901 dnaX; DNA polymerase III subunit gamma/tau
FTW_1610 putative DNA polymerase III, delta prime subunit
FTW_1894 holA; DNA polymerase III, delta subunit
FTW_1787 holC; DNA polymerase III (CHI subunit) protein
FTW_0002 dnaN; DNA polymerase III, beta subunit
FTW_0969 dnaB; replicative DNA helicase
FTW_0945 dnaG; DNA primase
FTW_1990 ssb; single-strand binding protein
FTW_1139 rnhA; RNase H
FTW_0562 rnhB; ribonuclease HII
FTW_0196 polA; multifunctional DNA polymerase I
FTW_0501 ligA; DNA ligase, NAD-dependent
|
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
|
03410 Base excision repair [PATH:ftw03410]
|
03420 Nucleotide excision repair [PATH:ftw03420]
|
03430 Mismatch repair [PATH:ftw03430]
|
FTW_0792 mutS; DNA mismatch repair protein MutS
FTW_1584 mutL; DNA mismatch repair protein
FTW_0206 uvrD; DNA helicase II
FTW_1404 UvrD/REP helicase
FTW_1247 exonuclease
FTW_1239 xseA; exodeoxyribonuclease VII large subunit
FTW_1238 hypothetical protein
FTW_1592 recJ; single-stranded-DNA-specific exonuclease RecJ
FTW_1990 ssb; single-strand binding protein
FTW_1672 dnaE; DNA polymerase III alpha subunit
FTW_0002 dnaN; DNA polymerase III, beta subunit
FTW_1901 dnaX; DNA polymerase III subunit gamma/tau
FTW_1894 holA; DNA polymerase III, delta subunit
FTW_1610 putative DNA polymerase III, delta prime subunit
FTW_0993 dnaQ; DNA polymerase III, epsilon subunit
FTW_1787 holC; DNA polymerase III (CHI subunit) protein
FTW_0501 ligA; DNA ligase, NAD-dependent
|
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
|
03440 Homologous recombination [PATH:ftw03440]
|
FTW_1592 recJ; single-stranded-DNA-specific exonuclease RecJ
FTW_1990 ssb; single-strand binding protein
FTW_0673 DNA replication and repair protein RecF
FTW_0722 recO; DNA repair protein RecO
FTW_0606 recR; recombination protein RecR
FTW_1988 recA; Recombinase A
FTW_0196 polA; multifunctional DNA polymerase I
FTW_1070 ruvA; holliday junction DNA helicase RuvA
FTW_0920 ruvB; holliday junction DNA helicase RuvB
FTW_1072 ruvC; crossover junction endodeoxyribonuclease RuvC
FTW_0333 recG; ATP-dependent DNA helicase RecG
FTW_0494 recB; exodeoxyribonuclease V, beta subunit
FTW_0491 recC; exodeoxyribonuclease V, gamma subunit
FTW_0495 recD; exodeoxyribonuclease V, alpha subunit
FTW_1672 dnaE; DNA polymerase III alpha subunit
FTW_0002 dnaN; DNA polymerase III, beta subunit
FTW_1901 dnaX; DNA polymerase III subunit gamma/tau
FTW_1894 holA; DNA polymerase III, delta subunit
FTW_1610 putative DNA polymerase III, delta prime subunit
FTW_0993 dnaQ; DNA polymerase III, epsilon subunit
FTW_1787 holC; DNA polymerase III (CHI subunit) protein
FTW_1872 priA; primosomal protein N'
|
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
|
03450 Non-homologous end-joining
|
03460 Fanconi anemia pathway
|
|
|
09126 Chromosome
|
|
|
09125 Information processing in viruses
|
|
|
09130 Environmental Information Processing
|
|
|
09140 Cellular Processes
|
|
|
09150 Organismal Systems
|
|
|
09160 Human Diseases
|
|
|
09180 Brite Hierarchies
|
|
|
09181 Protein families: metabolism
|
|
|
09182 Protein families: genetic information processing
|
03000 Transcription factors [BR:ftw03000]
|
03021 Transcription machinery [BR:ftw03021]
|
03019 Messenger RNA biogenesis [BR:ftw03019]
|
03041 Spliceosome
|
03011 Ribosome [BR:ftw03011]
|
03009 Ribosome biogenesis [BR:ftw03009]
|
03016 Transfer RNA biogenesis [BR:ftw03016]
|
03012 Translation factors [BR:ftw03012]
|
03110 Chaperones and folding catalysts [BR:ftw03110]
|
04131 Membrane trafficking [BR:ftw04131]
|
04121 Ubiquitin system [BR:ftw04121]
|
03051 Proteasome [BR:ftw03051]
|
03032 DNA replication proteins [BR:ftw03032]
|
FTW_1139 rnhA; RNase H
FTW_1102 hup; DNA-binding protein HU-beta
FTW_0001 dnaA; chromosomal replication initiator protein DnaA
FTW_0969 dnaB; replicative DNA helicase
FTW_0945 dnaG; DNA primase
FTW_1990 ssb; single-strand binding protein
FTW_1672 dnaE; DNA polymerase III alpha subunit
FTW_0002 dnaN; DNA polymerase III, beta subunit
FTW_1787 holC; DNA polymerase III (CHI subunit) protein
FTW_1894 holA; DNA polymerase III, delta subunit
FTW_1610 putative DNA polymerase III, delta prime subunit
FTW_0993 dnaQ; DNA polymerase III, epsilon subunit
FTW_1901 dnaX; DNA polymerase III subunit gamma/tau
FTW_0562 rnhB; ribonuclease HII
FTW_0196 polA; multifunctional DNA polymerase I
FTW_0501 ligA; DNA ligase, NAD-dependent
FTW_0351 gyrA; DNA gyrase, A subunit
FTW_1555 gyrB; DNA gyrase, B subunit
FTW_1678 parC; DNA topoisomerase IV, A subunit
FTW_0254 parE; DNA topoisomerase IV, B subunit
FTW_1273 topA; DNA topoisomerase I
|
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03530 hupB; DNA-binding protein HU-beta
K02313 dnaA; chromosomal replication initiator protein
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
|
03036 Chromosome and associated proteins [BR:ftw03036]
|
03400 DNA repair and recombination proteins [BR:ftw03400]
|
FTW_0773 methylated-DNA--protein-cysteine methyltransferase family protein
FTW_1173 phrB1; deoxyribodipyrimidine photolyase
FTW_1339 phrB2; deoxyribodipyrimidine photolyase
FTW_0348 ung; uracil-DNA glycosylase
FTW_1062 3-methyladenine DNA glycosylase
FTW_1081 nth; endonuclease III
FTW_1363 hydrolase, NUDIX family
FTW_1763 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
FTW_1550 mutM; formamidopyrimidine-DNA glycosylase
FTW_0858 xthA; exodeoxyribonuclease III
FTW_1592 recJ; single-stranded-DNA-specific exonuclease RecJ
FTW_0501 ligA; DNA ligase, NAD-dependent
FTW_0196 polA; multifunctional DNA polymerase I
FTW_1478 uvrA; excinuclease ABC, A subunit
FTW_1246 uvrB; excinuclease ABC, B subunit
FTW_1461 uvrC; excinuclease ABC, C subunit
FTW_0206 uvrD; DNA helicase II
FTW_1404 UvrD/REP helicase
FTW_0234 rpoB; DNA-directed RNA polymerase, beta subunit
FTW_0235 rpoC; DNA-directed RNA polymerase, beta prime subunit
FTW_1733 rpoA2; DNA-directed RNA polymerase, alpha subunit
FTW_0446 rpoA1; DNA-directed RNA polymerase, alpha subunit
FTW_1540 rpoZ; DNA-directed RNA polymerase, omega subunit
FTW_1085 mfd; transcription-repair coupling factor
FTW_0792 mutS; DNA mismatch repair protein MutS
FTW_1584 mutL; DNA mismatch repair protein
FTW_1247 exonuclease
FTW_1239 xseA; exodeoxyribonuclease VII large subunit
FTW_1238 hypothetical protein
FTW_1672 dnaE; DNA polymerase III alpha subunit
FTW_0002 dnaN; DNA polymerase III, beta subunit
FTW_1787 holC; DNA polymerase III (CHI subunit) protein
FTW_1894 holA; DNA polymerase III, delta subunit
FTW_1610 putative DNA polymerase III, delta prime subunit
FTW_0993 dnaQ; DNA polymerase III, epsilon subunit
FTW_1901 dnaX; DNA polymerase III subunit gamma/tau
FTW_1990 ssb; single-strand binding protein
FTW_0494 recB; exodeoxyribonuclease V, beta subunit
FTW_0491 recC; exodeoxyribonuclease V, gamma subunit
FTW_0495 recD; exodeoxyribonuclease V, alpha subunit
FTW_1988 recA; Recombinase A
FTW_1070 ruvA; holliday junction DNA helicase RuvA
FTW_0920 ruvB; holliday junction DNA helicase RuvB
FTW_1072 ruvC; crossover junction endodeoxyribonuclease RuvC
FTW_1872 priA; primosomal protein N'
FTW_1307 radA; DNA repair protein RadA
FTW_0673 DNA replication and repair protein RecF
FTW_0333 recG; ATP-dependent DNA helicase RecG
FTW_0722 recO; DNA repair protein RecO
FTW_0606 recR; recombination protein RecR
FTW_1293 recN; DNA repair protein RecN
FTW_1390 putative exonuclease family protein
FTW_0351 gyrA; DNA gyrase, A subunit
FTW_1555 gyrB; DNA gyrase, B subunit
FTW_1273 topA; DNA topoisomerase I
FTW_1102 hup; DNA-binding protein HU-beta
FTW_0487 Peptidase S24-like domain protein/prophage repressor protein
FTW_1989 recX; regulatory protein RecX
FTW_1393 ATP-dependent DNA helicase/UvrD/REP helicase
FTW_1008 nrdA; ribonucleoside-diphosphate reductase, alpha chain
FTW_1010 biofunctional glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase beta subunit
|
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
|
03029 Mitochondrial biogenesis [BR:ftw03029]
|
|
|
09183 Protein families: signaling and cellular processes
|
|
|
09185 Viral protein families
|
|
|
09184 RNA family
|
|
|
09190 Not Included in Pathway or Brite
|
KEGG Orthology (KO) - Francisella tularensis subsp. tularensis WY96-3418