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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:hso03030]
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03410 Base excision repair [PATH:hso03410]
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 HS_1065 nth; DNA-(apurinic or apyrimidinic site) lyase
HS_0481 ung; Uracil-DNA glycosylase
HS_1667 mutY; A/G-specific DNA-adenine glycosylase
HS_0146 mutM; DNA-(apurinic or apyrimidinic site) lyase
HS_0836 xthA; Exodeoxyribonuclease III
HS_0718 polA; DNA polymerase I
HS_1474 recJ; exonuclease RecJ
HS_0377 lig; DNA ligase (NAD+)
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K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03420 Nucleotide excision repair [PATH:hso03420]
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03430 Mismatch repair [PATH:hso03430]
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03440 Homologous recombination [PATH:hso03440]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:hso03000]
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03021 Transcription machinery [BR:hso03021]
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03019 Messenger RNA biogenesis [BR:hso03019]
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03041 Spliceosome
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03011 Ribosome [BR:hso03011]
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03009 Ribosome biogenesis [BR:hso03009]
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03016 Transfer RNA biogenesis [BR:hso03016]
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03012 Translation factors [BR:hso03012]
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03110 Chaperones and folding catalysts [BR:hso03110]
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04131 Membrane trafficking [BR:hso04131]
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04121 Ubiquitin system [BR:hso04121]
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03051 Proteasome [BR:hso03051]
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03032 DNA replication proteins [BR:hso03032]
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03036 Chromosome and associated proteins [BR:hso03036]
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03400 DNA repair and recombination proteins [BR:hso03400]
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HS_1549 dat1; methylated-DNA-protein-cysteine methyltransferase
HS_0481 ung; Uracil-DNA glycosylase
HS_1667 mutY; A/G-specific DNA-adenine glycosylase
HS_1065 nth; DNA-(apurinic or apyrimidinic site) lyase
HS_0991 mutT; 8-oxo-dGTPase
HS_0142 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
HS_0146 mutM; DNA-(apurinic or apyrimidinic site) lyase
HS_0836 xthA; Exodeoxyribonuclease III
HS_1474 recJ; exonuclease RecJ
HS_0377 lig; DNA ligase (NAD+)
HS_0718 polA; DNA polymerase I
HS_1128 uvrA; Excinuclease ABC subunit A
HS_1617 uvrB; Excinuclease ABC subunit B
HS_0659 uvrC; Excinuclease ABC subunit C
HS_0497 uvrD; ATP-dependent DNA helicase UvrD
HS_1565 rpoB; DNA-directed RNA polymerase subunit beta
HS_1564 rpoC; DNA-directed RNA polymerase subunit beta'
HS_0084 rpoA; DNA-directed RNA polymerase subunit alpha
HS_1456 rpoZ; DNA-directed RNA polymerase subunit omega
HS_1161 mfd; transcription-repair coupling factor
HS_0005 mutS; DNA mismatch repair protein MutS
HS_1083 mutL; DNA mismatch repair protein MutL
HS_1550 mutH; DNA mismatch repair protein MutH
HS_0872 sbcB; Exodeoxyribonuclease I subunit C
HS_1216 xseA; Exodeoxyribonuclease VII large subunit
HS_0903 xseB; Exodeoxyribonuclease VII small subunit
HS_0198 dnaE; DNA polymerase III, alpha subunit
HS_0137 dnaN; DNA polymerase III, beta subunit
HS_1264 holC; DNA polymerase III, chi subunit
HS_1555 holA; DNA polymerase III, delta subunit
HS_1486 holB; DNA polymerase III, delta prime subunit
HS_0603 dnaQ; DNA polymerase III, epsilon subunit
HS_0301 dnaQ; DNA polymerase III, epsilon subunit
HS_1200 dnaX; DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
HS_0490 holD; DNA polymerase III, psi subunit
HS_1129 ssb; single-strand binding protein
HS_1729 ssb; single-strand binding protein
HS_1115 dam; DNA adenine methylase Dam
HS_0929 recB; DNA helicase/exodeoxyribonuclease V, beta subunit
HS_0268 recC; DNA helicase/exodeoxyribonuclease V, gamma subunit
HS_0928 recD; DNA helicase/exodeoxyribonuclease V, alpha subunit
HS_1303 recA; RecA protein
HS_0269 ruvA; Holliday junction DNA helicase subunit RuvA
HS_0270 ruvB; Holliday junction DNA helicase subunit RuvB
HS_0509 ruvC; Holliday junction endonuclease RuvC
HS_1123 priA; replication restart DNA helicase PriA
HS_1437 priB; restart primosome assembly protein PriB
HS_1015 conserved hypothetical protein
HS_1188 radA; DNA repair protein
HS_0138 recF; DNA replication and repair protein RecF
HS_1454 recG; ATP-dependent DNA helicase
HS_0100 conserved hypothetical protein
HS_0093 recO; DNA replication and repair protein RecO
HS_1308 recR; DNA replication and repair protein RecR
HS_0651 recN; DNA replication and repair protein RecN
HS_1286 rdgC; recombination associated protein
HS_1163 gyrA; DNA gyrase subunit A
HS_1708 gyrB; DNA gyrase subunit B
HS_0914 topA; DNA topoisomerase I
HS_1538 hupA; DNA-binding protein HU
HS_1419 conserved hypothetical protein
HS_0564 fis; DNA-binding protein Fis
HS_0862 himA; integration host factor, alpha-subunit
HS_0975 ihfB; integration host factor, beta-subunit
HS_1711 recQ; ATP-dependent DNA helicase RecQ
HS_0787 hns; DNA-binding protein H-NS
HS_0931 dinP; DNA-damage-inducible protein P, DNA polymerase IV (Pol IV)
HS_0386 lexA; SOS-response transcriptional repressor, LexA
HS_1304 recX; regulatory protein
HS_0719 rep; ATP-dependent DNA helicase Rep
HS_0733 dinG; ATP-dependent DNA helicase
HS_1196 nrdA; ribonucleoside-diphosphate reductase class Ia alpha subunit
HS_0961 nrdB; ribonucleoside-diphosphate reductase class Ia beta subunit
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K07455 recT; recombination protein RecT
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:hso03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Histophilus somni 129PT