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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:geo03030]
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03410 Base excision repair [PATH:geo03410]
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03420 Nucleotide excision repair [PATH:geo03420]
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03430 Mismatch repair [PATH:geo03430]
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03440 Homologous recombination [PATH:geo03440]
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 Geob_3446 recJ; single-stranded DNA-specific exonuclease RecJ
Geob_3793 ssb; single-strand-binding protein
Geob_0003 recF; DNA replication and repair protein RecF
Geob_1747 recO; DNA repair protein RecO
Geob_0376 recR; recombination protein RecR
Geob_1115 recA; recombinase A
Geob_1408 polA; DNA polymerase I
Geob_2324 ruvA; Holliday junction DNA helicase RuvA
Geob_2323 ruvB; Holliday junction DNA helicase RuvB
Geob_2325 ruvC; crossover junction endodeoxyribonuclease RuvC
Geob_2607 recG; ATP-dependent DNA helicase RecG
Geob_1389 recB; exodeoxyribonuclease V, beta subunit
Geob_1390 recC; exodeoxyribonuclease V, gamma subunit
Geob_1388 recD; exodeoxyribonuclease V, alpha subunit
Geob_3293 dnaE; DNA polymerase III, alpha subunit
Geob_0002 dnaN; DNA polymerase III, beta subunit
Geob_0378 dnaX; DNA polymerase III, gamma and tau subunits
Geob_2173 holA; DNA polymerase III, delta subunit
Geob_2151 holB; DNA polymerase III, delta-prime subunit
Geob_1312 priA; primosomal protein N', ATP-dependent helicase
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:geo03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:geo03000]
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03021 Transcription machinery [BR:geo03021]
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03019 Messenger RNA biogenesis [BR:geo03019]
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03041 Spliceosome
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03011 Ribosome [BR:geo03011]
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03009 Ribosome biogenesis [BR:geo03009]
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03016 Transfer RNA biogenesis [BR:geo03016]
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03012 Translation factors [BR:geo03012]
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03110 Chaperones and folding catalysts [BR:geo03110]
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04131 Membrane trafficking [BR:geo04131]
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04121 Ubiquitin system [BR:geo04121]
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03051 Proteasome [BR:geo03051]
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03032 DNA replication proteins [BR:geo03032]
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03036 Chromosome and associated proteins [BR:geo03036]
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03400 DNA repair and recombination proteins [BR:geo03400]
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Geob_1878 ogt; methylated DNA--protein cysteine S-methyltransferase
Geob_1689 aag; 3-methyladenine-DNA glycosylase
Geob_3733 hypothetical protein
Geob_2394 endonuclease III-related DNA glycosidase, HhH-GPD superfamily
Geob_2572 DNA helicase, DEAD_2 domain-containing
Geob_3053 NUDIX hydrolase
Geob_2829 NUDIX hydrolase, MutT family
Geob_0660 NUDIX hydrolase
Geob_1125 NUDIX hydrolase, type 15
Geob_3779 NUDIX hydrolase
Geob_2699 dut; deoxyuridine-5'-triphosphate pyrophosphohydrolase
Geob_3525 uracil-DNA glycosylase
Geob_1575 mutM-1; formamidopyrimidine-DNA glycosylase
Geob_0290 mutM-2; formamidopyrimidine-DNA glycosylase
Geob_1397 nfo; endodeoxyribonuclease IV
Geob_3446 recJ; single-stranded DNA-specific exonuclease RecJ
Geob_1970 ligA; DNA ligase, NAD-dependent
Geob_1408 polA; DNA polymerase I
Geob_3812 uvrA; excinuclease ABC, A subunit
Geob_1232 uvrB; excinuclease ABC, B subunit
Geob_1305 uvrC; excinuclease ABC, C subunit
Geob_1974 rep; ATP-dependent DNA helicase Rep
Geob_0379 pcrA; ATP-dependent DNA helicase PcrA
Geob_3632 rpoB; DNA-directed RNA polymerase, beta subunit
Geob_3631 rpoC; DNA-directed RNA polymerase, beta-prime subunit
Geob_3599 rpoA; DNA-directed RNA polymerase, alpha subunit
Geob_2144 rpoZ; DNA-directed RNA polymerase, omega subunit
Geob_3711 mfd; transcription-repair coupling factor
Geob_2761 mutS-1; DNA mismatch repair ATPase MutS-1
Geob_1751 mutS-2; endonuclease and ATPase MutS-2
Geob_3108 mutL; DNA mismatch repair protein MutL
Geob_2626 xseA; exodeoxyribonuclease VII, large subunit
Geob_2627 xseB; exodeoxyribonuclease VII, small subunit
Geob_3293 dnaE; DNA polymerase III, alpha subunit
Geob_0002 dnaN; DNA polymerase III, beta subunit
Geob_2173 holA; DNA polymerase III, delta subunit
Geob_2151 holB; DNA polymerase III, delta-prime subunit
Geob_0378 dnaX; DNA polymerase III, gamma and tau subunits
Geob_3793 ssb; single-strand-binding protein
Geob_0709 DNA G:T-mismatch repair endonuclease Vsr
Geob_1389 recB; exodeoxyribonuclease V, beta subunit
Geob_1390 recC; exodeoxyribonuclease V, gamma subunit
Geob_1388 recD; exodeoxyribonuclease V, alpha subunit
Geob_1115 recA; recombinase A
Geob_2324 ruvA; Holliday junction DNA helicase RuvA
Geob_2323 ruvB; Holliday junction DNA helicase RuvB
Geob_2325 ruvC; crossover junction endodeoxyribonuclease RuvC
Geob_1312 priA; primosomal protein N', ATP-dependent helicase
Geob_3181 sbcC; DNA repair exonuclease SbcCD, C subunit, putative
Geob_3183 sbcD; DNA repair exonuclease SbcCD, D subunit, putative
Geob_3703 radA; DNA repair protein RadA
Geob_0003 recF; DNA replication and repair protein RecF
Geob_2607 recG; ATP-dependent DNA helicase RecG
Geob_1747 recO; DNA repair protein RecO
Geob_0376 recR; recombination protein RecR
Geob_3460 recN; DNA repair ATPase RecN
Geob_0389 hypothetical protein
Geob_3410 cas1; CRISPR-associated endodeoxyribonuclease Cas1
Geob_0337 DNA-binding Ku protein
Geob_0336 ligD; DNA ligase D, ATP-dependent
Geob_0005 gyrA; DNA gyrase, A subunit
Geob_0004 gyrB; DNA gyrase, B subunit
Geob_1558 topA; DNA topoisomerase I
Geob_3817 hup-1; histone-like protein
Geob_3359 ihfA-1; integration host factor, alpha subunit
Geob_2365 ihfB-2; integration host factor, beta subunit
Geob_2788 ihfB-1; integration host factor, beta subunit
Geob_0406 recQ; ATP-dependent DNA helicase RecQ
Geob_3171 DNA polymerase IV
Geob_1117 recX; recombination regulator RecX
Geob_1150 DNA polymerase IV (family X) domain and PHP phosphoesterase domain protein PRK08609
Geob_0618 dinG; ATP-dependent DNA helicase DinG
Geob_3024 nrdJ; ribonucleoside-5'-diphosphate reductase, adenosylcobamide-dependent
Geob_2694 phosphoesterase, putative
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:geo03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Geotalea daltonii