| |
KO |
 09100 Metabolism
|
|
|
 09120 Genetic Information Processing
|
|
|
09121 Transcription
|
|
|
09122 Translation
|
|
|
09123 Folding, sorting and degradation
|
|
|
09124 Replication and repair
|
03030 DNA replication [PATH:gme03030]
|
03410 Base excision repair [PATH:gme03410]
|
03420 Nucleotide excision repair [PATH:gme03420]
|
03430 Mismatch repair [PATH:gme03430]
|
03440 Homologous recombination [PATH:gme03440]
|
 Gmet_0857 recJ; single-stranded DNA-specific exonuclease RecJ
Gmet_0362 ssb; single-strand-binding protein
Gmet_0003 recF; DNA replication and repair protein RecF
Gmet_2943 recO; DNA repair protein RecO
Gmet_3420 recR; recombination protein RecR
Gmet_0198 recA; recombinase A
Gmet_2983 polA; DNA polymerase I
Gmet_0745 ruvA; Holliday junction DNA helicase RuvA
Gmet_0746 ruvB; Holliday junction DNA helicase RuvB
Gmet_0744 ruvC; crossover junction endodeoxyribonuclease RuvC
Gmet_1777 recG; ATP-dependent DNA helicase RecG
Gmet_1893 recB; exodeoxyribonuclease V, beta subunit
Gmet_1894 recC; exodeoxyribonuclease V, gamma subunit
Gmet_1892 recD; exodeoxyribonuclease V, alpha subunit
Gmet_1215 dnaE; DNA polymerase III, alpha subunit
Gmet_0002 dnaN; DNA polymerase III, beta subunit
Gmet_3422 dnaX; DNA polymerase III, gamma and tau subunits
Gmet_2298 holA; DNA polymerase III, delta subunit
Gmet_2319 holB; DNA polymerase III, delta-prime subunit
Gmet_3055 3'-to-5' exonuclease, putative
Gmet_3337 priA; primosomal protein N', ATP-dependent helicase
|
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
|
03450 Non-homologous end-joining
|
03460 Fanconi anemia pathway
|
|
|
09126 Chromosome
|
|
|
09125 Information processing in viruses
|
|
|
09130 Environmental Information Processing
|
|
|
09140 Cellular Processes
|
|
|
09150 Organismal Systems
|
|
|
09160 Human Diseases
|
|
|
09180 Brite Hierarchies
|
|
|
09181 Protein families: metabolism
|
|
|
09182 Protein families: genetic information processing
|
03000 Transcription factors [BR:gme03000]
|
03021 Transcription machinery [BR:gme03021]
|
03019 Messenger RNA biogenesis [BR:gme03019]
|
03041 Spliceosome
|
03011 Ribosome [BR:gme03011]
|
03009 Ribosome biogenesis [BR:gme03009]
|
03016 Transfer RNA biogenesis [BR:gme03016]
|
03012 Translation factors [BR:gme03012]
|
03110 Chaperones and folding catalysts [BR:gme03110]
|
04131 Membrane trafficking [BR:gme04131]
|
04121 Ubiquitin system [BR:gme04121]
|
03051 Proteasome [BR:gme03051]
|
03032 DNA replication proteins [BR:gme03032]
|
03036 Chromosome and associated proteins [BR:gme03036]
|
03400 DNA repair and recombination proteins [BR:gme03400]
|
Gmet_0090 ogt; methylated DNA--protein cysteine S-methyltransferase
Gmet_0095 hypothetical protein
Gmet_1654 endonuclease III family protein
Gmet_1973 endonuclease III-related DNA glycosidase, HhH-GPD superfamily
Gmet_0207 NUDIX hydrolase, type 15
Gmet_1170 NUDIX hydrolase, MutT family
Gmet_3309 NUDIX hydrolase
Gmet_1790 NUDIX hydrolase, MutT family
Gmet_0988 NUDIX hydrolase
Gmet_1593 dut; deoxyuridine-5'-triphosphate pyrophosphohydrolase
Gmet_2671 uracil-DNA glycosylase
Gmet_1206 mutM; formamidopyrimidine-DNA glycosylase
Gmet_2994 nfo; endodeoxyribonuclease IV
Gmet_0857 recJ; single-stranded DNA-specific exonuclease RecJ
Gmet_2728 ligA; DNA ligase, NAD-dependent
Gmet_2983 polA; DNA polymerase I
Gmet_2580 excinuclease ABC family protein
Gmet_0128 uvrA; excinuclease ABC, A subunit
Gmet_3219 uvrB; excinuclease ABC, B subunit
Gmet_3228 uvrC; excinuclease ABC, C subunit
Gmet_0089 pcrA; ATP-dependent DNA helicase PcrA
Gmet_0619 rpoB; DNA-directed RNA polymerase, beta subunit
Gmet_0620 rpoC; DNA-directed RNA polymerase, beta-prime subunit
Gmet_0653 rpoA; DNA-directed RNA polymerase, alpha subunit
Gmet_2326 rpoZ; DNA-directed RNA polymerase, omega subunit
Gmet_3547 mfd; transcription-repair coupling factor
Gmet_1424 mutS-1; DNA mismatch repair ATPase MutS-1
Gmet_2974 mutS-2; DNA mismatch repair ATPase MutS-2
Gmet_2053 mutL; DNA mismatch repair protein MutL
Gmet_1848 xseA; exodeoxyribonuclease VII, large subunit
Gmet_1936 xseB; exodeoxyribonuclease VII, small subunit
Gmet_1215 dnaE; DNA polymerase III, alpha subunit
Gmet_0002 dnaN; DNA polymerase III, beta subunit
Gmet_2298 holA; DNA polymerase III, delta subunit
Gmet_2319 holB; DNA polymerase III, delta-prime subunit
Gmet_3055 3'-to-5' exonuclease, putative
Gmet_3422 dnaX; DNA polymerase III, gamma and tau subunits
Gmet_0362 ssb; single-strand-binding protein
Gmet_3140 DNA adenine N6-methyltransferase
Gmet_1893 recB; exodeoxyribonuclease V, beta subunit
Gmet_1894 recC; exodeoxyribonuclease V, gamma subunit
Gmet_1892 recD; exodeoxyribonuclease V, alpha subunit
Gmet_0198 recA; recombinase A
Gmet_0745 ruvA; Holliday junction DNA helicase RuvA
Gmet_0746 ruvB; Holliday junction DNA helicase RuvB
Gmet_0744 ruvC; crossover junction endodeoxyribonuclease RuvC
Gmet_3337 priA; primosomal protein N', ATP-dependent helicase
Gmet_3277 radA; DNA repair protein RadA
Gmet_0003 recF; DNA replication and repair protein RecF
Gmet_1777 recG; ATP-dependent DNA helicase RecG
Gmet_2943 recO; DNA repair protein RecO
Gmet_3420 recR; recombination protein RecR
Gmet_0942 recN; DNA repair ATPase RecN
Gmet_0185 hypothetical protein
Gmet_1072 cas1; CRISPR-associated endodeoxyribonuclease Cas1
Gmet_0767 protein of unknown function DUF853
Gmet_0005 gyrA; DNA gyrase, A subunit
Gmet_0004 gyrB; DNA gyrase, B subunit
Gmet_0891 topA; DNA topoisomerase I
Gmet_1608 hup-2; histone-like protein
Gmet_0355 hup-1; histone-like protein
Gmet_1417 ihfA-1; integration host factor, alpha subunit
Gmet_3056 ihfA-4; integration host factor, alpha subunit
Gmet_3057 ihfA-3; integration host factor subunit, alpha subunit
Gmet_0868 ihfB-2; integration host factor, beta subunit
Gmet_1833 ihfB-1; integration host factor, beta subunit
Gmet_2717 recQ; ATP-dependent DNA helicase RecQ
Gmet_1441 DNA polymerase IV
Gmet_1439 lexA; transcriptional repressor, LexA family
Gmet_0074 hypothetical protein
Gmet_0200 recX; recombination regulator RecX
Gmet_2724 rep; ATP-dependent DNA helicase Rep
Gmet_3167 dinG; ATP-dependent DNA helicase DinG
Gmet_1297 nrdJ; ribonucleoside diphosphate reductase, adenosylcobalamin-dependent
Gmet_1910 ribonucleoside diphosphate reductase, adenosylcobalamin-dependent, putative
Gmet_1588 phosphoesterase, putative
|
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K04764 ihfA; integration host factor subunit alpha
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14623 dinD; DNA-damage-inducible protein D
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
|
03029 Mitochondrial biogenesis [BR:gme03029]
|
|
|
09183 Protein families: signaling and cellular processes
|
|
|
09185 Viral protein families
|
|
|
09184 RNA family
|
|
|
09190 Not Included in Pathway or Brite
|
KEGG Orthology (KO) - Geobacter metallireducens