| |
KO |
 09100 Metabolism
|
|
|
 09120 Genetic Information Processing
|
|
|
09121 Transcription
|
|
|
09122 Translation
|
|
|
09123 Folding, sorting and degradation
|
|
|
09124 Replication and repair
|
03030 DNA replication [PATH:gni03030]
|
03410 Base excision repair [PATH:gni03410]
|
 GNIT_2250 endonuclease III
GNIT_2754 uracil-DNA glycosylase
GNIT_3194 mutY; A/G-specific adenine glycosylase
GNIT_0058 mutM; formamidopyrimidine-DNA glycosylase
GNIT_0281 nei; endonuclease VIII
GNIT_3341 AraC family transcriptional regulator
GNIT_0010 tag; DNA-3-methyladenine glycosylase I
GNIT_0420 Exodeoxyribonuclease III
GNIT_0015 polA; DNA polymerase I
GNIT_0718 recJ; single-stranded-DNA-specific exonuclease RecJ
GNIT_2055 DNA ligase, NAD-dependent
|
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
|
03420 Nucleotide excision repair [PATH:gni03420]
|
03430 Mismatch repair [PATH:gni03430]
|
03440 Homologous recombination [PATH:gni03440]
|
03450 Non-homologous end-joining
|
03460 Fanconi anemia pathway
|
|
|
09126 Chromosome
|
|
|
09125 Information processing in viruses
|
|
|
09130 Environmental Information Processing
|
|
|
09140 Cellular Processes
|
|
|
09150 Organismal Systems
|
|
|
09160 Human Diseases
|
|
|
09180 Brite Hierarchies
|
|
|
09181 Protein families: metabolism
|
|
|
09182 Protein families: genetic information processing
|
03000 Transcription factors [BR:gni03000]
|
03021 Transcription machinery [BR:gni03021]
|
03019 Messenger RNA biogenesis [BR:gni03019]
|
03041 Spliceosome
|
03011 Ribosome [BR:gni03011]
|
03009 Ribosome biogenesis [BR:gni03009]
|
03016 Transfer RNA biogenesis [BR:gni03016]
|
03012 Translation factors [BR:gni03012]
|
03110 Chaperones and folding catalysts [BR:gni03110]
|
04131 Membrane trafficking [BR:gni04131]
|
04121 Ubiquitin system [BR:gni04121]
|
03051 Proteasome [BR:gni03051]
|
03032 DNA replication proteins [BR:gni03032]
|
03036 Chromosome and associated proteins [BR:gni03036]
|
03400 DNA repair and recombination proteins [BR:gni03400]
|
GNIT_3340 methylated-DNA--protein-cysteine methyltransferase
GNIT_1871 phrB; DNA photolyase
GNIT_1873 phrB; deoxyribodipyrimidine photolyase
GNIT_2754 uracil-DNA glycosylase
GNIT_3194 mutY; A/G-specific adenine glycosylase
GNIT_2250 endonuclease III
GNIT_0314 S1/P1 nuclease
GNIT_2687 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP
GNIT_1870 deoxyribodipyrimidine photolyase-related protein
GNIT_3341 AraC family transcriptional regulator
GNIT_0010 tag; DNA-3-methyladenine glycosylase I
GNIT_0058 mutM; formamidopyrimidine-DNA glycosylase
GNIT_0281 nei; endonuclease VIII
GNIT_0420 Exodeoxyribonuclease III
GNIT_0718 recJ; single-stranded-DNA-specific exonuclease RecJ
GNIT_2055 DNA ligase, NAD-dependent
GNIT_0015 polA; DNA polymerase I
GNIT_0327 uvrA; excinuclease ABC subunit A
GNIT_3420 uvrA; excinuclease ABC, A subunit
GNIT_2240 uvrB; excinuclease ABC subunit B
GNIT_1799 uvrC; excinuclease ABC subunit C
GNIT_0296 uvrD; DNA helicase II
GNIT_3044 rpoB; DNA-directed RNA polymerase subunit beta
GNIT_3043 rpoC; DNA-directed RNA polymerase subunit beta'
GNIT_0659 rpoA; DNA-directed RNA polymerase alpha subunit
GNIT_0212 rpoZ; DNA-directed RNA polymerase subunit omega
GNIT_1677 mfd; transcription-repair coupling factor
GNIT_2509 mutS; DNA mismatch repair protein(MutS)
GNIT_3143 mutL; DNA mismatch repair protein
GNIT_0550 mutH; DNA mismatch repair protein
GNIT_1703 sbcB; exodeoxyribonuclease I
GNIT_1034 xseA; exodeoxyribonuclease VII, large subunit
GNIT_1113 xseB; exodeoxyribonuclease VII small subunit
GNIT_2443 dnaE; DNA polymerase III subunit alpha
GNIT_0002 dnaN; DNA polymerase III, beta subunit
GNIT_0846 DNA polymerase III chi subunit
GNIT_2078 DNA polymerase III, delta subunit
GNIT_1737 holB; DNA polymerase III subunit delta
GNIT_1709 DNA polymerase III, epsilon subunit
GNIT_2778 putative DNA polymerase, exonuclease activity
GNIT_3639 DNA polymerase III, epsilon subunit
GNIT_0330 ssb; single-strand binding protein
GNIT_0467 dam; putative DNA adenine methylase
GNIT_1550 recB; exodeoxyribonuclease V, beta subunit
GNIT_1549 recC; exodeoxyribonuclease V, gamma subunit
GNIT_1551 recD; exodeoxyribonuclease V, alpha subunit
GNIT_2507 recA; RecA recombinase
GNIT_1234 ruvA; Holliday junction DNA helicase RuvA
GNIT_1235 ruvB; Holliday junction DNA helicase RuvB
GNIT_1233 ruvC; Holliday junction resolvase
GNIT_2903 priA; primosome assembly protein
GNIT_3711 flavodoxin
GNIT_1098 sms; DNA repair protein RadA
GNIT_0003 recF; recombinational DNA repair ATPase
GNIT_0219 recG; ATP-dependent DNA helicase RecG
GNIT_0720 recO; DNA repair protein RecO
GNIT_1143 recR; recombination protein RecR
GNIT_2195 recN; DNA repair protein RecN
GNIT_2813 rdgC; recombination associated protein
GNIT_1776 gyrA; DNA gyrase subunit A
GNIT_0004 gyrB; DNA gyrase, subunit B (type II topoisomerase)
GNIT_1720 topA; DNA topoisomerase I
GNIT_1055 hupB; histone-like DNA-binding protein
GNIT_3455 fis; Factor for inversion stimulation Fis, transcriptional activator
GNIT_1671 ihfA; integration host factor subunit alpha
GNIT_1781 ihfB; integration host factor subunit beta
GNIT_0275 recQ; ATP-dependent DNA helicase
GNIT_1475 recQ; ATP-dependent DNA helicase recQ
GNIT_0773 DNA polymerase IV
GNIT_3570 lexA; LexA repressor
GNIT_0082 DNA polymerase II
GNIT_0039 nucleotidyltransferase/DNA polymerase involved in DNA repair
GNIT_0038 dnaE; DNA polymerase III, alpha subunit
GNIT_2331 recX; regulatory protein
GNIT_1979 dpx; DNA polymerase X
GNIT_0071 rep; ATP-dependent DNA helicase Rep
GNIT_2228 dinG; ATP-dependent helicase
GNIT_3078 lhr; large atp-dependent helicase-related protein
GNIT_1773 nrdA; ribonucleotide-diphosphate reductase subunit alpha
GNIT_1772 nrdB; ribonucleotide-diphosphate reductase beta subunit
|
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K05986 NUCS; nuclease S1 [EC:3.1.30.1]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02317 dnaT; DNA replication protein DnaT
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
|
03029 Mitochondrial biogenesis [BR:gni03029]
|
|
|
09183 Protein families: signaling and cellular processes
|
|
|
09185 Viral protein families
|
|
|
09184 RNA family
|
|
|
09190 Not Included in Pathway or Brite
|
KEGG Orthology (KO) - Glaciecola nitratireducens