KEGG Organisms

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 Eukaryotes (541)
 
   Animals (250)
     Vertebrates (146)
       Mammals (66)
       Birds (24)
       Reptiles (12)
       Amphibians (3)
       Fishes (39)
       Cartilaginous fishes (2)
 
 
 
 
 
 
     Lancelets (1)
     Ascidians (1)
     Echinoderms (2)
     Hemichordates (1)
     Arthropods (72)
       Insects (65)
       Crustaceans (2)
       Chelicerates (5)
 
 
 
     Nematodes (6)
     Annelids (1)
     Mollusks (5)
     Brachiopodas (1)
     Flatworms (4)
     Cnidarians (8)
     Placozoans (1)
     Poriferans (1)
 
   Plants (106)
     Eudicots (75)
       Mustard family (9)
       Caper family (1)
       Papaya family (1)
       Rue family (2)
       Mallow family (5)
       Myrtle family (1)
       Pea family (13)
       Rose family (7)
       Buckthorn family (1)
       Cucumber family (6)
       Spurge family (4)
       Willow family (2)
       Walnut family (1)
       Beech family (1)
       Grape family (1)
       Nightshade family (8)
       Morning-glory family (1)
       Sesame family (1)
       Olive family (1)
       Daisy family (3)
       Parsley family (1)
       Amaranth family (3)
       Lotus family (1)
       Poppy family (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Monocots (14)
       Grass family (8)
       Palm family (2)
       Banana family (1)
       Orchid family (2)
       Asparagus family (1)
 
 
 
 
 
     Basal Magnoliophyta (1)
       Amborella family (1)
 
     Ferns (1)
     Mosses (1)
     Green algae (11)
     Red algae (3)
 
   Fungi (133)
     Ascomycetes (95)
       Saccharomycetes (32)
       Sordariomycetes (27)
       Leotiomycetes (5)
       Eurotiomycetes (19)
       Dothideomycetes (10)
       Pezizomycetes (1)
       Schizosaccharomycetes (1)
 
 
 
 
 
 
 
     Basidiomycetes (33)
     Microsporidians (5)
 
   Protists (52)
     Choanoflagellates (2)
     Amoebozoa (7)
       Dictyostelia (3)
       Entamoeba (3)
       Acanthamoeba (1)
 
 
 
     Alveolates (21)
       Apicomplexans (18)
       Ciliates (2)
       Dinoflagellates (1)
 
 
 
     Stramenopiles (8)
       Diatoms (3)
       Eustigmatophytes (1)
       Pelagophytes (1)
       Oomycetes (3)
 
 
 
 
     Haptophyta (1)
     Cryptomonads (1)
     Euglenozoa (9)
       Kinetoplasts (9)
 
     Heterolobosea (1)
       Tetramitia (1)
 
     Metamonada (2)
       Trichomonads (1)
       Diplomonads (1)
 
 
 
 Prokaryotes (6109)
 
   Bacteria (5783)
     Gammaproteobacteria - Enterobacteria (511)
       Escherichia (69)
         eco  Escherichia coli K-12 MG1655
         ecj  Escherichia coli K-12 W3110
         ebw  Escherichia coli K-12 BW2952
         ecok  Escherichia coli K-12 MDS42
         ece  Escherichia coli O157:H7 EDL933 (EHEC)
         ecs  Escherichia coli O157:H7 Sakai (EHEC)
         ecf  Escherichia coli O157:H7 EC4115 (EHEC)
         etw  Escherichia coli O157:H7 TW14359 (EHEC)
         elx  Escherichia coli O157:H7 Xuzhou21 (EHEC)
         eoi  Escherichia coli O111:H- 11128 (EHEC)
         eoj  Escherichia coli O26:H11 11368 (EHEC)
         eoh  Escherichia coli O103:H2 12009 (EHEC)
         ecoo  Escherichia coli O145:H28 RM13514 (EHEC)
         ecoh  Escherichia coli O145:H28 RM13516 (EHEC)
         esl  Escherichia coli O104:H4 2011C-3493 (EAEC)
         eso  Escherichia coli O104:H4 2009EL-2071 (EAEC)
         esm  Escherichia coli O104:H4 2009EL-2050 (EAEC)
         eck  Escherichia coli 55989 (EAEC)
         eok  Escherichia coli O55:H7 CB9615 (EPEC)
         elr  Escherichia coli O55:H7 RM12579 (EPEC)
         elh  Escherichia coli O78:H11:K80 H10407 (ETEC)
         ecw  Escherichia coli O139:H28 E24377A (ETEC)
         eun  Escherichia coli UMNK88 (ETEC, porcine)
         ena  Escherichia coli NA114 (UPEC)
         ecos  Escherichia coli O25b:K100:H4-ST131 EC958 (UPEC)
         ecoa  Escherichia coli APEC O78 (APEC)
         ecx  Escherichia coli O9 HS (commensal)
         ecm  Escherichia coli SMS-3-5 (environmental)
         ecy  Escherichia coli O152:H28 SE11 (commensal)
         ecr  Escherichia coli O8 IAI1 (commensal)
         ecq  Escherichia coli O81 ED1a (commensal)
         eum  Escherichia coli O17:K52:H18 UMN026 (ExPEC)
         ect  Escherichia coli O7:K1 IAI39 (ExPEC)
         eoc  Escherichia coli O7:K1 CE10
         ebr  Escherichia coli B REL606
         ebl  Escherichia coli BL21(DE3)
         ebe  Escherichia coli BL21(DE3)
         ebd  Escherichia coli BL21-Gold(DE3)pLysS AG
         elo  Escherichia coli O44:H18 042 (EAEC)
         ese  Escherichia coli O150:H5 SE15 (commensal)
         ecl  Escherichia coli ATCC 8739
         eko  Escherichia coli KO11FL
         ekf  Escherichia coli KO11FL
         edh  Escherichia coli DH1
         edj  Escherichia coli DH1
         elw  Escherichia coli W
         ell  Escherichia coli W
         elp  Escherichia coli P12b
         ecol  Escherichia coli LY180
         ecoj  Escherichia coli JJ1886
         efe  Escherichia fergusonii
         ema  Escherichia marmotae
         esz  Escherichia sp. E4742
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       Salmonella (54)
       Shigella (13)
         ssn  Shigella sonnei Ss046
         shq  Shigella sp. PAMC 28760
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       Enterobacter (31)
         eas  Enterobacter soli
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       Cronobacter (11)
       Klebsiella (42)
         kpn  Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (serotype K52)
         kpu  Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 (serotype K1)
         kpm  Klebsiella pneumoniae subsp. pneumoniae HS11286
         kpp  Klebsiella pneumoniae subsp. pneumoniae 1084 (serotype K1)
         kph  Klebsiella pneumoniae subsp. pneumoniae KPNIH24
         kpz  Klebsiella pneumoniae subsp. pneumoniae KPNIH27
         kpv  Klebsiella pneumoniae subsp. pneumoniae KPNIH29
         kpw  Klebsiella pneumoniae subsp. pneumoniae KPNIH30
         kpy  Klebsiella pneumoniae subsp. pneumoniae KPNIH31
         kpg  Klebsiella pneumoniae subsp. pneumoniae KPNIH32
         kpc  Klebsiella pneumoniae subsp. pneumoniae KPNIH10
         kpq  Klebsiella pneumoniae subsp. pneumoniae KPR0928
         kpt  Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 KPPR1
         kpo  Klebsiella pneumoniae KCTC 2242
         kpr  Klebsiella pneumoniae subsp. rhinoscleromatis SB3432
         kpj  Klebsiella pneumoniae JM45
         kpi  Klebsiella pneumoniae CG43
         kpa  Klebsiella pneumoniae 30660/NJST258_1
         kps  Klebsiella pneumoniae 30684/NJST258_2
         kpx  Klebsiella pneumoniae PMK1
         kpb  Klebsiella pneumoniae blaNDM-1
         kpne  Klebsiella pneumoniae 32192
         kpnu  Klebsiella pneumoniae 34618
         kpnk  Klebsiella pneumoniae Kp52.145
         kva  Klebsiella variicola At-22
         kpe  Klebsiella variicola 342
         kpk  Klebsiella variicola KP5-1
         kvd  Klebsiella variicola DX120E
         kvq  Klebsiella variicola DSM 15968
         kox  Klebsiella michiganensis KCTC 1686
         koe  Klebsiella michiganensis E718
         koy  Klebsiella michiganensis HKOPL1
         kom  Klebsiella michiganensis M1
         kmi  Klebsiella michiganensis RC10
         kok  Klebsiella oxytoca KONIH1
         koc  Klebsiella oxytoca CAV1374
         kqu  Klebsiella quasipneumoniae
         eae  Klebsiella aerogenes KCTC 2190
         ear  Klebsiella aerogenes EA1509E
         kqv  Klebsiella quasivariicola
         kll  Klebsiella sp. LTGPAF-6F
         klw  Klebsiella huaxiensis
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       Citrobacter (15)
         cfd  Citrobacter freundii
         cwe  Citrobacter werkmanii
         cyo  Citrobacter youngae
         cpot  Citrobacter portucalensis
         cfq  Citrobacter freundii complex sp. CFNIH3
         caf  Citrobacter amalonaticus FDAARGOS_165
         cif  Citrobacter sp. FDAARGOS_156
         cfar  Citrobacter farmeri
         cir  Citrobacter sp. CFNIH10
         cie  Citrobacter sp. CRE-46
         cpar  Citrobacter pasteurii
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       Gibbsiella (1)
         gqu  Gibbsiella quercinecans
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       Blochmannia (6)
       Hamiltonella (1)
       unclassified aphid symbionts (2)
       unclassified mealybug symbionts (1)
       Riesia (2)
       Moranella (2)
       Shimwellia (1)
         ebt  Shimwellia blattae
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       Raoultella (6)
         ror  Raoultella ornithinolytica B6
         ron  Raoultella ornithinolytica S12
         rpln  Raoultella planticola
         rao  Raoultella sp. X13
         rtg  Raoultella terrigena
         ree  Raoultella electrica
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       Cedecea (4)
       Pluralibacter (3)
         pge  Pluralibacter gergoviae
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       Kosakonia (5)
       Kluyvera (2)
         kgo  Kluyvera georgiana
         kie  Kluyvera intermedia
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       Ishikawaella (1)
       Leclercia (6)
         lax  Leclercia adecarboxylata
         lei  Leclercia sp. LSNIH1
         leh  Leclercia sp. LSNIH3
         lee  Leclercia sp. W17
         ler  Leclercia sp. 1106151
         lea  Leclercia sp. J807
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       Lelliottia (4)
         lef  Lelliottia jeotgali
         lew  Lelliottia sp. WB101
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       Limnobaculum (1)
       Buttiauxella (2)
         buf  Buttiauxella sp. 3AFRM03
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       Tachikawaea (1)
       Doolittlea (1)
       Hoaglandella (1)
       Gullanella (1)
       Mikella (1)
       Purcelliella (1)
       Metakosakonia (1)
         mety  Metakosakonia sp. MRY16-398
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       Atlantibacter (1)
       Izhakiella (1)
         izh  Izhakiella sp. KSNA2
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       Yokenella (1)
       Scandinavium (1)
         sgoe  Scandinavium goeteborgense
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       unclassified Enterobacteriaceae (4)
         ebf  Enterobacteriaceae bacterium FGI 57
         ebc  Enterobacteriaceae bacterium ENNIH2
         ebu  Enterobacteriaceae bacterium S05
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       Yersinia (46)
         yca  Yersinia canariae
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       Serratia (24)
         smar  Serratia marcescens SM39
         smac  Serratia marcescens subsp. marcescens Db11
         smw  Serratia marcescens WW4
         spe  Serratia proteamaculans
         srr  Serratia plymuthica AS9
         srl  Serratia plymuthica 4Rx13
         sry  Serratia plymuthica S13
         sply  Serratia plymuthica PRI-2C
         srs  Serratia sp. AS12
         sra  Serratia sp. AS13
         smaf  Serratia sp. FGI94
         slq  Serratia liquefaciens
         serf  Serratia sp. FS14
         sfw  Serratia fonticola DSM 4576
         sfg  Serratia fonticola GS2
         srz  Serratia rubidaea
         sera  Serratia sp. ATCC 39006
         serq  Serratia sp. ATCC 39006
         serm  Serratia sp. MYb239
         squ  Serratia quinivorans
         sfj  Serratia ficaria
         sof  Serratia odorifera
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       Chania (1)
       Rahnella (4)
         raq  Rahnella aquatilis CIP 78.65 = ATCC 33071
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       Fukatsuia (1)
       Pectobacterium (13)
         eca  Pectobacterium atrosepticum SCRI1043
         patr  Pectobacterium atrosepticum JG10-08
         pato  Pectobacterium atrosepticum 21A
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       Sodalis (4)
       Dickeya (11)
         dzc  Dickeya zeae EC1
         daq  Dickeya aquatica
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       Brenneria (3)
       Lonsdalea (1)
       Erwinia (11)
         epe  Erwinia persicina
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       Buchnera (18)
       Wigglesworthia (2)
       Pantoea (17)
         pao  Pantoea sp. At-9b
         kln  Pantoea rwandensis
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       Mixta (4)
       Tatumella (2)
       Photorhabdus (4)
         plu  Photorhabdus laumondii subsp. laumondii TTO1
         plum  Photorhabdus laumondii subsp. laumondii DSPV002N
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       Proteus (8)
       Xenorhabdus (7)
         xbv  Xenorhabdus bovienii CS03
         xne  Xenorhabdus nematophila ATCC 19061
         xnm  Xenorhabdus nematophila AN6/1
         xho  Xenorhabdus hominickii
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       Providencia (9)
       Morganella (1)
       Arsenophonus (3)
       Edwardsiella (8)
       Hafnia (2)
       Obesumbacterium (1)
       Pragia (2)
       Leminorella (1)
         lri  Leminorella richardii
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       Phytobacter (2)
         kin  Phytobacter ursingii
         pdz  Phytobacter diazotrophicus
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       Plesiomonas (1)
     Gammaproteobacteria - Others (842)
       Haemophilus (22)
       Glaesserella (5)
       Histophilus (2)
       Pasteurella (7)
       Basfia (2)
       Mannheimia (15)
       Actinobacillus (11)
       Aggregatibacter (9)
       Gallibacterium (1)
       Bibersteinia (4)
       Avibacterium (2)
       Rodentibacter (2)
       Otariodibacter (1)
       Frederiksenia (1)
       Bisgaardia (1)
       unclassified Pasteurellaceae (1)
         paet  Pasteurella aerogenes
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       Xylella (9)
       Xanthomonas (38)
         xcc  Xanthomonas campestris pv. campestris ATCC 33913
         xcb  Xanthomonas campestris pv. campestris 8004
         xca  Xanthomonas campestris pv. campestris B100
         xcp  Xanthomonas campestris pv. raphani
         xcv  Xanthomonas campestris pv. vesicatoria
         xax  Xanthomonas axonopodis pv. citrumelo F1
         xac  Xanthomonas citri pv. citri 306
         xci  Xanthomonas citri subsp. citri Aw12879
         xct  Xanthomonas citri subsp. citri A306
         xcj  Xanthomonas citri subsp. citri UI6
         xcu  Xanthomonas citri pv. citri UI7
         xcn  Xanthomonas citri pv. citri NT17
         xcw  Xanthomonas citri pv. citri MN10
         xcr  Xanthomonas citri pv. citri MN11
         xcm  Xanthomonas citri pv. citri MN12
         xcf  Xanthomonas citri pv. citri mf20
         xao  Xanthomonas axonopodis Xac29-1
         xor  Xanthomonas oryzae pv. oryzicola BLS256
         xoz  Xanthomonas oryzae pv. oryzicola CFBP7342
         xal  Xanthomonas albilineans
         xsa  Xanthomonas sacchari
         xve  Xanthomonas vesicatoria
         xpe  Xanthomonas perforans
         xhr  Xanthomonas hortorum
         xga  Xanthomonas hortorum pv. gardneri
         xva  Xanthomonas vasicola
         xan  Xanthomonas sp. ISO98C4
         xar  Xanthomonas arboricola
         xcz  Xanthomonas cucurbitae
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       Stenotrophomonas (11)
         smt  Stenotrophomonas maltophilia R551-3
         stek  Stenotrophomonas sp. KCTC 12332
         slm  Stenotrophomonas sp. LM091
         stem  Stenotrophomonas sp. MYb57
         stes  Stenotrophomonas sp. ASS1
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       Pseudoxanthomonas (3)
         psd  Pseudoxanthomonas spadix
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       Lysobacter (11)
         lab  Lysobacter antibioticus 76
         laq  Lysobacter antibioticus ATCC 29479
         lcp  Lysobacter capsici
         lgu  Lysobacter gummosus
         lez  Lysobacter enzymogenes C3
         lem  Lysobacter enzymogenes M497-1
         lyj  Lysobacter sp. SJ-36
         lsol  Lysobacter soli
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       Luteimonas (3)
         lum  Luteimonas chenhongjianii
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       Thermomonas (2)
         theh  Thermomonas sp. HDW16
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       Pseudolysobacter (1)
         xbc  Pseudolysobacter antarcticus
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       Frateuria (1)
       Rhodanobacter (2)
         rgl  Rhodanobacter glycinis
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       Dyella (4)
         dji  Dyella jiangningensis
         dja  Dyella japonica
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       Dokdonella (1)
       Luteibacter (2)
         lrz  Luteibacter rhizovicinus DSM 16549
         lpy  Luteibacter pinisoli
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       Ahniella (1)
         xba  Ahniella affigens
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       Aerosticca (1)
         rbd  Aerosticca soli
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       Vibrio (53)
         vna  Vibrio natriegens
         vej  Vibrio sp. EJY3
         vfu  Vibrio furnissii
         vaf  Vibrio alfacsensis
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       Aliivibrio (4)
       Photobacterium (3)
       Grimontia (1)
       Paraphotobacterium (1)
       Salinivibrio (3)
       Pseudomonas (115)
         pae  Pseudomonas aeruginosa PAO1
         paev  Pseudomonas aeruginosa PAO1-VE13
         paei  Pseudomonas aeruginosa PAO1-VE2
         pau  Pseudomonas aeruginosa UCBPP-PA14
         pap  Pseudomonas aeruginosa PA7
         pag  Pseudomonas aeruginosa LESB58
         paf  Pseudomonas aeruginosa M18
         pnc  Pseudomonas aeruginosa NCGM2.S1
         paeb  Pseudomonas aeruginosa NCGM 1900
         pdk  Pseudomonas aeruginosa DK2
         psg  Pseudomonas aeruginosa B136-33
         prp  Pseudomonas aeruginosa RP73
         paep  Pseudomonas aeruginosa PA1
         paer  Pseudomonas aeruginosa PA1R
         paem  Pseudomonas aeruginosa MTB-1
         pael  Pseudomonas aeruginosa LES431
         paes  Pseudomonas aeruginosa SCV20265
         paeu  Pseudomonas aeruginosa PA38182
         paeg  Pseudomonas aeruginosa YL84
         paec  Pseudomonas aeruginosa c7447m
         paeo  Pseudomonas aeruginosa PAO581
         pmk  Pseudomonas mendocina NK-01
         pre  Pseudomonas resinovorans
         ppse  Pseudomonas pseudoalcaligenes
         pcq  Pseudomonas citronellolis
         ppu  Pseudomonas putida KT2440
         ppf  Pseudomonas putida F1
         ppg  Pseudomonas putida GB-1
         ppw  Pseudomonas putida W619
         ppt  Pseudomonas putida S16
         ppb  Pseudomonas putida BIRD-1
         ppi  Pseudomonas putida ND6
         ppx  Pseudomonas putida DOT-T1E
         ppuh  Pseudomonas putida HB3267
         pput  Pseudomonas putida H8234
         ppun  Pseudomonas putida NBRC 14164
         ppud  Pseudomonas putida DLL-E4
         pfv  Pseudomonas fulva
         pmon  Pseudomonas monteilii SB3078
         pmot  Pseudomonas monteilii SB3101
         pmos  Pseudomonas soli
         ppj  Pseudomonas plecoglossicida
         pst  Pseudomonas syringae pv. tomato DC3000
         psb  Pseudomonas syringae pv. syringae B728a
         psyr  Pseudomonas syringae CC1557
         psp  Pseudomonas savastanoi pv. phaseolicola 1448A
         pamg  Pseudomonas amygdali
         pavl  Pseudomonas avellanae
         pvd  Pseudomonas viridiflava
         pfl  Pseudomonas protegens Pf-5
         pprc  Pseudomonas protegens CHA0
         ppro  Pseudomonas protegens Cab57
         pfo  Pseudomonas fluorescens Pf0-1
         pfs  Pseudomonas fluorescens SBW25
         pfe  Pseudomonas fluorescens F113
         pfn  Pseudomonas fluorescens UK4
         ppz  Pseudomonas poae
         pman  Pseudomonas mandelii
         ptv  Pseudomonas trivialis
         pcg  Pseudomonas corrugata
         pvr  Pseudomonas veronii
         pazo  Pseudomonas azotoformans
         pfw  Pseudomonas simiae PCL1751
         pff  Pseudomonas simiae PICF7
         pfx  Pseudomonas lurida
         pen  Pseudomonas entomophila
         psa  Pseudomonas stutzeri A1501
         psz  Pseudomonas stutzeri ATCC 17588
         psr  Pseudomonas stutzeri DSM 4166
         psc  Pseudomonas stutzeri CCUG 29243
         psj  Pseudomonas stutzeri DSM 10701
         psh  Pseudomonas stutzeri RCH2
         pstu  Pseudomonas stutzeri 19SMN4
         pstt  Pseudomonas stutzeri 28a24
         pbm  Pseudomonas balearica
         plul  Pseudomonas luteola
         pba  Pseudomonas brassicacearum subsp. brassicacearum NFM421
         pbc  Pseudomonas brassicacearum DF41
         ppuu  Pseudomonas sp. UW4
         pdr  Pseudomonas sp. ATCC 13867
         psv  Pseudomonas sp. VLB120
         psk  Pseudomonas sp. TKP
         pkc  Pseudomonas knackmussii
         pch  Pseudomonas chlororaphis PA23
         pcz  Pseudomonas chlororaphis PCL1606
         pcp  Pseudomonas chlororaphis subsp. aurantiaca
         pfz  Pseudomonas fragi
         plq  Psychrobacter sp. FME2
         palk  Pseudomonas alkylphenolica
         prh  Pseudomonas rhizosphaerae
         pses  Pseudomonas sp. StFLB209
         psem  Pseudomonas sp. MRSN12121
         ppsy  Pseudomonas versuta
         psos  Pseudomonas sp. Os17
         pfk  Pseudomonas frederiksbergensis
         ppsl  Pseudomonas psychrotolerans
         pset  Pseudomonas sp. TCU-HL1
         psil  Pseudomonas silesiensis
         pym  Pseudomonas yamanorum
         psed  Pseudomonas sp. R2A2
         pke  Pseudomonas kribbensis
   6/37
   7/37
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  10/37
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  18/37
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  15/37
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   7/37
       Azotobacter (4)
         avn  Azotobacter vinelandii DJ
         avl  Azotobacter vinelandii CA
         avd  Azotobacter vinelandii CA6
         acx  Azotobacter chroococcum
  17/37
  17/37
  17/37
  15/37
       Oblitimonas (1)
       Permianibacter (1)
         pagr  Permianibacter aggregans
   2/37
       Psychrobacter (12)
         pcr  Psychrobacter cryohalolentis
         pso  Psychrobacter sp. G
         pur  Psychrobacter urativorans
         pali  Psychrobacter alimentarius
         pspg  Psychrobacter sp. P2G3
         psyg  Psychrobacter sp. P11G5
         psyp  Psychrobacter sp. PAMC27889
   6/37
   6/37
   3/37
   9/37
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   9/37
       Acinetobacter (47)
         acb  Acinetobacter baumannii ATCC 17978
         abm  Acinetobacter baumannii SDF
         aby  Acinetobacter baumannii AYE
         abc  Acinetobacter baumannii ACICU
         abn  Acinetobacter baumannii AB0057
         abb  Acinetobacter baumannii AB307-0294
         abx  Acinetobacter baumannii 1656-2
         abz  Acinetobacter baumannii MDR-ZJ06
         abr  Acinetobacter baumannii MDR-TJ
         abd  Acinetobacter baumannii TCDC-AB0715
         abh  Acinetobacter baumannii TYTH-1
         abad  Acinetobacter baumannii D1279779
         abj  Acinetobacter baumannii BJAB07104
         abab  Acinetobacter baumannii BJAB0715
         abaj  Acinetobacter baumannii BJAB0868
         abaz  Acinetobacter baumannii ZW85-1
         abk  Acinetobacter baumannii AbH12O-A2
         abau  Acinetobacter baumannii AB030
         abaa  Acinetobacter baumannii AB031
         abw  Acinetobacter baumannii AC29
         abal  Acinetobacter baumannii LAC-4
         acc  Acinetobacter pittii
         ano  Acinetobacter nosocomialis
         alc  Acinetobacter lactucae
         acal  Acinetobacter calcoaceticus
         acd  Acinetobacter oleivorans
         aci  Acinetobacter baylyi
         att  Acinetobacter sp. TTH0-4
         aei  Acinetobacter equi
         ajo  Acinetobacter johnsonii
         acw  Acinetobacter sp. DUT-2
         acv  Acinetobacter sp. TGL-Y2
         ajn  Acinetobacter junii
         asol  Acinetobacter soli
         asj  Acinetobacter schindleri
         aid  Acinetobacter indicus
         adv  Acinetobacter defluvii
         arj  Acinetobacter radioresistens
         awu  Acinetobacter wuhouensis
         acum  Acinetobacter cumulans
         agu  Acinetobacter guillouiae
         alw  Acinetobacter lwoffii
         ads  Acinetobacter dispersus
         aber  Acinetobacter bereziniae
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   7/37
       Moraxella (8)
         moi  Moraxella ovis
   7/37
       unclassified Moraxellaceae (1)
         mbah  Moraxellaceae bacterium HYN0046
   2/37
       Shewanella (34)
         sdn  Shewanella denitrificans
         spl  Shewanella pealeana
         shl  Shewanella halifaxensis
         swd  Shewanella woodyi
   2/37
   6/37
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   8/37
       Idiomarina (5)
       Colwellia (7)
         colw  Colwellia sp. PAMC 21821
         cber  Colwellia beringensis
   7/37
   7/37
       Litorilituus (1)
       Thalassotalea (2)
         tht  Thalassotalea sp. HSM 43
   7/37
       Pseudoalteromonas (23)
         pha  Pseudoalteromonas haloplanktis
         pat  Pseudoalteromonas atlantica
         psm  Pseudoalteromonas sp. SM9913
         prr  Pseudoalteromonas rubra
         ptn  Pseudoalteromonas translucida
         pea  Pseudoalteromonas espejiana
         png  Pseudoalteromonas nigrifaciens
         pcar  Pseudoalteromonas carrageenovora
   8/37
   4/37
   2/37
   2/37
   8/37
   2/37
   9/37
   2/37
       Marinobacter (12)
         mhc  Marinobacter hydrocarbonoclasticus ATCC 49840
         mad  Marinobacter adhaerens
         msr  Marinobacter salarius
         mpq  Marinobacter psychrophilus
         mari  Marinobacter sp. CP1
         mlq  Marinobacter sp. LQ44
         msq  Marinobacter salinus
         marj  Marinobacter sp. JH2
   7/37
  16/37
  13/37
  10/37
   9/37
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  11/37
       Alteromonas (23)
         amag  Alteromonas mediterranea MED64
         amg  Alteromonas macleodii English Channel 673
         alr  Alteromonas sp. RKMC-009
   2/37
   6/37
  11/37
       Glaciecola (2)
       Paraglaciecola (2)
       Lacimicrobium (1)
         lal  Lacimicrobium alkaliphilum
   8/37
       Catenovulum (1)
         cate  Catenovulum sp. CCB-QB4
   2/37
       Saliniradius (1)
         salh  Saliniradius amylolyticus
   8/37
       Salinimonas (2)
       Hydrocarboniclastica (1)
         hmi  Hydrocarboniclastica marina
   2/37
       Psychromonas (2)
       Ferrimonas (2)
       Moritella (3)
       Cellvibrio (5)
         cja  Cellvibrio japonicus
         ceg  Cellvibrio sp. KY-GH-1
   3/37
   2/37
       Saccharophagus (1)
       Teredinibacter (1)
         ttu  Teredinibacter turnerae
   5/37
       Simiduia (1)
       Spongiibacter (1)
         spoi  Spongiibacter sp. IMCC21906
  17/37
       Zhongshania (1)
         zal  Zhongshania aliphaticivorans
  14/37
       Oceanicoccus (1)
       Microbulbifer (6)
         mict  Microbulbifer sp. THAF38
   4/37
       Halioglobus (2)
         hja  Halioglobus japonicus
         halc  Halioglobus maricola
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   6/37
       Kineobactrum (1)
         kim  Kineobactrum sp. M2
  10/37
       Coxiella (8)
       Rickettsiella (1)
       Aquicella (2)
       Legionella (23)
       Tatlockia (1)
       Methylococcus (2)
       Methylomonas (5)
       Methylomicrobium (2)
       Methylovulum (1)
       Methylocaldum (1)
         mmai  Methylocaldum marinum
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       Methylospira (1)
       Francisella (43)
       Allofrancisella (2)
       Hydrogenovibrio (3)
       Thiomicrospira (3)
       Methylophaga (2)
       Cycloclasticus (3)
         cyq  Cycloclasticus sp. P1
         cza  Cycloclasticus zancles
         cyy  Cycloclasticus sp. PY97N
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  22/37
       Piscirickettsia (1)
       Thiomicrorhabdus (1)
       Thioploca (1)
       Beggiatoa (1)
         blep  Beggiatoa leptomitiformis
  11/37
       Nitrosococcus (4)
       Allochromatium (1)
       Thiocystis (1)
       Thioflavicoccus (1)
         tmb  Thioflavicoccus mobilis
   4/37
       Marichromatium (1)
         mpur  Marichromatium purpuratum
   2/37
       Tenderia (1)
       Nitrosoglobus (1)
       Thiodictyon (1)
       Rheinheimera (1)
       Thermochromatium (1)
       Alkalilimnicola (1)
         aeh  Alkalilimnicola ehrlichii
   7/37
       Halorhodospira (2)
       Ectothiorhodospira (2)
       Thioalkalivibrio (5)
       Spiribacter (4)
       Acidihalobacter (1)
       Halothiobacillus (2)
       Wenzhouxiangella (1)
         wma  Wenzhouxiangella marina
   2/37
       Woeseia (1)
       Granulosicoccus (1)
         gai  Granulosicoccus antarcticus
   3/37
       Guyparkeria (1)
       Thiohalobacter (1)
       Hahella (2)
         hch  Hahella chejuensis
         hahe  Hahella sp. KA22
   2/37
   2/37
       Chromohalobacter (1)
         csa  Chromohalobacter salexigens
   3/37
       Halomonas (18)
         hcs  Halomonas campaniensis
         hak  Halomonas sp. KO116
         ham  Halomonas sp. R57-5
         hhu  Halomonas huangheensis
         hsi  Halomonas aestuarii
         halo  Halomonas sp. 1513
         hhh  Halomonas hydrothermalis
         hbe  Halomonas beimenensis
         halk  Halomonas alkaliphila
         hvn  Halomonas venusta
         hol  Halomonas olivaria
         hsr  Halomonas sulfidaeris
         hmd  Halomonas meridiana
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   2/37
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   3/37
   4/37
       Portiera (9)
       Carsonella (7)
       Evansia (1)
       Zymobacter (1)
       Halotalea (1)
         haa  Halotalea alkalilenta
   3/37
       Cobetia (1)
       Kushneria (3)
       Pistricoccus (1)
       Alcanivorax (5)
         apac  Alcanivorax pacificus
         axe  Alcanivorax xenomutans
  16/37
   2/37
       Ketobacter (1)
         kak  Ketobacter alkanivorans
   7/37
       Kangiella (4)
         kko  Kangiella koreensis
         kge  Kangiella geojedonensis
         ksd  Kangiella sediminilitoris
         kpd  Kangiella profundi
   2/37
   2/37
   2/37
   2/37
       Marinomonas (3)
         mmw  Marinomonas sp. MWYL1
         mme  Marinomonas mediterranea
         mpc  Marinomonas posidonica
   7/37
  12/37
   6/37
       Thalassolituus (2)
       Oleispira (1)
       Marinobacterium (1)
         mars  Marinobacterium aestuarii
   8/37
       Bacterioplanes (1)
       Neptunomonas (1)
         ncu  Neptunomonas concharum
  11/37
       Nitrincola (1)
         nik  Nitrincola sp. KXZD1103
  12/37
       Bermanella (1)
       Gynuella (1)
         gsn  Gynuella sunshinyii
   4/37
       Reinekea (1)
       Oleiphilus (1)
       Litoricola (1)
       Aeromonas (22)
       Tolumonas (1)
       Oceanimonas (1)
         oce  Oceanimonas sp. GK1
   8/37
       Oceanisphaera (2)
       Zobellella (1)
         zdf  Zobellella denitrificans
  17/37
       Dichelobacter (1)
       Cardiobacterium (1)
       Gilliamella (1)
       Frischella (1)
       Orbus (1)
       Steroidobacter (1)
       Solimonas (1)
         sok  Solimonas sp. K1W22B-7
   9/37
       Sinimarinibacterium (1)
         sini  Sinimarinibacterium sp. NLF-5-8
  11/37
       Immundisolibacter (1)
         gbi  Immundisolibacter cernigliae
  24/37
       Sulfuricaulis (1)
         slim  Sulfuricaulis limicola
   2/37
       Sulfurifustis (1)
         sva  Sulfurifustis variabilis
   3/37
       Acidiferrobacter (1)
       Salinisphaera (1)
         saln  Salinisphaera sp. LB1
   5/37
       Thiolapillus (1)
         tbn  Thiolapillus brandeum
  12/37
       Sedimenticola (1)
       Thioglobus (3)
       Pseudohongiella (1)
       Nardonella (1)
       Reidiella (1)
       Ruthia (1)
       Vesicomyosocius (1)
       unclassified Gammaproteobacteria (6)
         gpb  Gamma proteobacterium HdN1
   6/37
     Betaproteobacteria (446)
       Neisseria (30)
         nzl  Neisseria zalophi
   3/37
       Snodgrassella (1)
       Kingella (1)
       Vitreoscilla (2)
         vff  Vitreoscilla filiformis
  12/37
       Eikenella (2)
       Simonsiella (1)
       unclassified Neisseriaceae (1)
       Chromobacterium (7)
         chro  Chromobacterium sp. ATCC 53434
         crz  Chromobacterium rhizoryzae
   9/37
   5/37
       Iodobacter (1)
       Laribacter (1)
       Pseudogulbenkiania (1)
         pse  Pseudogulbenkiania sp. NH8B
   8/37
       Jeongeupia (1)
       Aquaspirillum (1)
         aql  Aquaspirillum sp. LM1
  12/37
       Aquitalea (2)
         aqs  Aquitalea sp. USM4
   5/37
       Deefgea (1)
       Ralstonia (13)
         rso  Ralstonia solanacearum GMI1000
         rsc  Ralstonia solanacearum CFBP2957
         rsl  Ralstonia solanacearum PSI07
         rsn  Ralstonia solanacearum Po82
         rsm  Ralstonia solanacearum CMR15
         rse  Ralstonia solanacearum FQY_4
         rsy  Ralstonia solanacearum UY031
         rpi  Ralstonia pickettii 12J
         rpf  Ralstonia pickettii 12D
         rpj  Ralstonia pickettii DTP0602
         rmn  Ralstonia mannitolilytica
         rin  Ralstonia insidiosa
         rpu  Ralstonia pseudosolanacearum
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       Cupriavidus (13)
         reh  Cupriavidus necator H16
         cnc  Cupriavidus necator N-1
         cuh  Cupriavidus necator NH9
         reu  Cupriavidus pinatubonensis JMP134
         rme  Cupriavidus metallidurans
         cti  Cupriavidus taiwanensis
         cbw  Cupriavidus basilensis
         ccup  Cupriavidus sp. USMAHM13
         cup  Cupriavidus malaysiensis
         cuu  Cupriavidus sp. USMAA2-4
         cpau  Cupriavidus pauculus
         cox  Cupriavidus oxalaticus
  20/37
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  21/37
   8/37
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       Burkholderia (89)
         bma  Burkholderia mallei ATCC 23344
         bmv  Burkholderia mallei SAVP1
         bml  Burkholderia mallei NCTC 10229
         bmn  Burkholderia mallei NCTC 10247
         bmal  Burkholderia mallei 23344
         bmae  Burkholderia mallei 6
         bmaq  Burkholderia mallei BMQ
         bmai  Burkholderia mallei 2000031063
         bmaf  Burkholderia mallei FMH 23344
         bmaz  Burkholderia mallei NCTC 10247
         bmab  Burkholderia mallei 2002734299
         bps  Burkholderia pseudomallei K96243
         bpm  Burkholderia pseudomallei 1710b
         bpl  Burkholderia pseudomallei 1106a
         bpd  Burkholderia pseudomallei 668
         bpr  Burkholderia pseudomallei MSHR346
         bpse  Burkholderia pseudomallei MSHR305
         bpsm  Burkholderia pseudomallei MSHR511
         bpsu  Burkholderia pseudomallei MSHR146
         bpsd  Burkholderia pseudomallei MSHR520
         bpz  Burkholderia pseudomallei 1026b
         bpq  Burkholderia pseudomallei BPC006
         bpk  Burkholderia pseudomallei NCTC 13179
         bpsh  Burkholderia pseudomallei HBPUB10134a
         bpsa  Burkholderia pseudomallei NAU35A-3
         bpso  Burkholderia pseudomallei A79A
         but  Burkholderia pseudomallei TSV202
         bte  Burkholderia thailandensis E264
         btq  Burkholderia thailandensis 2002721723
         btj  Burkholderia thailandensis E444
         btz  Burkholderia thailandensis H0587
         btd  Burkholderia thailandensis MSMB121
         btv  Burkholderia thailandensis MSMB59
         bthe  Burkholderia thailandensis E254
         bthm  Burkholderia thailandensis USAMRU Malaysia #20
         btha  Burkholderia thailandensis 2003015869
         bthl  Burkholderia thailandensis 2002721643
         bok  Burkholderia oklahomensis E0147
         boc  Burkholderia oklahomensis C6786
         buu  Burkholderia sp. BDU6
         bvi  Burkholderia vietnamiensis G4
         bve  Burkholderia vietnamiensis LMG 10929
         bur  Burkholderia lata
         bcn  Burkholderia cenocepacia AU 1054
         bch  Burkholderia cenocepacia HI2424
         bcm  Burkholderia cenocepacia MC0-3
         bcj  Burkholderia cenocepacia J2315
         bcen  Burkholderia cenocepacia DDS 22E-1
         bcew  Burkholderia cenocepacia DWS 37E-2
         bceo  Burkholderia cenocepacia H111
         bam  Burkholderia ambifaria AMMD
         bac  Burkholderia ambifaria MC40-6
         bmj  Burkholderia multivorans ATCC 17616 (Tohoku)
         bmu  Burkholderia multivorans ATCC 17616 (JGI)
         bmk  Burkholderia multivorans DDS 15A-1
         bmul  Burkholderia multivorans ATCC BAA-247
         bct  Burkholderia cepacia GG4
         bced  Burkholderia cepacia DDS 7H-2
         bcep  Burkholderia cepacia ATCC 25416
         bdl  Burkholderia dolosa
         bpyr  Burkholderia pyrrocinia
         bcon  Burkholderia contaminans
         bub  Burkholderia ubonensis
         bdf  Burkholderia diffusa
         blat  Burkholderia latens
         btei  Burkholderia territorii
         bsem  Burkholderia seminalis
         bpsl  Burkholderia pseudomultivorans
         bmec  Burkholderia metallica
         bstg  Burkholderia stagnalis
         bstl  Burkholderia stabilis
         bgl  Burkholderia glumae BGR1
         bgu  Burkholderia glumae LMG 2196 = ATCC 33617
         bug  Burkholderia sp. CCGE1001
         bgf  Burkholderia sp. CCGE1003
         bgd  Burkholderia gladioli BSR3
         bgo  Burkholderia gladioli ATCC 10248
         byi  Burkholderia sp. YI23
         buk  Burkholderia sp. KJ006
         buo  Burkholderia insecticola
         bue  Burkholderia sp. RPE67
         bul  Burkholderia sp. 2002721687
         buq  Burkholderia sp. HB1
         bgp  Burkholderia plantarii PG1
         bpla  Burkholderia plantarii ATCC 43733
         bud  Burkholderia sp. Bp5365
         buz  Burkholderia sp. OLGA172
         bum  Burkholderia sp. PAMC 26561
         bui  Burkholderia sp. PAMC 28687
  10/37
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   9/37
   9/37
  17/37
   5/37
   6/37
  10/37
  11/37
  12/37
   8/37
  13/37
  13/37
  18/37
   4/37
   4/37
  13/37
  17/37
   8/37
   8/37
       Paraburkholderia (18)
         bxe  Paraburkholderia xenovorans LB400
         bxb  Paraburkholderia xenovorans LB400
         bph  Paraburkholderia phymatum
         bge  Paraburkholderia sp. CCGE1002
         bpx  Paraburkholderia phenoliruptrix
         bpy  Paraburkholderia phytofirmans
         bfn  Paraburkholderia fungorum
         bcai  Paraburkholderia caribensis
         pspw  Paraburkholderia sprentiae
         para  Paraburkholderia sp. SOS3
         parb  Paraburkholderia aromaticivorans
         phs  Paraburkholderia hospita
         pter  Paraburkholderia terrae
         pgp  Paraburkholderia graminis
         pcj  Paraburkholderia caledonica
         pts  Paraburkholderia terricola
         pcaf  Paraburkholderia caffeinilytica
         pmeg  Paraburkholderia megapolitana
  26/37
  24/37
  13/37
  11/37
  17/37
  12/37
  12/37
  10/37
  11/37
   2/37
  18/37
  16/37
  14/37
   4/37
   8/37
  10/37
  19/37
  12/37
       Mycetohabitans (1)
         brh  Paraburkholderia rhizoxinica
   8/37
       Polynucleobacter (4)
       Pandoraea (14)
         ppk  Pandoraea pnomenusa 3kgm
         ppno  Pandoraea pnomenusa RB38
         ppnm  Pandoraea pnomenusa DSM 16536
         prb  Pandoraea pnomenusa
         ppul  Pandoraea pulmonicola
         pspu  Pandoraea sputorum
         papi  Pandoraea apista
         pve  Pandoraea vervacti
         pox  Pandoraea oxalativorans
         ptx  Pandoraea thiooxydans
         pfg  Pandoraea faecigallinarum
         pnr  Pandoraea norimbergensis
         pand  Pandoraea sp. XY-2
         pfib  Pandoraea fibrosis
  17/37
  11/37
  11/37
  17/37
  11/37
  11/37
  11/37
  14/37
  11/37
   7/37
  11/37
  11/37
  12/37
  12/37
       Paucimonas (1)
         plg  Paucimonas lemoignei
   3/37
       Ephemeroptericola (1)
       Lautropia (1)
       Mycoavidus (1)
       Caballeronia (1)
         caba  Caballeronia sp. SBC2
  17/37
       Limnobacter (1)
         limn  Limnobacter sp. SAORIC-580
  12/37
       Bordetella (24)
         bpar  Bordetella parapertussis Bpp5
         bpa  Bordetella parapertussis 12822
         bbh  Bordetella bronchiseptica 253
         bbr  Bordetella bronchiseptica RB50
         bbm  Bordetella bronchiseptica MO149
         bbx  Bordetella bronchiseptica S798
         bpt  Bordetella petrii
         bav  Bordetella avium
         bho  Bordetella holmesii ATCC 51541
         bhm  Bordetella holmesii 44057
         bhz  Bordetella hinzii
         btrm  Bordetella trematum
         bpdz  Bordetella pseudohinzii
         boh  Bordetella sp. H567
         boz  Bordetella sp. HZ20
         boj  Bordetella sp. J329
   7/37
   2/37
   8/37
   8/37
   8/37
   8/37
  14/37
   4/37
   5/37
   5/37
   6/37
   6/37
   4/37
   4/37
   2/37
  18/37
       Achromobacter (9)
         axy  Achromobacter xylosoxidans A8
         axo  Achromobacter xylosoxidans NH44784-1996
         axn  Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
         axx  Achromobacter xylosoxidans NCTC10807
         adt  Achromobacter denitrificans
         ais  Achromobacter insolitus
         asw  Achromobacter spanius
         achr  Achromobacter sp. AONIH1
         achb  Achromobacter sp. B7
  14/37
   5/37
   5/37
   5/37
   5/37
  13/37
   9/37
  19/37
  12/37
       Taylorella (5)
       Pusillimonas (3)
         put  Pusillimonas sp. T7-7
         pus  Pusillimonas sp. ye3
         pud  Pusillimonas sp. DMV24BSW_D
   5/37
   2/37
  16/37
       Advenella (2)
       Castellaniella (1)
         cdn  Castellaniella defragrans
  14/37
       Basilea (1)
       Alcaligenes (3)
         afa  Alcaligenes faecalis ZD02
         afq  Alcaligenes faecalis JQ135
         aaqu  Alcaligenes aquatilis
  12/37
  12/37
  12/37
       Paenalcaligenes (1)
         phn  Paenalcaligenes hominis
   4/37
       Orrella (1)
       Oligella (1)
         our  Oligella urethralis
   6/37
       Pigmentiphaga (2)
         pig  Pigmentiphaga sp. H8
  18/37
       Kerstersia (1)
         kgy  Kerstersia gyiorum
  18/37
       Rhodoferax (6)
         rfr  Rhodoferax ferrireducens
         rsb  Rhodoferax saidenbachensis
         rhy  Rhodoferax koreense
   5/37
   4/37
   5/37
       Polaromonas (5)
         pol  Polaromonas sp. JS666
         pna  Polaromonas naphthalenivorans
         pos  Polaromonas sp. SP1
         poo  Polaromonas sp. Pch-P
   9/37
  18/37
   4/37
   4/37
       Acidovorax (11)
         aav  Acidovorax citrulli
         ajs  Acidovorax sp. JS42
         dia  Acidovorax ebreus
         aaa  Acidovorax avenae
         ack  Acidovorax sp. KKS102
         acra  Acidovorax sp. RAC01
         acid  Acidovorax carolinensis NA2
         acip  Acidovorax carolinensis P4
         acin  Acidovorax carolinensis NA3
         acis  Acidovorax carolinensis P3
         acio  Acidovorax sp. 1608163
   2/37
  15/37
   2/37
   6/37
   7/37
  10/37
  15/37
  15/37
  15/37
  15/37
   5/37
       Verminephrobacter (1)
         vei  Verminephrobacter eiseniae
  15/37
       Delftia (4)
         dac  Delftia acidovorans
         del  Delftia sp. Cs1-4
         dts  Delftia tsuruhatensis
         dhk  Delftia sp. HK171
   5/37
   5/37
   5/37
   5/37
       Variovorax (6)
         vap  Variovorax paradoxus S110
         vpe  Variovorax paradoxus EPS
         vpd  Variovorax paradoxus B4
         vbo  Variovorax boronicumulans
         vam  Variovorax sp. PMC12
   5/37
   5/37
  14/37
  17/37
   6/37
       Comamonas (5)
         ctt  Comamonas thiooxydans
         ctes  Comamonas testosteroni TK102
         cke  Comamonas kerstersii
         cser  Comamonas serinivorans
         cof  Comamonas sp. NLF 7-7
  15/37
  10/37
   4/37
  12/37
  12/37
       Alicycliphilus (2)
         adn  Alicycliphilus denitrificans BC
         adk  Alicycliphilus denitrificans K601
  15/37
  12/37
       Ramlibacter (1)
         rta  Ramlibacter tataouinensis
   2/37
       Symbiobacter (1)
       Ottowia (2)
       Limnohabitans (2)
         lih  Limnohabitans sp. 63ED37-2
   3/37
       Hydrogenophaga (6)
         hyr  Hydrogenophaga sp. RAC07
         hyb  Hydrogenophaga sp. PBC
         hyl  Hydrogenophaga sp. LPB0072
         hpse  Hydrogenophaga pseudoflava
         hyn  Hydrogenophaga sp. BPS33
   4/37
   5/37
  12/37
  17/37
  18/37
       Diaphorobacter (2)
         dpy  Diaphorobacter polyhydroxybutyrativorans
         dih  Diaphorobacter sp. HDW4A
   5/37
  21/37
       Simplicispira (1)
         simp  Simplicispira suum
  15/37
       Melaminivora (2)
         melm  Pulveribacter suum
         mela  Melaminivora sp. SC2-9
   2/37
  11/37
       Serpentinomonas (2)
         cbaa  Serpentinomonas raichei
         cbab  Serpentinomonas mccroryi
   3/37
   3/37
       Methylibium (2)
         mpt  Methylibium petroleiphilum
         metp  Methylibium sp. Pch-M
  12/37
  12/37
       Herminiimonas (1)
         har  Herminiimonas arsenicoxydans
   2/37
       Janthinobacterium (8)
         mms  Janthinobacterium sp. Marseille
         jag  Janthinobacterium agaricidamnosum
         jaj  Janthinobacterium sp. 17J80-10
         jas  Janthinobacterium sp. SNU WT3
   2/37
   9/37
  10/37
   6/37
       Herbaspirillum (6)
         hse  Herbaspirillum seropedicae SmR1
         hsz  Herbaspirillum seropedicae Z67
         hht  Herbaspirillum hiltneri
         hrb  Herbaspirillum rubrisubalbicans
         hee  Herbaspirillum sp. meg3
         hhf  Herbaspirillum huttiense
  10/37
  10/37
   2/37
  10/37
   9/37
  10/37
       Zinderia (1)
       Collimonas (3)
         cfu  Collimonas fungivorans
         care  Collimonas arenae
         cpra  Collimonas pratensis
   2/37
   2/37
   2/37
       Massilia (10)
         mnr  Massilia sp. NR 4-1
         masw  Massilia sp. WG5
         mali  Massilia albidiflava
         mum  Massilia umbonata
   3/37
  16/37
   7/37
   7/37
       Oxalobacter (1)
       Undibacterium (2)
       Noviherbaspirillum (1)
       Duganella (1)
       Sutterella (2)
       Leptothrix (1)
         lch  Leptothrix cholodnii
  12/37
       Thiomonas (2)
       Rubrivivax (2)
       Roseateles (1)
         rdp  Roseateles depolymerans
   2/37
       Paucibacter (1)
         pkt  Paucibacter sp. KCTC 42545
   2/37
       Mitsuaria (1)
         miu  Mitsuaria sp. 7
   2/37
       Rhizobacter (1)
         rgu  Rhizobacter gummiphilus
  10/37
       Aquabacterium (1)
         aon  Aquabacterium olei
   7/37
       Sphaerotilus (1)
         snn  Sphaerotilus natans
  11/37
       Xylophilus (1)
         xyk  Xylophilus sp. KACC 21265
   2/37
       unclassified Burkholderiales (3)
         pbh  Polyangium brachysporum
   2/37
       Nitrosomonas (7)
         neu  Nitrosomonas europaea
         net  Nitrosomonas eutropha
         nit  Nitrosomonas sp. AL212
         nco  Nitrosomonas communis
         nur  Nitrosomonas ureae
   4/37
   4/37
   4/37
   4/37
   4/37
       Nitrosospira (2)
         nmu  Nitrosospira multiformis
         nlc  Nitrosospira lacus
   4/37
   4/37
       Sulfuritalea (1)
       Methyloversatilis (1)
       Thiobacillus (1)
       Methylobacillus (1)
       Methylotenera (2)
       Methylovorus (2)
       Methylopumilus (2)
       Methylophilus (1)
       Sideroxydans (1)
       Gallionella (1)
       Sulfuricella (1)
       Sulfuriferula (3)
       Ferriphaselus (1)
         fam  Ferriphaselus amnicola
   3/37
       Nitrotoga (1)
       Aromatoleum (1)
         eba  Aromatoleum aromaticum
   6/37
       Azospira (1)
       Rugosibacter (1)
         rbu  Rugosibacter aromaticivorans
  18/37
       Oryzomicrobium (1)
         otr  Oryzomicrobium terrae
   2/37
       unclassified Rhodocyclaceae (1)
       Dechloromonas (2)
         dar  Dechloromonas aromatica
         dey  Dechloromonas sp. HYN0024
  18/37
  12/37
       Azoarcus (9)
         azo  Azoarcus sp. BH72
         azi  Azoarcus sp. CIB
         aoa  Azoarcus olearius
         atw  Azoarcus sp. SY39
         acom  Azoarcus communis
         azd  Azoarcus sp. DN11
         azr  Azoarcus sp. DD4
         azq  Azoarcus sp. M9-3-2
  18/37
   8/37
  18/37
   2/37
   9/37
  12/37
  18/37
  12/37
       Thauera (5)
         tmz  Thauera sp. MZ1T
         thu  Thauera humireducens
         tcl  Thauera chlorobenzoica
         thk  Thauera sp. K11
         tak  Thauera aromatica
  21/37
  13/37
   3/37
  18/37
   3/37
       unclassified Zoogloeaceae (1)
       Ferrovum (1)
       Accumulibacter (1)
       Tremblaya (3)
       Kinetoplastibacterium (8)
       Profftella (1)
       Nasuia (1)
       Vidania (1)
       unclassified Betaproteobacteria (3)
     Epsilonproteobacteria (187)
       Helicobacter (76)
       Wolinella (1)
       Sulfurimonas (5)
       Sulfuricurvum (2)
       Campylobacter (67)
         cjd  Campylobacter jejuni subsp. doylei 269.97
         clq  Campylobacter lari CCUG 22395
         ccf  Campylobacter coli RM1875
   2/37
   2/37
   2/37
       Arcobacter (13)
         abu  Arcobacter butzleri RM4018
         abt  Arcobacter butzleri ED-1
         abl  Arcobacter butzleri 7h1h
         ant  Arcobacter nitrofigilis
         ask  Arcobacter skirrowii
         ahs  Arcobacter halophilus
         amar  Arcobacter marinus
         atp  Arcobacter trophiarum
         aell  Arcobacter ellisii
         aaqi  Arcobacter aquimarinus
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
  12/37
       Aliiarcobacter (2)
         apoc  Arcobacter porcinus
   2/37
       Halarcobacter (2)
         hbv  Halarcobacter bivalviorum
         hebr  Halarcobacter ebronensis
   2/37
   2/37
       Pseudoarcobacter (1)
         paco  Pseudoarcobacter acticola
   2/37
       unclassified Arcobacter (2)
         arc  Arcobacter sp. L
         alp  Arcobacter sp. LPB0137
  12/37
   2/37
       Sulfurospirillum (7)
         shal  Sulfurospirillum halorespirans
   3/37
       Hydrogenimonas (1)
       Nitratifractor (1)
       Nitratiruptor (1)
       Sulfurovum (2)
       Nautilia (2)
       Caminibacter (1)
       Cetia (1)
     Deltaproteobacteria (90)
       Geobacter (11)
       Geoalkalibacter (1)
       Pelobacter (4)
         pef  Pelobacter sp. SFB93
   2/37
       Desulfuromonas (2)
         des  Desulfuromonas soudanensis
   3/37
       Desulfovibrio (18)
         dma  Desulfovibrio magneticus
   2/37
       Pseudodesulfovibrio (5)
         dpi  Pseudodesulfovibrio piezophilus
   2/37
       Lawsonia (2)
       Desulfomicrobium (2)
       Desulfohalobium (1)
       Desulfotalea (1)
       Desulfurivibrio (1)
       Desulfobulbus (2)
       Desulfocapsa (1)
       Desulfococcus (2)
         dml  Desulfococcus multivorans
   4/37
       Desulfatibacillum (1)
       Desulfobacterium (1)
       Desulfobacula (1)
       Desulfosarcina (3)
         dwd  Desulfosarcina widdelii
   4/37
       Anaeromyxobacter (4)
       Myxococcus (3)
         mxa  Myxococcus xanthus
         msd  Myxococcus stipitatus
         mym  Myxococcus hansupus
   2/37
   3/37
   5/37
       Corallococcus (3)
         ccx  Corallococcus coralloides
         mfu  Corallococcus macrosporus
         mmas  Myxococcus macrosporus
   6/37
   2/37
   2/37
       Stigmatella (1)
         sur  Stigmatella aurantiaca
   2/37
       Archangium (1)
         age  Archangium gephyra
   2/37
       Melittangium (1)
         mbd  Melittangium boletus
   4/37
       Cystobacter (1)
       Vulgatibacter (1)
       Sorangium (2)
       Chondromyces (1)
       Sandaracinus (1)
       Labilithrix (1)
       Minicystis (1)
         mrm  Minicystis rosea
   3/37
       Haliangium (1)
         hoh  Haliangium ochraceum
   7/37
       Syntrophus (1)
       Desulfobacca (1)
       Desulfomonile (1)
         dti  Desulfomonile tiedjei
   5/37
       Syntrophobacter (1)
         sfu  Syntrophobacter fumaroxidans
   4/37
       Desulfoglaeba (1)
       Desulfarculus (1)
       Hippea (1)
       Desulfurella (1)
       Bradymonas (1)
     Alphaproteobacteria (705)
       Rickettsia (48)
       Orientia (2)
       Phycorickettsia (1)
       Wolbachia (10)
       Anaplasma (10)
       Ehrlichia (14)
       Neorickettsia (4)
       Midichloria (1)
       Fokinia (1)
       unclassified Rickettsiales (2)
       Paracaedibacter (1)
       Paracaedimonas (1)
       Nucleicultrix (1)
       unclassified Holosporaceae (1)
       Mesorhizobium (11)
         mlo  Mesorhizobium japonicum MAFF 303099
         mln  Mesorhizobium loti NZP2037
         mci  Mesorhizobium ciceri (biovar Biserrulae)
         mop  Mesorhizobium opportunistum
         mam  Mesorhizobium australicum
         mamo  Mesorhizobium amorphae
         meso  Mesorhizobium sp. B7
         mesw  Mesorhizobium sp. WSM1497
         mesm  Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2
         mesp  Mesorhizobium sp. Pch-S
         mhua  Mesorhizobium huakuii
   3/37
   3/37
   4/37
   4/37
   4/37
   3/37
   5/37
   4/37
   3/37
   6/37
   9/37
       Chelativorans (1)
         mes  Chelativorans sp. BNC1
   4/37
       Hoeflea (1)
       Aminobacter (2)
         aak  Aminobacter aminovorans
         amih  Aminobacter sp. MSH1
   6/37
  13/37
       Phyllobacterium (1)
         pht  Phyllobacterium zundukense
   9/37
       Roseitalea (1)
         rpod  Roseitalea porphyridii
   2/37
       Nitratireductor (1)
         niy  Nitratireductor sp. SY7
   3/37
       Oricola (1)
         orm  Oricola sp. MEBiC13590
   2/37
       Parvibaculum (1)
         pla  Parvibaculum lavamentivorans
   8/37
       Pyruvatibacter (1)
       unclassified Rhodobiaceae (1)
       Sinorhizobium (15)
         sme  Sinorhizobium meliloti 1021
         smk  Sinorhizobium meliloti AK83
         smq  Sinorhizobium meliloti BL225C
         smx  Sinorhizobium meliloti SM11
         smi  Sinorhizobium meliloti Rm41
         smeg  Sinorhizobium meliloti GR4
         smel  Sinorhizobium meliloti 2011
         smer  Sinorhizobium meliloti RMO17
         smd  Sinorhizobium medicae
         rhi  Sinorhizobium fredii NGR234
         sfh  Sinorhizobium fredii HH103
         sfd  Sinorhizobium fredii USDA 257
         six  Sinorhizobium sp. RAC02
         same  Sinorhizobium americanum
         sino  Sinorhizobium sp. CCBAU 05631
   3/37
   3/37
   3/37
   3/37
   6/37
   3/37
   3/37
   6/37
   3/37
   5/37
  10/37
  10/37
   3/37
   4/37
   9/37
       Ensifer (4)
         ead  Ensifer adhaerens OV14
         eah  Ensifer adhaerens Casida A
         esj  Ensifer sojae
         eak  Ensifer alkalisoli
   9/37
   9/37
   8/37
  15/37
       Agrobacterium (10)
         atu  Agrobacterium fabrum
         ara  Agrobacterium radiobacter
         atf  Agrobacterium tumefaciens Ach5
         ata  Agrobacterium tumefaciens S33
         avi  Agrobacterium vitis
         agr  Agrobacterium sp. H13-3
         agc  Agrobacterium sp. RAC06
         aro  Agrobacterium rhizogenes
         agt  Agrobacterium sp. 33MFTa1.1
         alf  Agrobacterium larrymoorei
   6/37
  16/37
   2/37
   4/37
   2/37
   3/37
   6/37
   3/37
   7/37
   2/37
       Rhizobium (26)
         ret  Rhizobium etli CFN 42
         rec  Rhizobium etli CIAT 652
         rel  Rhizobium etli bv. mimosae Mim1
         rep  Rhizobium etli bv. phaseoli IE4803
         rei  Rhizobium sp. IE4771
         rle  Rhizobium leguminosarum bv. viciae 3841
         rlt  Rhizobium leguminosarum bv. trifolii WSM2304
         rlg  Rhizobium leguminosarum bv. trifolii WSM1325
         rlb  Rhizobium leguminosarum bv. trifolii WSM1689
         rlu  Rhizobium leguminosarum bv. trifolii CB782
         rtr  Rhizobium tropici
         rir  Rhizobium sp. IRBG74
         rhl  Rhizobium favelukesii
         rga  Rhizobium gallicum
         rhn  Rhizobium sp. N1341
         rpha  Rhizobium phaseoli
         rht  Rhizobium sp. NT-26
         rhx  Rhizobium sp. N731
         rhv  Rhizobium sp. S41
         rhk  Rhizobium sp. Kim5
         rez  Rhizobium esperanzae
         rjg  Rhizobium jaguaris
         rhr  Rhizobium sp. 11515TR
         rgr  Rhizobium grahamii
         rad  Rhizobium acidisoli
         rpus  Rhizobium pusense
   6/37
   6/37
   3/37
   5/37
   5/37
   7/37
   6/37
   6/37
   6/37
   5/37
   6/37
   6/37
   6/37
   6/37
   5/37
   5/37
   3/37
   5/37
   3/37
  11/37
   5/37
   4/37
   4/37
   3/37
   6/37
   4/37
       Neorhizobium (4)
         ngl  Neorhizobium galegae bv. officinalis bv. officinalis HAMBI 1141
         ngg  Neorhizobium galegae bv. orientalis HAMBI 540
         neo  Neorhizobium sp. SOG26
         nen  Neorhizobium sp. NCHU2750
   7/37
   4/37
   3/37
   4/37
       Liberibacter (7)
       Shinella (1)
         shz  Shinella sp. HZN7
   7/37
       Georhizobium (1)
         abaw  Georhizobium profundi
   8/37
       Brucella (44)
         bme  Brucella melitensis bv. 1 16M
         bmel  Brucella melitensis bv. 1 16M
         bmi  Brucella melitensis ATCC 23457
         bmz  Brucella melitensis M28
         bmg  Brucella melitensis M5-90
         bmw  Brucella melitensis NI
         bmee  Brucella melitensis bv. 3 Ether
         bmf  Brucella abortus 2308
         bmb  Brucella abortus bv. 1 9-941
         bmc  Brucella abortus S19
         baa  Brucella abortus A13334
         babo  Brucella abortus bv. 2 86/8/59
         babr  Brucella abortus bv. 6 870
         babt  Brucella abortus 63 75
         babb  Brucella abortus BDW
         babu  Brucella abortus bv. 9 C68
         babs  Brucella abortus BER
         babc  Brucella abortus NCTC 10505
         bms  Brucella suis 1330
         bsi  Brucella suis 1330
         bsf  Brucella suis bv. 1
         bsui  Brucella suis bv. 2 Bs143CITA
         bsup  Brucella suis bv. 2 PT09143
         bsuv  Brucella suis bv. 2 PT09172
         bsuc  Brucella suis bv. 2 Bs364CITA
         bmt  Brucella suis ATCC 23445
         bsz  Brucella suis bv. 3
         bsv  Brucella suis VBI22
         bsw  Brucella suis ZW043
         bsg  Brucella suis ZW046
         bov  Brucella ovis
         bcs  Brucella canis ATCC 23365
         bsk  Brucella canis HSK A52141
         bol  Brucella canis Oliveri
         bcar  Brucella canis RM6/66
         bcas  Brucella canis SVA13
         bmr  Brucella microti
         bpp  Brucella pinnipedialis B2/94
         bpv  Brucella pinnipedialis 6/566
         bcet  Brucella ceti TE10759-12
         bcee  Brucella ceti TE28753-12
         bvl  Brucella vulpis
         bru  Brucella sp. 2002734562
         brj  Brucella sp. 09RB8471
   2/37
   2/37
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   2/37
   2/37
       Ochrobactrum (4)
         oan  Ochrobactrum anthropi ATCC 49188
         oah  Ochrobactrum anthropi OAB
         ops  Ochrobactrum pseudogrignonense
         och  Ochrobactrum sp. A44
   3/37
   2/37
   2/37
   2/37
       Bradyrhizobium (18)
         bja  Bradyrhizobium diazoefficiens USDA 110
         bju  Bradyrhizobium japonicum USDA 6
         bjp  Bradyrhizobium japonicum E109
         bra  Bradyrhizobium sp. ORS 278
         bbt  Bradyrhizobium sp. BTAi1
         brs  Bradyrhizobium sp. S23321
         aol  Bradyrhizobium oligotrophicum
         brc  Bradyrhizobium sp. CCGE-LA001
         brad  Bradyrhizobium sp. BF49
         bic  Bradyrhizobium icense
         bro  Bradyrhizobium sp. ORS 285
         brk  Bradyrhizobium sp. SK17
         bot  Bradyrhizobium ottawaense
         brq  Bradyrhizobium amphicarpaeae
         bgq  Bradyrhizobium guangdongense
         bgz  Bradyrhizobium guangzhouense
         bsym  Bradyrhizobium symbiodeficiens
         bbet  Bradyrhizobium betae
   6/37
   4/37
   4/37
   4/37
   8/37
   4/37
   7/37
  10/37
   4/37
   7/37
   2/37
  10/37
   4/37
   4/37
  10/37
   7/37
   4/37
  13/37
       Rhodopseudomonas (7)
         rpa  Rhodopseudomonas palustris CGA009
         rpb  Rhodopseudomonas palustris HaA2
         rpd  Rhodopseudomonas palustris BisB5
         rpt  Rhodopseudomonas palustris TIE-1
         rpx  Rhodopseudomonas palustris DX-1
   3/37
   4/37
   3/37
   3/37
   6/37
       Nitrobacter (2)
         nha  Nitrobacter hamburgensis
   2/37
       Oligotropha (3)
         oca  Oligotropha carboxidovorans OM5 (Mississippi)
         ocg  Oligotropha carboxidovorans OM5 (Goettingen)
         oco  Oligotropha carboxidovorans OM4
   4/37
   4/37
   4/37
       Bosea (5)
         bop  Bosea sp. PAMC 26642
         bos  Bosea sp. RAC05
         bvv  Bosea vaviloviae
         boi  Bosea sp. Tri-49
         bof  Bosea sp. F3-2
   3/37
  10/37
   4/37
  10/37
   4/37
       Variibacter (1)
         vgo  Variibacter gotjawalensis
   4/37
       Bartonella (24)
         bapi  Bartonella apis
   4/37
       Xanthobacter (1)
         xau  Xanthobacter autotrophicus
  12/37
       Azorhizobium (1)
         azc  Azorhizobium caulinodans
   4/37
       Starkeya (1)
         sno  Starkeya novella
   4/37
       Labrys (1)
         lne  Labrys neptuniae
  10/37
       Ancylobacter (2)
         anc  Ancylobacter sp. TS-1
         apra  Ancylobacter pratisalsi
   3/37
   3/37
       Methylorubrum (6)
         mea  Methylorubrum extorquens AM1
         mdi  Methylorubrum extorquens DM4
         mex  Methylorubrum extorquens PA1
         mch  Methylorubrum extorquens CM4
         mpo  Methylorubrum populi
         mza  Methylorubrum zatmanii
   2/37
   3/37
   3/37
   3/37
   3/37
   3/37
       Methylobacterium (14)
         mrd  Methylobacterium radiotolerans
         met  Methylobacterium sp. 4-46
         mno  Methylobacterium nodulans
         meta  Methylobacterium sp. AMS5
         maqu  Methylobacterium aquaticum
         mee  Methylobacterium currus
         metx  Methylobacterium sp. XJLW
         mtea  Methylobacterium terrae
   4/37
  14/37
  10/37
   8/37
   4/37
  10/37
   2/37
  10/37
       Microvirga (3)
         moc  Microvirga ossetica
         miv  Microvirga sp. 17 mud 1-3
         mico  Microvirga sp. HR1
   3/37
   2/37
   2/37
       Beijerinckia (1)
         bid  Beijerinckia indica
   2/37
       Methylocella (2)
         msl  Methylocella silvestris
         mtun  Methylocella tundrae
  11/37
   9/37
       Methylovirgula (1)
         mlg  Methylovirgula ligni
   3/37
       unclassified Beijerinckiaceae (1)
         bbar  Beijerinckiaceae bacterium RH AL1
   6/37
       Chelatococcus (2)
         chel  Chelatococcus sp. CO-6
         cdq  Chelatococcus daeguensis
   5/37
   2/37
       Hyphomicrobium (4)
         hdn  Hyphomicrobium denitrificans ATCC 51888
         hmc  Hyphomicrobium sp. MC1
         hni  Hyphomicrobium nitrativorans
   2/37
   3/37
   2/37
       Rhodomicrobium (1)
       Pelagibacterium (1)
         phl  Pelagibacterium halotolerans
   3/37
       Filomicrobium (2)
         fil  Candidatus Filomicrobium marinum W
         fiy  Candidatus Filomicrobium marinum Y
   2/37
   2/37
       Devosia (3)
         deq  Devosia sp. H5989
         dei  Devosia sp. I507
         dea  Devosia ginsengisoli
   3/37
   2/37
   3/37
       Blastochloris (2)
       Rhodoplanes (1)
         rhz  Rhodoplanes sp. Z2-YC6860
  16/37
       Maritalea (1)
         mmyr  Maritalea myrionectae
   3/37
       Youhaiella (1)
         yti  Youhaiella tibetensis
   4/37
       Methylocystis (5)
       Methylosinus (1)
       Pleomorphomonas (1)
         pleo  Pleomorphomonas sp. SM30
   4/37
       Martelella (3)
         mey  Martelella endophytica
         maad  Martelella sp. AD-3
         mmed  Martelella mediterranea
   4/37
   8/37
   6/37
       Aureimonas (1)
         aua  Aureimonas sp. AU20
   2/37
       Breoghania (1)
         brn  Breoghania sp. L-A4
   3/37
       Hodgkinia (4)
       Methyloceanibacter (1)
       Tokpelaia (1)
       Pseudorhodoplanes (1)
         psin  Pseudorhodoplanes sinuspersici
   7/37
       Hartmannibacter (1)
         hdi  Hartmannibacter diazotrophicus
   3/37
       Nordella (1)
         noh  Nordella sp. HKS 07
   4/37
       Methyloligella (1)
       unclassified Rhizobiales (1)
         rbm  Rhizobiales bacterium NRL2
   2/37
       Caulobacter (8)
         ccr  Caulobacter vibrioides CB15
         ccs  Caulobacter vibrioides NA1000
         cak  Caulobacter sp. K31
         cse  Caulobacter segnis
         cmb  Caulobacter mirabilis
         cauf  Caulobacter sp. FWC26
   8/37
   8/37
   4/37
   6/37
   2/37
   2/37
       Phenylobacterium (2)
         phb  Phenylobacterium sp. HYN0004
   3/37
       Brevundimonas (10)
         bsb  Brevundimonas subvibrioides
   5/37
       Asticcacaulis (1)
       unclassified Caulobacteraceae (1)
         cbot  Caulobacteraceae bacterium
   4/37
       Ruegeria (4)
         sil  Ruegeria pomeroyi
         sit  Ruegeria sp. TM1040
         rut  Ruegeria sp. THAF33
   3/37
   4/37
   8/37
       Epibacterium (1)
         rmb  Epibacterium mobile
   4/37
       Rhodobacter (7)
         rsp  Rhodobacter sphaeroides 2.4.1
         rsh  Rhodobacter sphaeroides ATCC 17029
         rsk  Rhodobacter sphaeroides KD131
   2/37
   2/37
   2/37
       Jannaschia (1)
         jan  Jannaschia sp. CCS1
   6/37
       Roseobacter (3)
         rpon  Roseobacter ponti
   3/37
       Paracoccus (13)
         pde  Paracoccus denitrificans
         pami  Paracoccus aminophilus
         pye  Paracoccus yeei
         pcon  Paracoccus contaminans
         pzh  Paracoccus zhejiangensis
         paro  Paracoccus sp. BM15
         pamn  Paracoccus aminovorans
         pmut  Paracoccus mutanolyticus
         pars  Paracoccus sp. SC2-6
         parr  Paracoccus sp. Arc7-R13
         pkd  Paracoccus kondratievae
         ppan  Paracoccus pantotrophus
   9/37
   4/37
   5/37
   9/37
   8/37
   3/37
   3/37
   3/37
   3/37
   2/37
   9/37
   9/37
       Dinoroseobacter (1)
       Ketogulonicigenium (3)
         kvl  Ketogulonicigenium vulgare WSH-001
         kvu  Ketogulonicigenium vulgare Y25
         kro  Ketogulonicigenium robustum
   6/37
   6/37
   3/37
       Pseudovibrio (1)
         psf  Pseudovibrio sp. FO-BEG1
   4/37
       Phaeobacter (6)
         pga  Phaeobacter inhibens DSM 17395
         pgl  Phaeobacter inhibens 2.10
         pgd  Phaeobacter gallaeciensis DSM 26640
         php  Phaeobacter porticola
         ppic  Phaeobacter piscinae
         phq  Phaeobacter sp. LSS9
   2/37
   3/37
   3/37
   4/37
   5/37
   3/37
       Octadecabacter (4)
         oar  Octadecabacter arcticus
         oct  Octadecabacter sp. SW4
   4/37
   9/37
       Leisingera (3)
         lmd  Leisingera methylohalidivorans
         lej  Leisingera sp. NJS204
         laqu  Leisingera aquaemixtae
   3/37
   5/37
   4/37
       Roseibacterium (1)
       Planktomarina (1)
         ptp  Planktomarina temperata
   2/37
       Celeribacter (4)
         cid  Celeribacter indicus
         cmar  Celeribacter marinus
         ceh  Celeribacter ethanolicus
         cmag  Celeribacter manganoxidans
  10/37
   6/37
  15/37
   5/37
       Marinovum (1)
       Confluentimicrobium (1)
         con  Confluentimicrobium sp. EMB200-NS6
  11/37
       Rhodovulum (3)
         rsu  Rhodovulum sulfidophilum
         rhm  Rhodovulum sp. MB263
   2/37
   2/37
       Pannonibacter (1)
         pphr  Pannonibacter phragmitetus
  10/37
       Halocynthiibacter (1)
         hat  Halocynthiibacter arcticus
   3/37
       Labrenzia (5)
         lap  Labrenzia sp. CP4
         lagg  Labrenzia aggregata
         labr  Labrenzia sp. VG12
         labp  Labrenzia sp. PHM005
         labt  Labrenzia sp. THAF35
   3/37
   6/37
   2/37
   4/37
   6/37
       Defluviimonas (1)
         daa  Defluviimonas alba
   6/37
       Yangia (2)
         yan  Yangia sp. CCB-MM3
         ypac  Yangia pacifica
   2/37
   2/37
       Sulfitobacter (6)
         suam  Sulfitobacter sp. AM1-D1
         spse  Sulfitobacter pseudonitzschiae
         sulz  Sulfitobacter sp. SK012
         suli  Sulfitobacter sp. JL08
         suld  Sulfitobacter sp. D7
         sdo  Sulfitobacter donghicola
   7/37
   2/37
   3/37
   3/37
   8/37
   3/37
       Donghicola (1)
       Salipiger (1)
       Tateyamaria (1)
         tom  Tateyamaria omphalii
   2/37
       Pelagibaca (1)
         paby  Pelagibaca abyssi
   3/37
       Thioclava (1)
         thw  Thioclava nitratireducens
   2/37
       Roseovarius (5)
         rmm  Roseovarius mucosus
         rok  Roseovarius sp. AK1035
         rid  Roseovarius indicus
         rom  Roseovarius sp. MME-070
         roh  Roseovarius sp. THAF27
   9/37
   9/37
   4/37
   3/37
   2/37
       Yoonia (1)
         lvs  Yoonia vestfoldensis
   2/37
       Antarctobacter (1)
         aht  Antarctobacter heliothermus
   3/37
       Rhodobaca (1)
         rbg  Rhodobaca barguzinensis
   3/37
       Sagittula (1)
         sagu  Sagittula sp. P11
   3/37
       Thalassococcus (1)
         thaa  Thalassococcus sp. S3
   5/37
       Gemmobacter (1)
         geh  Gemmobacter sp. HYN0069
   2/37
       Tabrizicola (1)
         taw  Tabrizicola piscis
   2/37
       Silicimonas (1)
         salo  Silicimonas algicola
   2/37
       Sedimentitalea (1)
       Haematobacter (1)
         hml  Haematobacter massiliensis
   5/37
       Boseongicola (1)
         boo  Boseongicola sp. CCM32
   5/37
       Pseudorhodobacter (1)
       Litoreibacter (1)
         lit  Litoreibacter sp. LN3S51
   3/37
       Oceanicola (1)
         ocd  Oceanicola sp. D3
   5/37
       Maribius (1)
       Roseivivax (1)
         rot  Roseivivax sp. THAF197b
   8/37
       Paraoceanicella (1)
         ppru  Paraoceanicella profunda
   6/37
       Stappia (1)
         siw  Stappia indica
   4/37
       Pseudohalocynthiibacter (1)
       Monaibacterium (1)
         mon  Monaibacterium sp. ALG8
   9/37
       Mameliella (1)
         malu  Mameliella alba
   2/37
       Thalassobius (1)
         tgl  Thalassobius gelatinovorus
   2/37
       unclassified Rhodobacteraceae (4)
         thas  Rhodobacteraceae bacterium SH-1
         hdh  Rhodobacteraceae bacterium RR4-56
   5/37
   3/37
       Maricaulis (1)
       Hyphomonas (1)
         hne  Hyphomonas neptunium
   3/37
       Hirschia (1)
         hba  Hirschia baltica
   2/37
       Glycocaulis (1)
         gak  Glycocaulis alkaliphilus
   2/37
       Hyphomonadaceae (1)
         hbc  Hyphomonadaceae bacterium UKL13-1
   5/37
       Zymomonas (8)
       Novosphingobium (10)
         nar  Novosphingobium aromaticivorans
         npp  Novosphingobium sp. PP1Y
         npn  Novosphingobium pentaromativorans
         nre  Novosphingobium resinovorum
         nov  Novosphingobium sp. P6W
         not  Novosphingobium sp. THN1
         ntd  Novosphingobium tardaugens
         nor  Novosphingobium sp. ABRDHK2
         nog  Novosphingobium sp. Gsoil 351
  26/37
  25/37
  20/37
  17/37
   8/37
  15/37
   4/37
  10/37
  17/37
       Sphingopyxis (12)
         sal  Sphingopyxis alaskensis
         sphk  Sphingopyxis fribergensis
         smag  Sphingopyxis macrogoltabida EY-1
         smaz  Sphingopyxis macrogoltabida 203
         ster  Sphingopyxis terrae
         sgi  Sphingopyxis granuli
         sphq  Sphingopyxis sp. QXT-31
         spho  Sphingopyxis sp. MG
         sphx  Sphingopyxis sp. PAMC25046
         sphu  Uncultured Sphingopyxis sp. UC10
   2/37
   7/37
  12/37
  17/37
   6/37
  12/37
   2/37
   8/37
   2/37
   4/37
       Sphingomonas (18)
         swi  Sphingomonas wittichii
         sphd  Sphingomonas wittichii DC-6
         sphm  Sphingomonas sp. MM-1
         sphi  Sphingomonas hengshuiensis
         ssan  Sphingomonas sanxanigenens
         smy  Sphingomonas melonis
         span  Sphingomonas panacis
         skr  Sphingomonas koreensis
         spkc  Sphingomonas sp. KC8
         sphc  Sphingomonas sp. Cra20
         sphf  Sphingomonas sp. FARSPH
         spha  Sphingomonas sp. YZ-8
         spau  Sphingomonas paucimobilis
  20/37
  15/37
  13/37
  10/37
   8/37
   5/37
  12/37
   3/37
   6/37
   7/37
   4/37
   4/37
   2/37
       Sphingobium (16)
         sjp  Sphingobium japonicum
         sch  Sphingobium chlorophenolicum
         ssy  Sphingobium sp. SYK-6
         syb  Sphingobium sp. YBL2
         sbd  Sphingobium baderi
         spmi  Sphingobium sp. MI1205
         sphb  Sphingobium sp. EP60837
         sphr  Sphingobium sp. RAC03
         sinb  Sphingobium indicum
         spht  Sphingobium sp. TKS
         shyd  Sphingobium hydrophobicum
         sya  Sphingobium yanoikuyae
         spyg  Sphingobium sp. YG1
         sufl  Sphingobium fuliginis
  14/37
   7/37
  10/37
  15/37
   5/37
   4/37
   6/37
  15/37
  14/37
  13/37
  14/37
  11/37
   5/37
  10/37
       Citromicrobium (1)
         cij  Citromicrobium sp. JL477
   3/37
       Sphingorhabdus (3)
         sfla  Sphingorhabdus sp. SMR4y
         sphy  Sphingorhabdus sp. YGSMI21
   7/37
  21/37
       Blastomonas (2)
         blas  Blastomonas sp. RAC04
         bfw  Blastomonas fulva
  11/37
   9/37
       Rhizorhabdus (1)
         rdi  Rhizorhabdus dicambivorans
  13/37
       Sphingosinicella (2)
         smic  Sphingosinicella microcystinivorans
         sphs  Sphingosinicella sp. BN140058
   4/37
   3/37
       Tardibacter (1)
         sphj  Tardibacter chloracetimidivorans
  16/37
       Sphingosinithalassobacter (1)
       Hankyongella (1)
       Parasphingopyxis (1)
       Erythrobacter (8)
         elq  Erythrobacter litoralis DSM 8509
         ery  Erythrobacter atlanticus
         erk  Erythrobacter sp. KY5
   3/37
  19/37
   3/37
       Altererythrobacter (7)
         aay  Altererythrobacter atlanticus
         aep  Altererythrobacter epoxidivorans
         anh  Altererythrobacter namhicola
         alb  Altererythrobacter sp. B11
         alh  Altererythrobacter sp. BO-6
   7/37
   2/37
   4/37
  14/37
   4/37
       Croceicoccus (2)
         cna  Croceicoccus naphthovorans
         cman  Croceicoccus marinus
  15/37
   3/37
       Porphyrobacter (4)
         phz  Porphyrobacter sp. HT-58-2
   4/37
       Gluconobacter (5)
       Granulobacter (4)
       Acidiphilium (2)
       Gluconacetobacter (2)
         gdi  Gluconacetobacter diazotrophicus PA1 5 (Brazil)
         gdj  Gluconacetobacter diazotrophicus PA1 5 (JGI)
   2/37
   2/37
       Komagataeibacter (6)
         ksc  Komagataeibacter saccharivorans
   3/37
       Acetobacter (19)
         asz  Acetobacter senegalensis
         aace  Acetobacter aceti
         ato  Acetobacter tropicalis
         aoy  Acetobacter oryzoeni
   3/37
   2/37
   4/37
   2/37
       Asaia (1)
       Kozakia (1)
       Roseomonas (3)
         rgi  Roseomonas gilardii
         ros  Roseomonas sp. FDAARGOS_362
         rmuc  Roseomonas mucosa
  10/37
   4/37
  10/37
       Neoasaia (1)
       Commensalibacter (2)
       Stella (2)
         shum  Stella humosa
         svc  Stella vacuolata
   4/37
   4/37
       Neokomagataea (2)
         ntn  Neokomagataea tanensis
   2/37
       Swingsia (2)
       Bombella (2)
       Rhodospirillum (3)
       Pararhodospirillum (1)
       Magnetospirillum (5)
       Azospirillum (10)
         azl  Azospirillum sp. B510
         ali  Azospirillum lipoferum
         abs  Azospirillum brasilense Sp245
         abq  Azospirillum brasilense Az39
         abf  Azospirillum brasilense Sp7
         ati  Azospirillum thiophilum
         ahu  Azospirillum humicireducens
         azt  Azospirillum sp. TSH58
         azm  Azospirillum ramasamyi
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       Tistrella (1)
         tmo  Tistrella mobilis
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       Endolissoclinum (2)
       Thalassospira (3)
         txi  Thalassospira xiamenensis
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       Magnetospira (1)
         magq  Magnetospira sp. QH-2
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       Haematospirillum (1)
       Nitrospirillum (1)
         nao  Nitrospirillum amazonense
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       Niveispirillum (1)
         ncb  Niveispirillum cyanobacteriorum
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       Ferrovibrio (1)
         fer  Ferrovibrio terrae
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       Hypericibacter (2)
         htq  Hypericibacter terrae
         hadh  Hypericibacter adhaerens
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       Parvularcula (1)
       Magnetococcus (1)
       Pelagibacter (3)
         pel  Candidatus Pelagibacter sp. IMCC9063
         peg  Candidatus Pelagibacter giovannonii
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       unclassified Pelagibacteraceae (2)
       Emcibacter (1)
         ecog  Emcibacter congregatus
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       Micavibrio (2)
         mai  Micavibrio aeruginosavorus ARL-13
         man  Micavibrio aeruginosavorus EPB
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       Polymorphum (1)
         pgv  Polymorphum gilvum
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       Phreatobacter (2)
         phr  Phreatobacter cathodiphilus
         pstg  Phreatobacter stygius
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       Puniceispirillum (1)
     Oligoflexia (12)
       Bdellovibrio (8)
         bbat  Bdellovibrio bacteriovorus Tiberius
         bbw  Bdellovibrio bacteriovorus W
         bdq  Bdellovibrio sp. qaytius
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       Halobacteriovorax (2)
       Bacteriovorax (1)
       unclassified Silvanigrellales (1)
     Other proteobacteria (10)
       Acidithiobacillus (7)
         afi  Acidithiobacillus ferrivorans
         afj  Acidithiobacillus ferridurans
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       Mariprofundus (2)
       Hydrogenophilus (1)
         htl  Hydrogenophilus thermoluteolus
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     Firmicutes - Bacilli (817)
       Bacillus (140)
         bsu  Bacillus subtilis subsp. subtilis 168
         bsr  Bacillus subtilis subsp. subtilis RO-NN-1
         bsl  Bacillus subtilis subsp. subtilis BSP1
         bsh  Bacillus subtilis subsp. subtilis 6051-HGW
         bsy  Bacillus subtilis subsp. subtilis BAB-1
         bsut  Bacillus subtilis subsp. subtilis AG1839
         bsul  Bacillus subtilis subsp. subtilis JH642
         bsus  Bacillus subtilis subsp. subtilis OH 131.1
         bss  Bacillus subtilis subsp. spizizenii W23
         bst  Bacillus subtilis subsp. spizizenii TU-B-10
         bso  Bacillus subtilis subsp. natto BEST195
         bsn  Bacillus subtilis BSn5
         bsq  Bacillus subtilis QB928
         bsx  Bacillus subtilis XF-1
         bsp  Bacillus subtilis PY79
         bli  Bacillus licheniformis ATCC 14580
         bld  Bacillus licheniformis DSM 13 = ATCC 14580
         blh  Bacillus paralicheniformis
         bay  Bacillus velezensis FZB42
         baq  Bacillus velezensis CAU B946
         bya  Bacillus velezensis YAU B9601-Y2
         bamp  Bacillus velezensis AS43.3
         baml  Bacillus velezensis UCMB5036
         bama  Bacillus velezensis UCMB5033
         bamn  Bacillus velezensis UCMB5113
         bamb  Bacillus velezensis NAU-B3
         bamt  Bacillus velezensis TrigoCor1448
         bamy  Bacillus velezensis SQR9
         bmp  Bacillus velezensis JS25R
         bao  Bacillus amyloliquefaciens DSM 7
         baz  Bacillus amyloliquefaciens TA208
         bql  Bacillus amyloliquefaciens LL3
         bxh  Bacillus amyloliquefaciens XH7
         bqy  Bacillus amyloliquefaciens Y2
         bami  Bacillus amyloliquefaciens IT-45
         bamc  Bacillus amyloliquefaciens CC178
         bamf  Bacillus amyloliquefaciens LFB112
         bsia  Bacillus siamensis
         bae  Bacillus atrophaeus
         bvm  Bacillus vallismortis
         bson  Bacillus sonorensis
         bht  Bacillus halotolerans
         bha  Bacillus halodurans
         ban  Bacillus anthracis Ames
         bar  Bacillus anthracis Ames Ancestor
         bat  Bacillus anthracis Sterne
         bah  Bacillus anthracis CDC 684
         bai  Bacillus anthracis A0248
         bax  Bacillus anthracis H9401
         bant  Bacillus anthracis A16
         banr  Bacillus anthracis A16R
         bans  Bacillus anthracis SVA11
         banh  Bacillus anthracis HYU01
         banv  Bacillus anthracis Vollum
         bce  Bacillus cereus ATCC 14579
         bca  Bacillus cereus ATCC 10987
         bcz  Bacillus cereus E33L
         bcr  Bacillus cereus AH187
         bcb  Bacillus cereus B4264
         bcu  Bacillus cereus AH820
         bcg  Bacillus cereus G9842
         bcq  Bacillus cereus Q1
         bcx  Bacillus cereus 03BB102
         bal  Bacillus cereus biovar anthracis CI
         bnc  Bacillus cereus NC7401
         bcf  Bacillus cereus F837/76
         bcer  Bacillus cereus FRI-35
         bcef  Bacillus cereus FT9
         bcy  Bacillus cytotoxicus
         btk  Bacillus thuringiensis serovar konkukian 97-27
         btl  Bacillus thuringiensis Al Hakam
         btb  Bacillus thuringiensis BMB171
         btt  Bacillus thuringiensis serovar kurstaki HD73
         bthr  Bacillus thuringiensis serovar kurstaki YBT-1520
         bthi  Bacillus thuringiensis serovar kurstaki HD-1
         btc  Bacillus thuringiensis serovar chinensis CT-43
         btf  Bacillus thuringiensis serovar finitimus YBT-020
         btm  Bacillus thuringiensis MC28
         btg  Bacillus thuringiensis Bt407
         bti  Bacillus thuringiensis HD-771
         btn  Bacillus thuringiensis HD-789
         btht  Bacillus thuringiensis serovar thuringiensis IS5056
         bthu  Bacillus thuringiensis YBT-1518
         btw  Bacillus thuringiensis HD1011
         bthy  Bacillus thuringiensis YWC2-8
         bwe  Bacillus mycoides KBAB4
         bww  Bacillus mycoides WSBC 10204
         bmyo  Bacillus mycoides ATCC 6462
         bty  Bacillus toyonensis
         bmyc  Bacillus pseudomycoides 219298
         bby  Bacillus bombysepticus
         bwd  Bacillus wiedmannii
         btro  Bacillus tropicus
         bcl  Bacillus clausii
         bpu  Bacillus pumilus SAFR-032
         bpum  Bacillus pumilus MTCC B6033
         bpus  Bacillus pumilus SH-B9
         bpf  Bacillus pseudofirmus
         bmq  Bacillus megaterium QM B1551
         bmd  Bacillus megaterium DSM 319
         bmh  Bacillus megaterium WSH-002
         bmeg  Bacillus megaterium NBRC 15308 = ATCC 14581
         bco  Bacillus cellulosilyticus
         bck  Bacillus coagulans 2-6
         bag  Bacillus coagulans 36D1
         bjs  Bacillus sp. JS
         baci  Bacillus sp. 1NLA3E
         bif  Bacillus infantis
         ble  Bacillus lehensis
         bmet  Bacillus methanolicus
         gst  Bacillus sp. X1(2014)
         bacw  Bacillus sp. WP8
         bacp  Bacillus sp. Pc3
         bacb  Bacillus sp. BH072
         baco  Bacillus sp. OxB-1
         bacy  Bacillus sp. YP1
         bacl  Bacillus sp. BS34A
         balm  Bacillus sp. LM 4-2
         beo  Bacillus filamentosus
         bsm  Bacillus smithii
         bsj  Bacillus simplex
         bon  Bacillus oceanisediminis
         bgy  Bacillus glycinifermentans
         bfx  Bacillus flexus
         bgi  Bacillus gibsonii
         bxi  Bacillus xiamenensis
         bhk  Bacillus horikoshii
         bkw  Bacillus krulwichiae
         bbev  Bacillus beveridgei
         bko  Bacillus kochii
         balt  Bacillus altitudinis
         bacs  Bacillus sp. SDLI1
         bmur  Bacillus muralis
         bsaf  Bacillus safensis
         bit  Bacillus intestinalis
         bacq  Bacillus sp. Y1
         bcir  Bacillus circulans
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       Oceanobacillus (3)
         oih  Oceanobacillus iheyensis
         ocn  Oceanobacillus sp. 160
         ocb  Oceanobacillus sp. 143
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       Geobacillus (18)
         gte  Geobacillus thermoleovorans CCB_US3_UF5
         gtk  Geobacillus thermoleovorans KCTC 3570
         gtm  Geobacillus thermocatenulatus
         gtn  Geobacillus thermodenitrificans
         gyc  Geobacillus sp. Y412MC61
         gya  Geobacillus sp. Y412MC52
         gct  Geobacillus sp. C56-T3
         gmc  Geobacillus sp. Y4.1MC1
         ggh  Geobacillus sp. GHH01
         gjf  Geobacillus genomosp. 3
         gse  Geobacillus stearothermophilus
         gsr  Geobacillus subterraneus
         gej  Geobacillus sp. JS12
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       Parageobacillus (3)
         gth  Parageobacillus thermoglucosidasius C56-YS93
         ptl  Parageobacillus thermoglucosidasius DSM 2542
         ptb  Parageobacillus toebii NBRC 107807
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       Anoxybacillus (6)
         anm  Anoxybacillus sp. B2M1
         aamy  Anoxybacillus amylolyticus
         anl  Anoxybacillus sp. B7M1
         and  Anoxybacillus sp. PDR2
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       Amphibacillus (1)
         axl  Amphibacillus xylanus
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       Lysinibacillus (8)
         lsp  Lysinibacillus sphaericus
         lgy  Lysinibacillus varians
         lfu  Lysinibacillus fusiformis
         lys  Lysinibacillus sp. YS11
         lyb  Lysinibacillus sp. B2A1
         lyz  Lysinibacillus sp. 2017
         lyg  Lysinibacillus sp. SGAir0095
         lpak  Lysinibacillus pakistanensis
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       Halobacillus (3)
         hhd  Halobacillus halophilus
         hmn  Halobacillus mangrovi
         hli  Halobacillus litoralis
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       Terribacillus (1)
         tap  Terribacillus goriensis
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       Virgibacillus (7)
         vir  Virgibacillus sp. SK37
         vhl  Virgibacillus halodenitrificans
         vig  Virgibacillus sp. 6R
         vil  Virgibacillus phasianinus
         vne  Virgibacillus necropolis
         vpn  Virgibacillus dokdonensis
         vim  Virgibacillus sp. MSP4-1
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       Lentibacillus (1)
         lao  Lentibacillus amyloliquefaciens
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       Fictibacillus (2)
         fpn  Fictibacillus phosphorivorans
         far  Fictibacillus arsenicus
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       Salimicrobium (1)
         sje  Salimicrobium jeotgali
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       Aeribacillus (1)
         apak  Aeribacillus pallidus
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       Aquibacillus (1)
         aqt  Aquibacillus sp. TKL69
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       Psychrobacillus (2)
         psyh  Psychrobacillus sp. AK 1817
         psyo  Psychrobacillus glaciei
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       Pradoshia (1)
         prd  Pradoshia sp. D12
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       Gracilibacillus (1)
         grc  Gracilibacillus sp. SCU50
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       Salicibibacter (2)
         rue  Salicibibacter kimchii
         sale  Salicibibacter halophilus
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       Pontibacillus (1)
         pof  Pontibacillus sp. HMF3514
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       Sporolactobacillus (1)
         stea  Sporolactobacillus terrae
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       unclassified Sporolactobacillaceae (1)
         bse  Bacillus selenitireducens
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       Staphylococcus (92)
         sau  Staphylococcus aureus subsp. aureus N315 (MRSA/VSSA)
         sav  Staphylococcus aureus subsp. aureus Mu50 (MRSA/VISA)
         saw  Staphylococcus aureus subsp. aureus Mu3 (MRSA/hetero-VISA)
         sah  Staphylococcus aureus subsp. aureus JH1 (MRSA/VSSA)
         saj  Staphylococcus aureus subsp. aureus JH9 (MRSA/VISA)
         sam  Staphylococcus aureus subsp. aureus MW2 (CA-MRSA)
         sas  Staphylococcus aureus subsp. aureus MSSA476 (MSSA)
         sar  Staphylococcus aureus subsp. aureus MRSA252 (MRSA)
         sac  Staphylococcus aureus subsp. aureus COL (MRSA)
         sax  Staphylococcus aureus subsp. aureus USA300_TCH1516 (CA-MRSA)
         saa  Staphylococcus aureus subsp. aureus USA300_FPR3757 (CA-MRSA)
         sao  Staphylococcus aureus subsp. aureus NCTC8325
         sae  Staphylococcus aureus subsp. aureus Newman
         sad  Staphylococcus aureus subsp. aureus ED98
         suu  Staphylococcus aureus subsp. aureus M013 (CA-MRSA)
         suv  Staphylococcus aureus subsp. aureus VC40
         sue  Staphylococcus aureus subsp. aureus ED133
         suj  Staphylococcus aureus subsp. aureus JKD6159 (CA-MRSA)
         suk  Staphylococcus aureus subsp. aureus JKD6008 (MRSA/VISA)
         suc  Staphylococcus aureus subsp. aureus ECT-R 2 (MSSA)
         sut  Staphylococcus aureus subsp. aureus T0131 (MRSA)
         suq  Staphylococcus aureus subsp. aureus TCH60
         suz  Staphylococcus aureus subsp. aureus 11819-97 (CA-MRSA)
         sud  Staphylococcus aureus subsp. aureus 71193 (MSSA)
         sux  Staphylococcus aureus subsp. aureus HO 5096 0412 (MRSA)
         suw  Staphylococcus aureus subsp. aureus TW20 (MRSA)
         sug  Staphylococcus aureus subsp. aureus ST398 (MRSA)
         suf  Staphylococcus aureus subsp. aureus LGA251 (MRSA)
         saua  Staphylococcus aureus subsp. aureus 55/2053
         saue  Staphylococcus aureus subsp. aureus 6850 (MSSA)
         saun  Staphylococcus aureus subsp. aureus CN1 (CA-MRSA)
         saus  Staphylococcus aureus subsp. aureus SA40 (CA-MRSA)
         sauu  Staphylococcus aureus subsp. aureus SA957 (CA-MRSA)
         saug  Staphylococcus aureus subsp. aureus SA268 (CA-MRSA)
         sauz  Staphylococcus aureus subsp. aureus Z172 (MRSA/VISA)
         saut  Staphylococcus aureus subsp. aureus ST228/10388 (MRSA)
         sauj  Staphylococcus aureus subsp. aureus ST228/10497 (MRSA)
         sauk  Staphylococcus aureus subsp. aureus ST228/15532 (MRSA)
         sauq  Staphylococcus aureus subsp. aureus ST228/16035 (MRSA)
         sauv  Staphylococcus aureus subsp. aureus ST228/18412 (MRSA)
         sauw  Staphylococcus aureus subsp. aureus ST228/16125 (MRSA)
         saux  Staphylococcus aureus subsp. aureus ST228/18341 (MRSA)
         sauy  Staphylococcus aureus subsp. aureus ST228/18583 (MRSA)
         sauf  Staphylococcus aureus subsp. aureus FDAARGOS_5
         sab  Staphylococcus aureus RF122
         suy  Staphylococcus aureus 04-02981 (MRSA)
         saub  Staphylococcus aureus 08BA02176 (LA-MRSA)
         saum  Staphylococcus aureus M1 (MRSA)
         sauc  Staphylococcus aureus CA-347 (MRSA)
         saur  Staphylococcus aureus Bmb9393 (MRSA)
         saui  Staphylococcus aureus USA300-ISMMS1 (MRSA)
         saud  Staphylococcus aureus 502A
         sams  Staphylococcus aureus MS4
         suh  Staphylococcus argenteus
         ser  Staphylococcus epidermidis RP62A (MRSE)
         sep  Staphylococcus epidermidis ATCC 12228
         sepp  Staphylococcus epidermidis PM221
         seps  Staphylococcus epidermidis SEI
         sha  Staphylococcus haemolyticus JCSC1435
         shh  Staphylococcus haemolyticus Sh29/312/L2
         ssp  Staphylococcus saprophyticus
         sca  Staphylococcus carnosus
         slg  Staphylococcus lugdunensis HKU09-01
         sln  Staphylococcus lugdunensis N920143
         swa  Staphylococcus warneri
         spas  Staphylococcus pasteuri
         sxy  Staphylococcus xylosus HKUOPL8
         sxl  Staphylococcus xylosus SMQ-121
         sxo  Staphylococcus xylosus C2a
         shu  Staphylococcus hyicus
         scap  Staphylococcus capitis subsp. capitis
         sagq  Staphylococcus agnetis
         seqo  Staphylococcus equorum
         ssif  Staphylococcus simulans
         scv  Staphylococcus condimenti
         spet  Staphylococcus pettenkoferi
         scoh  Staphylococcus cohnii
         sscu  Staphylococcus sciuri
         snl  Staphylococcus nepalensis
         skl  Staphylococcus kloosii
         shom  Staphylococcus hominis
         smus  Staphylococcus muscae
         scar  Staphylococcus caprae
         sff  Staphylococcus fleurettii
         schr  Staphylococcus chromogenes
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       Macrococcus (3)
         mcl  Macrococcus caseolyticus
         mcak  Macrococcus canis
         macr  Macrococcus sp. IME1552
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       Salinicoccus (1)
         shv  Salinicoccus halodurans
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       Auricoccucs (1)
         sbac  Auricoccus indicus
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       Listeria (47)
         lmo  Listeria monocytogenes EGD-e (serotype 1/2a)
         lmn  Listeria monocytogenes 08-5578 (serotype 1/2a)
         lmy  Listeria monocytogenes 08-5923 (serotype 1/2a)
         lmt  Listeria monocytogenes 10403S (serotype 1/2a)
         lmoc  Listeria monocytogenes SLCC5850 (serotype 1/2a)
         lmoe  Listeria monocytogenes La111 (serotype 1/2a)
         lmob  Listeria monocytogenes N53-1 (serotype 1/2a)
         lmod  Listeria monocytogenes EGD (serotype 1/2a)
         lmow  Listeria monocytogenes WSLC1001 (serotype 1/2a)
         lmoq  Listeria monocytogenes 6179 (serotype 1/2a)
         lmr  Listeria monocytogenes R479a (serotype 1/2a)
         lmom  Listeria monocytogenes Lm60 (serotype 1/2a)
         lmf  Listeria monocytogenes F2365 (serotype 4b)
         lmc  Listeria monocytogenes CLIP 80459 (serotype 4b)
         lmog  Listeria monocytogenes serotype 4b LL195
         lmp  Listeria monocytogenes 07PF0776 (serotype 4b)
         lmol  Listeria monocytogenes L312 (serotype 4b)
         lmoj  Listeria monocytogenes J1816 (serotype 4b)
         lmoz  Listeria monocytogenes J1-220 (serotype 4b)
         lmox  Listeria monocytogenes WSLC1042 (serotype 4b)
         lmh  Listeria monocytogenes HCC23 (serotype 4a)
         lmq  Listeria monocytogenes M7 (serotype 4a)
         lml  Listeria monocytogenes L99 (serotype 4a)
         lmg  Listeria monocytogenes FSL R2-561
         lms  Listeria monocytogenes Finland 1998
         lmj  Listeria monocytogenes J0161
         lmw  Listeria monocytogenes SLCC2755 (serotype 1/2b)
         lmx  Listeria monocytogenes SLCC2372 (serotype 1/2c)
         lmz  Listeria monocytogenes serotype 7 SLCC2482
         lmon  Listeria monocytogenes SLCC2376 (serotype 4c)
         lmos  Listeria monocytogenes SLCC7179 (serotype 3a)
         lmoo  Listeria monocytogenes SLCC2378 (serotype 4e)
         lmoy  Listeria monocytogenes SLCC2479 (serotype 3c)
         lmot  Listeria monocytogenes SLCC2540 (serotype 3b)
         lmoa  Listeria monocytogenes ATCC 19117 (serotype 4d)
         lmok  Listeria monocytogenes NE dc2014
         lmv  Listeria monocytogenes CFSAN006122
         lin  Listeria innocua (serotype 6a)
         lwe  Listeria welshimeri
         lsg  Listeria seeligeri
         liv  Listeria ivanovii subsp. ivanovii PAM 55
         lii  Listeria ivanovii subsp. ivanovii WSLC 3010
         liw  Listeria ivanovii WSLC3009
         lia  Listeria ivanovii subsp. londoniensis WSLC 30167
         lio  Listeria ivanovii subsp. londoniensis WSLC 30151
         lwi  Listeria weihenstephanensis
         lgz  Listeria grayi
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       Brochothrix (1)
         bths  Brochothrix thermosphacta
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       Exiguobacterium (5)
         esi  Exiguobacterium sibiricum
         eat  Exiguobacterium sp. AT1b
         ean  Exiguobacterium antarcticum
         exm  Exiguobacterium sp. MH3
         exu  Exiguobacterium sp. U13-1
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       Gemella (5)
         got  Gemella sp. oral taxon 928
         gmo  Gemella morbillorum
         geq  Gemella sp. ND 6198
         gsa  Gemella sanguinis
         gha  Gemella haemolysans
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       Brevibacillus (5)
         bbe  Brevibacillus brevis
         blr  Brevibacillus laterosporus
         bfm  Brevibacillus formosus
         brw  Brevibacillus sp. 7WMA2
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       Paenibacillus (49)
         pjd  Paenibacillus sp. JDR-2
         gym  Paenibacillus sp. Y412MC10
         ppy  Paenibacillus polymyxa E681
         ppm  Paenibacillus polymyxa SC2
         ppo  Paenibacillus polymyxa M1
         ppol  Paenibacillus polymyxa CR1
         ppq  Paenibacillus polymyxa SQR-21
         ppoy  Paenibacillus polymyxa Sb3-1
         pms  Paenibacillus mucilaginosus KNP414
         pmq  Paenibacillus mucilaginosus 3016
         pmw  Paenibacillus mucilaginosus K02
         pta  Paenibacillus terrae
         plv  Paenibacillus larvae
         pbd  Paenibacillus borealis
         pgm  Paenibacillus graminis
         pod  Paenibacillus odorifer
         paen  Paenibacillus sp. FSL P4-0081
         pste  Paenibacillus stellifer
         pbj  Paenibacillus beijingensis
         pih  Paenibacillus sp. IHBB 10380
         pri  Paenibacillus riograndensis
         ppeo  Paenibacillus peoriae
         pnp  Paenibacillus naphthalenovorans
         pow  Paenibacillus sp. 32O-W
         pbv  Paenibacillus bovis
         pxl  Paenibacillus xylanexedens
         pdh  Paenibacillus donghaensis
         pib  Paenibacillus ihbetae
         pcx  Paenibacillus crassostreae
         pkb  Paenibacillus kribbensis
         paih  Paenibacillus sp. IHB B 3084
         pvo  Paenibacillus vortex
         plw  Paenibacillus lautus
         plen  Paenibacillus lentus
         ppsc  Paenibacillus psychroresistens
         plut  Paenibacillus lutimineralis
         palb  Paenibacillus albus
         pchi  Paenibacillus chitinolyticus
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       Thermobacillus (1)
         tco  Thermobacillus composti
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       Aneurinibacillus (2)
         anx  Aneurinibacillus sp. XH2
         asoc  Aneurinibacillus soli
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       Cohnella (2)
         coh  Cohnella candidum
         cohn  Cohnella sp. HS21
   8/37
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       Saccharibacillus (1)
         saca  Saccharibacillus brassicae
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       Alicyclobacillus (2)
         aac  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
         aad  Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1
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       Kyrpidia (2)
         bts  Kyrpidia tusciae
         kyr  Kyrpidia spormannii
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       Tumebacillus (2)
       Solibacillus (3)
         siv  Solibacillus silvestris StLB046
         ssil  Solibacillus silvestris DSM 12223
         sob  Solibacillus sp. R5-41
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       Planococcus (11)
         pln  Planococcus sp. PAMC 21323
         pku  Planococcus kocurii
         prt  Planococcus rifietoensis
         pll  Planococcus versutus
         pdg  Planococcus donghaensis
         phc  Planococcus halocryophilus
         pmar  Planococcus sp. Y42
         ppla  Planococcus plakortidis
         pfae  Planococcus faecalis
         plx  Planococcus sp. MB-3u-03
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       Jeotgalibacillus (1)
         jeo  Jeotgalibacillus malaysiensis
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       Kurthia (2)
         kur  Kurthia sp. 11kri321
         kzo  Kurthia zopfii
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       Sporosarcina (6)
         spsy  Sporosarcina psychrophila
         spor  Sporosarcina sp. P33
         spop  Sporosarcina sp. P37
         sure  Sporosarcina ureae
         spae  Sporosarcina pasteurii
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       Rummeliibacillus (1)
         rst  Rummeliibacillus stabekisii
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       Paenisporosarcina (2)
         paek  Paenisporosarcina sp. K2R23-3
         panc  Paenisporosarcina antarctica
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       Planomicrobium (2)
         pgq  Planomicrobium glaciei
         play  Planomicrobium sp. Y50
   4/37
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       Novibacillus (1)
         ntr  Novibacillus thermophilus
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       Laceyella (1)
       Thermoactinomyces (1)
       Kroppenstedtia (2)
         kpul  Kroppenstedtia pulmonis
         keb  Kroppenstedtia eburnea
   5/37
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       Lactococcus (19)
         llk  Lactococcus lactis subsp. lactis KF147
         llx  Lactococcus lactis subsp. lactis NCDO 2118
         llm  Lactococcus lactis subsp. cremoris MG1363
         llc  Lactococcus lactis subsp. cremoris SK11
         llr  Lactococcus lactis subsp. cremoris A76
         lln  Lactococcus lactis subsp. cremoris NZ9000
         llw  Lactococcus lactis subsp. cremoris KW2
         llj  Lactococcus lactis AI06
         lgr  Lactococcus garvieae ATCC 49156
         lgv  Lactococcus garvieae Lg2
         lpk  Lactococcus piscium
         lrn  Lactococcus raffinolactis
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       Streptococcus (149)
         spy  Streptococcus pyogenes M1 GAS (serotype M1)
         spz  Streptococcus pyogenes MGAS5005 (serotype M1)
         spym  Streptococcus pyogenes M1 476 (serotype M1)
         spya  Streptococcus pyogenes A20 (serotype M1)
         spg  Streptococcus pyogenes MGAS315 (serotype M3)
         sps  Streptococcus pyogenes SSI-1 (serotype M3)
         sph  Streptococcus pyogenes MGAS10270 (serotype M2)
         spi  Streptococcus pyogenes MGAS10750 (serotype M4)
         spj  Streptococcus pyogenes MGAS2096 (serotype M12)
         spk  Streptococcus pyogenes MGAS9429 (serotype M12)
         spa  Streptococcus pyogenes MGAS10394 (serotype M6)
         spb  Streptococcus pyogenes MGAS6180 (serotype M28)
         stg  Streptococcus pyogenes MGAS15252 (serotype M59)
         stx  Streptococcus pyogenes MGAS1882 (serotype M59)
         soz  Streptococcus pyogenes NZ131 (serotype M49)
         stz  Streptococcus pyogenes Alab49 (serotype M53)
         spyh  Streptococcus pyogenes HSC5 (serotype M14)
         spn  Streptococcus pneumoniae TIGR4 (virulent serotype 4)
         spd  Streptococcus pneumoniae D39 (virulent serotype 2)
         spr  Streptococcus pneumoniae R6 (avirulent serotype 2)
         spw  Streptococcus pneumoniae CGSP14 (serotype 14)
         sjj  Streptococcus pneumoniae JJA (serotype 14)
         snv  Streptococcus pneumoniae INV200 (serotype 14)
         spx  Streptococcus pneumoniae G54 (serotype 19F)
         snt  Streptococcus pneumoniae Taiwan19F-14 (serotype 19F)
         snd  Streptococcus pneumoniae ST556 (serotype 19F)
         spnn  Streptococcus pneumoniae A026 (serotype 19F)
         sne  Streptococcus pneumoniae ATCC 700669 (serotype 23F ST81 lineage)
         spv  Streptococcus pneumoniae Hungary19A 6 (serotype 19A)
         snc  Streptococcus pneumoniae TCH8431/19A (serotype 19A)
         snm  Streptococcus pneumoniae 70585 (serotype 5)
         spp  Streptococcus pneumoniae P1031 (serotype 1)
         sni  Streptococcus pneumoniae INV104 (serotype 1)
         spng  Streptococcus pneumoniae gamPNI0373 (virulent serotype 1)
         snb  Streptococcus pneumoniae 670-6B (serotype 6B)
         snp  Streptococcus pneumoniae AP200 (serotype 11A)
         snx  Streptococcus pneumoniae OXC141 (serotype 3)
         snu  Streptococcus pneumoniae SPNA45 (serotype 3)
         spne  Streptococcus pneumoniae SPN034156 (serotype 3)
         spnu  Streptococcus pneumoniae SPN034183 (serotype 3)
         spnm  Streptococcus pneumoniae SPN994038 (serotype 3)
         spno  Streptococcus pneumoniae SPN994039 (serotype 3)
         sag  Streptococcus agalactiae 2603 (serotype V)
         san  Streptococcus agalactiae NEM316 (serotype III)
         sak  Streptococcus agalactiae A909 (serotype Ia)
         sgc  Streptococcus agalactiae GD201008-001 (serotype Ia)
         sags  Streptococcus agalactiae SA20
         sagl  Streptococcus agalactiae 2-22 (serotype Ib)
         sagm  Streptococcus agalactiae 09mas018883
         sagi  Streptococcus agalactiae ILRI005
         sagr  Streptococcus agalactiae ILRI112
         sagp  Streptococcus agalactiae 138P
         sagc  Streptococcus agalactiae 138spar
         sagt  Streptococcus agalactiae COH1
         sage  Streptococcus agalactiae NGBS061
         sagg  Streptococcus agalactiae NGBS572
         sagn  Streptococcus agalactiae CNCTC 10/84
         stc  Streptococcus thermophilus CNRZ1066
         stl  Streptococcus thermophilus LMG 18311
         ste  Streptococcus thermophilus LMD-9
         stn  Streptococcus thermophilus ND03
         stu  Streptococcus thermophilus JIM 8232
         stw  Streptococcus thermophilus MN-ZLW-002
         sthe  Streptococcus thermophilus ASCC 1275
         ssa  Streptococcus sanguinis
         ssk  Streptococcus suis D12 (serotype 9)
         srp  Streptococcus suis ST1 (serotype 1)
         ssut  Streptococcus suis TL13 (serotype 16)
         sub  Streptococcus uberis
         sdg  Streptococcus dysgalactiae subsp. equisimilis ATCC 12394
         sda  Streptococcus dysgalactiae subsp. equisimilis RE378
         sdc  Streptococcus dysgalactiae subsp. equisimilis AC-2713
         sdq  Streptococcus dysgalactiae subsp. equisimilis 167
         sor  Streptococcus oralis
         stk  Streptococcus parauberis
         ssr  Streptococcus salivarius CCHSS3
         stf  Streptococcus salivarius 57.I
         stj  Streptococcus salivarius JIM8777
         strs  Streptococcus salivarius NCTC 8618
         ssah  Streptococcus salivarius HSISS4
         std  Streptococcus pseudopneumoniae
         sig  Streptococcus sp. I-G2
         sip  Streptococcus sp. I-P16
         stv  Streptococcus sp. VT 162
         stra  Streptococcus sp. A12
         strn  Streptococcus sp. NPS 308
         ssob  Streptococcus sobrinus
         seqi  Streptococcus equinus
         ski  Streptococcus koreensis
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       Lactobacillus (101)
         lpl  Lactobacillus plantarum WCFS1
         lpj  Lactobacillus plantarum JDM1
         lpt  Lactobacillus plantarum ZJ316
         lps  Lactobacillus plantarum subsp. plantarum ST-III
         lpr  Lactobacillus plantarum subsp. plantarum P-8
         lpz  Lactobacillus plantarum 16
         lpb  Lactobacillus plantarum B21
         lsa  Lactobacillus sakei
         lsl  Lactobacillus salivarius UCC118
         lsi  Lactobacillus salivarius CECT 5713
         lsj  Lactobacillus salivarius JCM1046
         lbr  Lactobacillus brevis ATCC 367
         lbk  Lactobacillus brevis KB290
         lca  Lactobacillus paracasei ATCC 334
         lcz  Lactobacillus paracasei Zhang
         lcs  Lactobacillus paracasei BD-II
         lce  Lactobacillus paracasei LC2W
         lcl  Lactobacillus paracasei LOCK919
         lpq  Lactobacillus paracasei N1115
         lpi  Lactobacillus paracasei subsp. paracasei 8700:2
         lpap  Lactobacillus paracasei subsp. paracasei JCM 8130
         lcb  Lactobacillus casei BL23
         lcw  Lactobacillus casei W56
         lcx  Lactobacillus casei 12A
         lre  Lactobacillus reuteri DSM 20016
         lrf  Lactobacillus reuteri JCM 1112
         lru  Lactobacillus reuteri SD2112
         lrr  Lactobacillus reuteri TD1
         lfe  Lactobacillus fermentum IFO 3956
         lfr  Lactobacillus fermentum CECT 5716
         lff  Lactobacillus fermentum F-6
         lrh  Lactobacillus rhamnosus GG
         lrg  Lactobacillus rhamnosus GG
         lrl  Lactobacillus rhamnosus Lc 705
         lra  Lactobacillus rhamnosus ATCC 8530
         lro  Lactobacillus rhamnosus LOCK900
         lrc  Lactobacillus rhamnosus LOCK908
         lam  Lactobacillus amylovorus GRL 1112
         lai  Lactobacillus amylovorus 30SC
         lbh  Lactobacillus buchneri NRRL B-30929
         lbn  Lactobacillus buchneri CD034
         lke  Lactobacillus kefiranofaciens
         lho  Lactobacillus hokkaidonensis
         lmu  Lactobacillus mucosae
         lgn  Lactobacillus ginsenosidimutans
         lko  Lactobacillus koreensis
         lpx  Lactobacillus paraplantarum
         lor  Lactobacillus oris
         lpar  Lactobacillus parabuchneri
         lpd  Lactobacillus paracollinoides
         lcu  Lactobacillus curieae
         lct  Lactobacillus crustorum
         lcv  Lactobacillus curvatus
         lamy  Lactobacillus amylolyticus
         lagl  Lactobacillus agilis
         lzy  Lactobacillus zymae
         lpg  Lactobacillus pentosus
         laca  Lactobacillus acidipiscis
         lalw  Lactobacillus allii
         lali  Lactobacillus alimentarius
         lfm  Lactobacillus farciminis
         lng  Lactobacillus nagelii
         ldx  Lactobacillus dextrinicus
         lbm  Lactobacillus bombi
         lji  Lactobacillus jinshani
         lhw  Lactobacillus hordei
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       Pediococcus (6)
         ppe  Pediococcus pentosaceus ATCC 25745
         ppen  Pediococcus pentosaceus SL4
         paci  Pediococcus acidilactici
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       Enterococcus (23)
         efa  Enterococcus faecalis V583
         efl  Enterococcus faecalis 62
         efi  Enterococcus faecalis OG1RF
         efd  Enterococcus faecalis D32
         efs  Enterococcus faecalis Symbioflor 1
         efn  Enterococcus faecalis DENG1
         efq  Enterococcus faecalis ATCC 29212
         ene  Enterococcus faecalis 7L76
         efc  Enterococcus faecium Aus0004
         efau  Enterococcus faecium Aus0085
         efu  Enterococcus faecium DO
         efm  Enterococcus faecium ATCC 8459 = NRRL B-2354
         eft  Enterococcus faecium T110
         ehr  Enterococcus hirae
         ecas  Enterococcus casseliflavus
         emu  Enterococcus mundtii
         edu  Enterococcus durans
         ega  Enterococcus gallinarum
         ess  Enterococcus silesiacus
         eth  Enterococcus thailandicus
         egv  Enterococcus gilvus
         eav  Enterococcus avium
         esg  Enterococcus saigonensis
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       Melissococcus (2)
         mps  Melissococcus plutonius ATCC 35311
         mpx  Melissococcus plutonius DAT561
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       Tetragenococcus (4)
         thl  Tetragenococcus halophilus NBRC 12172
         tey  Tetragenococcus halophilus YJ1
         too  Tetragenococcus osmophilus
         tkr  Tetragenococcus koreensis
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       Vagococcus (5)
         vte  Vagococcus teuberi
         vpi  Vagococcus penaei
         vac  Vagococcus sp. CF-49
         vao  Vagococcus sp. MN-17
         vah  Vagococcus sp. HDW17A
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       Oenococcus (3)
         osi  Oenococcus sicerae
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       Leuconostoc (13)
         lki  Leuconostoc kimchii
         lec  Leuconostoc sp. C2
         llf  Leuconostoc lactis
         lgc  Leuconostoc garlicum
         lpse  Leuconostoc pseudomesenteroides
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       Weissella (11)
         wjo  Weissella jogaejeotgali
         wpa  Weissella paramesenteroides
         wso  Weissella soli
         whe  Weissella hellenica
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       Aerococcus (7)
         aui  Aerococcus urinaeequi
         asan  Aerococcus sanguinicola
         avs  Aerococcus viridans
         auh  Aerococcus urinaehominis
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       Abiotrophia (1)
         adc  Abiotrophia defectiva
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       unclassified Aerococcaceae (1)
         abae  Suicoccus acidiformans
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       Carnobacterium (6)
         crn  Carnobacterium sp. 17-4
         cml  Carnobacterium maltaromaticum
         caw  Carnobacterium inhibens
         carc  Carnobacterium sp. CP1
         carn  Carnobacterium sp. PL17GRE32
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       Marinilactibacillus (1)
         marr  Marinilactibacillus sp. 15R
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       Jeotgalibaca (5)
         jep  Jeotgalibaca sp. PTS2502
         jeh  Jeotgalibaca ciconiae
         jar  Jeotgalibaca arthritidis
         jpo  Jeotgalibaca porci
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       Dolosigranulum (1)
     Firmicutes - Clostridia (231)
       Clostridium (54)
         clj  Clostridium ljungdahlii
         cls  Clostridium sp. SY8519
         clb  Clostridium sp. BNL1100
         cpas  Clostridium pasteurianum BC1
         cah  Clostridium autoethanogenum
         csq  Clostridium scatologenes
         cace  Clostridium aceticum
         cck  Clostridium carboxidivorans
         cfm  Clostridium formicaceticum
         cdrk  Clostridium drakei
         cdy  Clostridium diolis
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       Alkaliphilus (2)
         amt  Alkaliphilus metalliredigens
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       Arthromitus (4)
       Geosporobacter (1)
         gfe  Geosporobacter ferrireducens
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       Hathewaya (1)
       Caloramator (1)
       Crassaminicella (1)
       Caloranaerobacter (1)
       Mageeibacillus (1)
       Fastidiosipila (1)
       Hungateiclostridium (4)
         ccl  Hungateiclostridium clariflavum
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       unclassified Hungateiclostridiaceae (1)
       Ruminiclostridium (1)
       Thermoclostridium (2)
       Pseudoclostridium (1)
       unclassified Ruminococcaceae (4)
       Flavonifractor (1)
         fpla  Flavonifractor plautii
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       Ethanoligenens (1)
       Ruminococcus (5)
       Faecalibacterium (2)
       Caproiciproducens (1)
       Butyrivibrio (3)
       Cellulosilyticum (2)
       Roseburia (3)
       Coprococcus (2)
       Blautia (6)
       Lachnoclostridium (3)
         lacy  Lachnoclostridium sp. YL32
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       Lacrimispora (2)
         cso  Clostridium cf. saccharolyticum K10
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       Anaerostipes (2)
       Herbinix (1)
       Anaerotignum (1)
       Lachnoanaerobaculum (1)
       Anaerobutyricum (1)
       Pseudobutyrivibrio (1)
       Anaerocolumna (1)
       Lachnospira (1)
       Mediterraneibacter (1)
       Enterocloster (1)
         cbol  Enterocloster bolteae
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       unclassified Lachnospiraceae (4)
       Clostridioides (5)
       Peptoclostridium (1)
       Acetoanaerobium (1)
       Filifactor (1)
       Paeniclostridium (1)
       Romboutsia (1)
       Peptacetobacter (1)
       unclassified Peptostreptococcaceae (1)
       Symbiobacterium (1)
       Syntrophomonas (1)
       Syntrophothermus (1)
       Syntrophocurvum (1)
       Desulfitobacterium (5)
         dhd  Desulfitobacterium hafniense DCB-2
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       Desulfotomaculum (4)
         dca  Desulfotomaculum nigrificans
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       Desulfofarcimen (1)
       Desulfofundulus (1)
         dku  Desulfofundulus kuznetsovii
   4/37
       Desulfallas (1)
         dgi  Desulfallas gibsoniae
   4/37
       Pelotomaculum (1)
         pth  Pelotomaculum thermopropionicum
   4/37
       Desulforudis (1)
       Thermincola (1)
       Syntrophobotulus (1)
       Desulfosporosinus (3)
         dor  Desulfosporosinus orientis
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       Dehalobacter (3)
         ded  Dehalobacter sp. DCA
         dec  Dehalobacter sp. CF
         drs  Dehalobacter restrictus
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       Heliobacterium (1)
       Heliorestis (1)
       Eubacterium (3)
       Acetobacterium (1)
       Oscillibacter (1)
       Dysosmobacter (1)
       Thermaerobacter (3)
         tmr  Thermaerobacter marianensis
         thef  Thermaerobacter sp. FW80
         thep  Thermaerobacter sp. PB12/4term
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       Sulfobacillus (3)
         say  Sulfobacillus acidophilus TPY
         sap  Sulfobacillus acidophilus DSM 10332
         sthr  Sulfobacillus thermotolerans
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       Carboxydocella (1)
       Christensenella (1)
       Intestinimonas (1)
       Mogibacterium (1)
       Aminipila (3)
       unclassified Clostridiales (4)
       Caldanaerobacter (1)
       Thermoanaerobacter (8)
       Carboxydothermus (1)
         chy  Carboxydothermus hydrogenoformans
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       Tepidanaerobacter (2)
       Moorella (3)
         mta  Moorella thermoacetica ATCC 39073
         mtho  Moorella thermoacetica DSM 521
         mthz  Moorella thermoacetica DSM 2955
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       Ammonifex (1)
       Thermacetogenium (1)
       Caldicellulosiruptor (9)
       Thermosediminibacter (1)
         toc  Thermosediminibacter oceani
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       Thermoanaerobacterium (4)
       Thermodesulfobium (2)
       Mahella (1)
       Natranaerobius (1)
       Halothermothrix (1)
       Halanaerobium (2)
       Halocella (1)
       Acetohalobium (1)
       Halobacteroides (1)
       Anoxybacter (1)
     Firmicutes - Others (46)
       Finegoldia (1)
       Anaerococcus (1)
       Parvimonas (1)
       Peptoniphilus (3)
       Gottschalkia (1)
       Sporanaerobacter (1)
         spoa  Sporanaerobacter sp. NJN-17
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       Veillonella (4)
       Megasphaera (3)
         mhw  Megasphaera hexanoica
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       Dialister (2)
       Selenomonas (5)
       Megamonas (2)
       Pelosinus (2)
       Methylomusa (1)
       Sporomusa (1)
         sted  Sporomusa termitida
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       Acidaminococcus (2)
       Phascolarctobacterium (1)
       Erysipelothrix (5)
         erh  Erysipelothrix rhusiopathiae Fujisawa
         ers  Erysipelothrix rhusiopathiae SY1027
         erl  Erysipelothrix larvae
         eri  Erysipelothrix sp. 15TAL0474
         erd  Erysipelothrix sp. HDW6C
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       Faecalitalea (1)
       Turicibacter (2)
       Faecalibaculum (1)
       Absiella (2)
       Erysipelatoclostridium (1)
       unclassified Erysipelotrichaceae (2)
       Limnochorda (1)
         lpil  Limnochorda pilosa
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     Tenericutes (160)
       Mycoplasma (99)
       Ureaplasma (4)
       Hepatoplasma (1)
       Phytoplasma (8)
       Acholeplasma (6)
         acl  Acholeplasma laidlawii
         abra  Acholeplasma brassicae
         apal  Acholeplasma palmae
         aoc  Acholeplasma oculi
         aaxa  Acholeplasma axanthum
         ahk  Acholeplasma hippikon
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       Mesoplasma (8)
       Entomoplasma (4)
       Spiroplasma (27)
       Izimaplasma (1)
       unclassified Tenericutes (2)
         tbm  Tenericutes bacterium MO-XQ
         tbz  Tenericutes bacterium MZ-XQ
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     Actinobacteria (752)
       Mycobacterium (73)
         mtu  Mycobacterium tuberculosis H37Rv
         mtv  Mycobacterium tuberculosis H37Rv
         mtc  Mycobacterium tuberculosis CDC1551
         mra  Mycobacterium tuberculosis H37Ra
         mtf  Mycobacterium tuberculosis F11
         mtb  Mycobacterium tuberculosis KZN 1435
         mtk  Mycobacterium tuberculosis KZN 4207
         mtz  Mycobacterium tuberculosis KZN 605
         mtg  Mycobacterium tuberculosis RGTB327
         mti  Mycobacterium tuberculosis RGTB423
         mte  Mycobacterium tuberculosis CCDC5079
         mtur  Mycobacterium tuberculosis CCDC5079
         mtl  Mycobacterium tuberculosis CCDC5180
         mto  Mycobacterium tuberculosis CTRI-2
         mtd  Mycobacterium tuberculosis UT205
         mtn  Mycobacterium tuberculosis Erdman = ATCC 35801
         mtj  Mycobacterium tuberculosis Beijing/NITR203
         mtub  Mycobacterium tuberculosis 7199-99
         mtuc  Mycobacterium tuberculosis CAS/NITR204
         mtue  Mycobacterium tuberculosis EAI5/NITR206
         mtx  Mycobacterium tuberculosis EAI5
         mtuh  Mycobacterium tuberculosis Haarlem/NITR202
         mtul  Mycobacterium tuberculosis Haarlem
         mtut  Mycobacterium tuberculosis BT1
         mtuu  Mycobacterium tuberculosis BT2
         mtq  Mycobacterium tuberculosis HKBS1
         mbo  Mycobacterium tuberculosis variant bovis AF2122/97
         mbb  Mycobacterium tuberculosis variant bovis BCG Pasteur 1173P2
         mbt  Mycobacterium tuberculosis variant bovis BCG Tokyo 172
         mbm  Mycobacterium tuberculosis variant bovis BCG Mexico
         mbk  Mycobacterium tuberculosis variant bovis BCG Korea 1168P
         mbx  Mycobacterium tuberculosis variant bovis BCG ATCC 35743
         maf  Mycobacterium tuberculosis variant africanum
         mmic  Mycobacterium tuberculosis variant microti
         mce  Mycobacterium canettii CIPT 140010059
         mcq  Mycobacterium canettii CIPT 140060008
         mcv  Mycobacterium canettii CIPT 140070008
         mcx  Mycobacterium canettii CIPT 140070010
         mcz  Mycobacterium canettii CIPT 140070017
         mpa  Mycobacterium avium subsp. paratuberculosis K-10
         mao  Mycobacterium avium subsp. paratuberculosis MAP4
         mavi  Mycobacterium avium subsp. paratuberculosis E1
         mavu  Mycobacterium avium subsp. paratuberculosis E93
         mav  Mycobacterium avium 104
         mit  Mycobacterium intracellulare MOTT-02
         mia  Mycobacterium intracellulare ATCC 13950
         mid  Mycobacterium intracellulare subsp. intracellulare
         myo  Mycobacterium intracellulare subsp. yongonense
         mir  Mycobacterium paraintracellulare
         mchi  Mycobacterium chimaera
         mmal  Mycobacterium marseillense
         mlp  Mycobacterium lepraemurium
         msa  Mycobacterium sp. JS623
         mul  Mycobacterium ulcerans
         mmc  Mycobacterium sp. MCS
         mkm  Mycobacterium sp. KMS
         mjl  Mycobacterium sp. JLS
         mmi  Mycobacterium marinum M
         mmae  Mycobacterium marinum E11
         mmm  Mycobacterium sp. MOTT36Y
         mli  Mycobacterium liflandii
         mkn  Mycobacterium kansasii ATCC 12478
         myv  Mycobacterium sp. VKM Ac-1817D
         mye  Mycobacterium sp. EPa45
         mhad  Mycobacterium haemophilum
         myn  Mycobacterium sp. NRRL B-3805
         mdx  Mycobacterium dioxanotrophicus
         mshg  Mycobacterium shigaense
         mfj  Mycobacterium florentinum
         mgro  Mycobacterium grossiae
         mxe  Mycobacterium xenopi
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       Mycolicibacterium (21)
         msm  Mycolicibacterium smegmatis MC2 155
         msg  Mycolicibacterium smegmatis MC2 155
         msb  Mycolicibacterium smegmatis MC2 155
         msn  Mycolicibacterium smegmatis INHR1
         msh  Mycolicibacterium smegmatis INHR2
         mva  Mycolicibacterium vanbaalenii
         mgi  Mycolicibacterium gilvum PYR-GCK
         msp  Mycolicibacterium gilvum Spyr1
         mcb  Mycolicibacterium chubuense
         mne  Mycolicibacterium neoaurum
         mgo  Mycolicibacterium goodii
         mft  Mycolicibacterium fortuitum
         mphl  Mycolicibacterium phlei
         mvq  Mycolicibacterium vaccae
         mll  Mycolicibacterium litorale
         mrh  Mycolicibacterium rhodesiae
         mthn  Mycolicibacterium thermoresistibile
         mhas  Mycolicibacterium hassiacum
         mdu  Mycolicibacterium duvalii
         mcht  Mycolicibacterium chitae
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       Mycobacteroides (9)
         mab  Mycobacteroides abscessus ATCC 19977
         mmv  Mycobacteroides abscessus subsp. massiliense GO 06
         mabb  Mycobacteroides abscessus subsp. bolletii 50594
         mabl  Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300
         mche  Mycobacteroides chelonae
         miz  Mycobacteroides immunogenum
         mste  Mycobacterium stephanolepidis
         msao  Mycobacteroides saopaulense
         msal  Mycobacteroides salmoniphilum
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       Mycolicibacter (3)
         mjd  Mycolicibacter sinensis
         mter  Mycolicibacter terrae
         mmin  Mycolicibacter minnesotensis
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       Hoyosella (1)
         asd  Hoyosella subflava
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       Mycolicibacillus (1)
         mkr  Mycolicibacillus koreensis
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       Corynebacterium (100)
         cgl  Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko)
         cgb  Corynebacterium glutamicum ATCC 13032 (Bielefeld)
         cgu  Corynebacterium glutamicum K051
         cgt  Corynebacterium glutamicum R
         cgs  Corynebacterium glutamicum SCgG1
         cgg  Corynebacterium glutamicum SCgG2
         cgm  Corynebacterium glutamicum MB001
         cgj  Corynebacterium glutamicum ATCC 21831
         cgq  Corynebacterium glutamicum AR1
         cgx  Corynebacterium glutamicum B253
         cef  Corynebacterium efficiens
         cdr  Corynebacterium diphtheriae HC03
         chn  Corynebacterium halotolerans
         ccn  Corynebacterium callunae
         cter  Corynebacterium terpenotabidum
         cmd  Corynebacterium maris
         caz  Corynebacterium argentoratense
         ccg  Corynebacterium casei
         cgy  Corynebacterium glyciniphilum
         cax  Corynebacterium atypicum
         cii  Corynebacterium imitans
         chm  Corynebacterium humireducens
         cmq  Corynebacterium marinum
         cmv  Corynebacterium mustelae
         cei  Corynebacterium epidermidicanis
         cted  Corynebacterium testudinoris
         cdx  Corynebacterium deserti
         csp  Corynebacterium simulans
         csta  Corynebacterium stationis
         ccjz  Corynebacterium crudilactis
         cpho  Corynebacterium phocae
         cfc  Corynebacterium flavescens
         cstr  Corynebacterium striatum
         caqu  Corynebacterium aquilae
         camg  Corynebacterium ammoniagenes
         cmin  Corynebacterium minutissimum
         cpeg  Corynebacterium pelargi
         cee  Corynebacterium endometrii
         csan  Corynebacterium sanguinis
         bfv  Brevibacterium flavum
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       Nocardia (10)
         nfa  Nocardia farcinica IFM 10152
         nfr  Nocardia farcinica NCTC11134
         ncy  Nocardia cyriacigeorgica
         nbr  Nocardia brasiliensis
         nno  Nocardia nova
         nsl  Nocardia mangyaensis
         nsr  Nocardia seriolae
         ntp  Nocardia terpenica
         noz  Nocardia sp. CS682
         nod  Nocardia otitidiscaviarum
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       Rhodococcus (21)
         rha  Rhodococcus jostii
         rer  Rhodococcus erythropolis PR4
         rey  Rhodococcus erythropolis CCM2595
         reb  Rhodococcus erythropolis BG43
         rop  Rhodococcus opacus B4
         roa  Rhodococcus opacus PD630
         req  Rhodococcus hoagii
         rpy  Rhodococcus pyridinivorans
         rhb  Rhodococcus sp. B7740
         rav  Rhodococcus aetherivorans
         rfa  Rhodococcus fascians
         rhw  Rhodococcus sp. WMMA185
         rhs  Rhodococcus sp. PBTS 2
         rrz  Rhodococcus ruber
         rhu  Rhodococcus sp. PBTS 1
         rqi  Rhodococcus qingshengii
         rhq  Rhodococcus sp. p52
         rhod  Rhodococcus sp. 008
         rrt  Rhodococcus rhodochrous
         rby  Rhodococcus biphenylivorans
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       Gordonia (11)
         gbr  Gordonia bronchialis
         gpo  Gordonia polyisoprenivorans
         gor  Gordonia sp. KTR9
         goq  Gordonia phthalatica
         gta  Gordonia terrae
         goc  Gordonia sp. YC-JH1
         git  Gordonia iterans
         gru  Gordonia rubripertincta
         gom  Gordonia insulae
         gav  Gordonia alkanivorans
         god  Gordonia sp. 135
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       Tsukamurella (2)
         tpr  Tsukamurella paurometabola
         tsm  Tsukamurella tyrosinosolvens
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       Segniliparus (1)
       Dietzia (5)
         dtm  Dietzia timorensis
         dit  Dietzia sp. oral taxon 368
         diz  Dietzia sp. JS16-p6b
         dpc  Dietzia psychralcaliphila
         dlu  Dietzia lutea
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       Lawsonella (1)
       Tomitella (1)
         toy  Tomitella sp. HY188
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       Streptomyces (71)
         sco  Streptomyces coelicolor
         sma  Streptomyces avermitilis
         sgr  Streptomyces griseus
         sgb  Streptomyces globisporus
         scb  Streptomyces scabiei
         ssx  Streptomyces sp. SirexAA-E
         svl  Streptomyces violaceusniger
         sct  Streptomyces cattleya NRRL 8057 = DSM 46488
         scy  Streptomyces cattleya NRRL 8057 = DSM 46488
         sfa  Streptomyces pratensis
         sbh  Streptomyces bingchenggensis
         shy  Streptomyces hygroscopicus subsp. jinggangensis 5008
         sho  Streptomyces hygroscopicus subsp. jinggangensis TL01
         sve  Streptomyces venezuelae
         sdv  Streptomyces davaonensis
         sals  Streptomyces albus DSM 41398
         strp  Streptomyces sp. PAMC 26508
         sfi  Streptomyces fulvissimus
         src  Streptomyces rapamycinicus
         salu  Streptomyces albulus NK660
         sall  Streptomyces albulus ZPM
         slv  Streptomyces lividans
         sgu  Streptomyces glaucescens
         svt  Streptomyces vietnamensis
         stre  Streptomyces sp. 769
         scw  Streptomyces cyaneogriseus
         slc  Streptomyces lydicus 103
         sxi  Streptomyces xiamenensis
         strm  Streptomyces sp. Mg1
         strc  Streptomyces sp. CNQ-509
         samb  Streptomyces ambofaciens
         spri  Streptomyces pristinaespiralis
         scz  Streptomyces sp. CFMR 7
         scx  Streptomyces sp. CdTB01
         srw  Streptomyces reticuli
         strf  Streptomyces sp. 4F
         sle  Streptomyces leeuwenhoekii
         srn  Streptomyces rubrolavendulae
         spav  Streptomyces parvulus
         strt  Streptomyces sp. SAT1
         sgs  Streptomyces griseochromogenes
         stsi  Streptomyces qaidamensis
         sls  Streptomyces lincolnensis
         snr  Streptomyces noursei
         splu  Streptomyces pluripotens
         strd  Streptomyces sp. CCM_MD2014
         snw  Streptomyces niveus
         sauo  Streptomyces autolyticus
         ssia  Streptomyces alfalfae
         svu  Streptomyces violaceoruber
         spun  Streptomyces fodineus
         smal  Streptomyces malaysiensis
         slau  Streptomyces laurentii
         slx  Streptomyces lavendulae subsp. lavendulae
         stro  Streptomyces sp. MOE7
         sfk  Streptomyces formicae
         snz  Streptomyces nigra
         sge  Streptomyces griseorubiginosus
         srj  Streptomyces rochei
         sky  Streptomyces koyangensis
         sdx  Streptomyces dengpaensis
         sgd  Streptomyces griseoviridis
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       Kitasatospora (4)
         ksk  Kitasatospora setae
         kau  Kitasatospora aureofaciens
         kit  Kitasatospora sp. MMS16-BH015
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       Streptacidiphilus (1)
         stri  Streptacidiphilus sp. DSM 106435
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       Tropheryma (2)
       Luteimicrobium (1)
         lxl  Luteimicrobium xylanilyticum
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       Leifsonia (3)
         lxy  Leifsonia xyli subsp. cynodontis DSM 46306
         leif  Leifsonia sp. PS1209
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       Clavibacter (5)
         cmi  Clavibacter michiganensis subsp. michiganensis
         cms  Clavibacter michiganensis subsp. sepedonicus
         cmc  Clavibacter michiganensis subsp. nebraskensis
         cmh  Clavibacter michiganensis subsp. insidiosus
         ccap  Clavibacter michiganensis subsp. capsici
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       Microbacterium (18)
         mts  Microbacterium testaceum
         mim  Microbacterium sp. CGR1
         mio  Microbacterium sp. No. 7
         mix  Microbacterium sp. XT11
         mip  Microbacterium sp. PAMC 28756
         mcw  Microbacterium chocolatum
         mpal  Microbacterium paludicola
         mih  Microbacterium sp. BH-3-3-3
         micr  Microbacterium sp. 1.5R
         maur  Microbacterium aurum
         mhos  Microbacterium hominis
         mfol  Microbacterium foliorum
         moo  Microbacterium oleivorans
         mlv  Microbacterium lemovicicum
         mwa  Microbacterium wangchenii
         mprt  Microbacterium protaetiae
         msed  Microbacterium sediminis
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       Rhodoluna (2)
         rla  Rhodoluna lacicola
         rpla  Candidatus Rhodoluna planktonica
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       Aquiluna (1)
         aqg  Aquiluna sp. 15G-AUS-rot
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       Rathayibacter (7)
         rry  Rathayibacter rathayi
         ria  Rathayibacter iranicus
         rfs  Rathayibacter festucae
         rte  Rathayibacter tanaceti
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       Curtobacterium (4)
         cum  Curtobacterium sp. MR_MD2014
         cub  Curtobacterium sp. BH-2-1-1
         cug  Curtobacterium sp. SGAir0471
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       Microterricola (1)
         mvd  Microterricola viridarii
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       Frondihabitans (1)
         frp  Frondihabitans sp. PAMC 28766
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       Agromyces (3)
         agy  Agromyces aureus
         agm  Agromyces sp. MF30-A
         agf  Agromyces protaetiae
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   5/37
       Cryobacterium (2)
         cart  Cryobacterium arcticum
         cry  Cryobacterium sp. LW097
   2/37
   3/37
       Cnuibacter (1)
         cphy  Cnuibacter physcomitrellae
   5/37
       Aurantimicrobium (3)
         aum  Aurantimicrobium sp. MWH-Mo1
   4/37
       Pontimonas (1)
       Microcella (1)
         malk  Microcella alkaliphila
   2/37
       Mycetocola (1)
         myl  Mycetocola sp. 449
   2/37
       Salinibacterium (3)
         salc  Salinibacterium sp. CGMCC 1.16371
         sala  Salinibacterium sp. UTAS2018
         sald  Salinibacterium sp. dk2585
   9/37
   3/37
  13/37
       Humibacter (2)
         hum  Humibacter sp. BT305
         huw  Humibacter sp. WJ7-1
   2/37
   5/37
       Gryllotalpicola (1)
       Protaetiibacter (1)
         lyd  Protaetiibacter intestinalis
   2/37
       Lysinimonas (1)
         lyk  Lysinimonas sp. KACC 19322
   2/37
       Plantibacter (1)
         plap  Plantibacter sp. PA-3-X8
   2/37
       Leucobacter (3)
         leu  Leucobacter sp. DSM 101948
         ltr  Leucobacter triazinivorans
         leb  Leucobacter sp. HDW9A
   3/37
   7/37
   2/37
       Agrococcus (1)
         agg  Agrococcus sp. SGAir0287
   2/37
       Marisediminicola (1)
         mant  Marisediminicola antarctica
   2/37
       Herbiconiux (1)
         hea  Herbiconiux sp. SALV-R1
  13/37
       Arthrobacter (18)
         art  Arthrobacter sp. FB24
         arr  Arthrobacter sp. Rue61a
         arm  Arthrobacter sp. PAMC 25486
         arl  Arthrobacter sp. LS16
         are  Arthrobacter sp. ERGS1:01
         aaq  Arthrobacter alpinus R3.8
         arw  Arthrobacter alpinus A3
         arh  Arthrobacter sp. Hiyo8
         ary  Arthrobacter sp. YC-RL1
         arz  Arthrobacter sp. ATCC 21022
         aru  Arthrobacter sp. U41
         arq  Arthrobacter sp. QXT-31
         arn  Arthrobacter sp. YN
         arx  Arthrobacter sp. ZXY-2
         acry  Arthrobacter crystallopoietes
         arth  Arthrobacter sp. PGP41
         artp  Arthrobacter sp. PAMC25564
         acit  Arthrobacter citreus
   2/37
   2/37
   2/37
   5/37
   3/37
   2/37
   3/37
   3/37
   5/37
   8/37
  11/37
   4/37
   8/37
   4/37
  15/37
   2/37
  18/37
   9/37
       Psychromicrobium (1)
         ari  Psychromicrobium lacuslunae
   5/37
       Paenarthrobacter (1)
         aau  Paenarthrobacter aurescens
   2/37
       Pseudarthrobacter (5)
         ach  Pseudarthrobacter chlorophenolicus
         apn  Pseudarthrobacter phenanthrenivorans
         psul  Pseudarthrobacter sulfonivorans
         psni  Pseudarthrobacter sp. NIBRBAC000502771
         psey  Pseudarthrobacter sp. YJ56
   3/37
  11/37
  14/37
  11/37
   8/37
       Glutamicibacter (4)
         aai  Glutamicibacter arilaitensis
         gar  Glutamicibacter halophytocola
         gcr  Glutamicibacter creatinolyticus
         glu  Glutamicibacter sp. ZJUTW
   2/37
   3/37
   2/37
  10/37
       Renibacterium (1)
         rsa  Renibacterium salmoninarum
   2/37
       Kocuria (6)
         krh  Kocuria rhizophila
         kpl  Kocuria palustris
         kfv  Kocuria flava
         kii  Kocuria indica
         krs  Kocuria rosea
         kod  Kocuria sp. KD4
   2/37
   9/37
   9/37
   5/37
  15/37
   5/37
       Micrococcus (2)
         mlu  Micrococcus luteus
         mick  Micrococcus sp. KBS0714
   2/37
   2/37
       Rothia (3)
       Sinomonas (1)
         satk  Sinomonas atrocyanea
  11/37
       Neomicrococcus (1)
         nae  Neomicrococcus aestuarii
  10/37
       Auritidibacter (1)
         aul  Auritidibacter sp. NML130574
   2/37
       Citricoccus (1)
         cig  Citricoccus sp. SGAir0453
  15/37
       Beutenbergia (1)
         bcv  Beutenbergia cavernae
   2/37
       Brachybacterium (7)
         brx  Brachybacterium sp. P6-10-X1
         brv  Brachybacterium sp. VR2415
         bgg  Brachybacterium ginsengisoli
         brz  Brachybacterium sp. VM2412
         bsau  Brachybacterium saurashtrense
         brr  Brachybacterium sp. SGAir0954
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
       Dermabacter (2)
       Jonesia (1)
         jde  Jonesia denitrificans
   2/37
       Kytococcus (1)
       Dermacoccus (2)
       Luteipulveratus (1)
       Xylanimonas (2)
         xce  Xylanimonas cellulosilytica
         xyl  Xylanimonas allomyrinae
   2/37
   9/37
       Isoptericola (2)
         iva  Isoptericola variabilis
         ido  Isoptericola dokdonensis
   2/37
   3/37
       Cellulosimicrobium (2)
         cet  Cellulosimicrobium sp. TH-20
         cceu  Cellulosimicrobium cellulans
   2/37
   2/37
       Xylanimicrobium (1)
         xya  Xylanimicrobium sp. FW10M-9
   2/37
       Sanguibacter (2)
         ske  Sanguibacter keddieii
         sanw  Sanguibacter sp. HDW7
   2/37
   2/37
       Cellulomonas (7)
         cfl  Cellulomonas flavigena
         cfi  Cellulomonas fimi
         cga  Cellulomonas gilvus
         cez  Cellulomonas sp. PSBB021
         celz  Cellulomonas shaoxiangyii
         cej  Cellulomonas sp. JZ18
         celh  Cellulomonas sp. H30R-01
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
       Oerskovia (1)
         oek  Oerskovia sp. KBS0722
   2/37
       Pseudactinotalea (1)
         psei  Pseudactinotalea sp. HY158
   2/37
       Intrasporangium (1)
         ica  Intrasporangium calvum
   9/37
       Arsenicicoccus (1)
         ars  Arsenicicoccus sp. oral taxon 190
   3/37
       Serinicoccus (2)
         serj  Serinicoccus hydrothermalis
         serw  Serinicoccus sp. W204
   2/37
   2/37
       Janibacter (3)
         jte  Janibacter indicus
         jli  Janibacter limosus
         jme  Janibacter melonis
   9/37
   9/37
   9/37
       Ornithinimicrobium (2)
         orn  Ornithinimicrobium sp. AMA3305
         orz  Ornithinimicrobium sp. H23M54
   2/37
   2/37
       Tetrasphaera (1)
       Phycicoccus (1)
         phw  Phycicoccus sp. HDW14
   4/37
       Brevibacterium (4)
         bly  Brevibacterium linens BS258
         blin  Brevibacterium aurantiacum
         bri  Brevibacterium sp. CS2
         blut  Brevibacterium luteolum
   5/37
   6/37
   3/37
   2/37
       Dermatophilus (1)
         dco  Dermatophilus congolensis
   2/37
       Georgenia (1)
         gez  Georgenia sp. Z294
   3/37
       Cutibacterium (14)
       Propionibacterium (5)
         paus  Propionibacterium australiense
   6/37
       Pseudopropionibacterium (1)
       Acidipropionibacterium (4)
       Microlunatus (3)
         mik  Microlunatus sp. KUDC0627
         micg  Microlunatus sp. Gsoil 973
   4/37
   3/37
       Tessaracoccus (4)
         tfl  Tessaracoccus flavus
         tfa  Tessaracoccus flavescens
         tes  Tessaracoccus aquimaris
         tez  Tessaracoccus sp. T2.5-30
   2/37
   2/37
   2/37
   2/37
       Raineyella (1)
         rain  Raineyella sp. CBA3103
  12/37
       Propioniciclava (1)
         prv  Propioniciclava sp. HDW11
   4/37
       Nocardioides (8)
         nca  Nocardioides sp. JS614
         ndk  Nocardioides dokdonensis
         nbe  Nocardioides baekrokdamisoli
  10/37
   6/37
   3/37
       Kribbella (1)
         kfl  Kribbella flavida
   2/37
       Pimelobacter (1)
         psim  Pimelobacter simplex
   8/37
       Aeromicrobium (4)
         aez  Aeromicrobium sp. 592
         aeb  Aeromicrobium sp. A1-2
   4/37
   4/37
       Micropruina (1)
         mgg  Micropruina glycogenica
   2/37
       Thermobifida (1)
       Nocardiopsis (3)
         nda  Nocardiopsis dassonvillei
         ngv  Nocardiopsis gilva
   4/37
   3/37
       Streptomonospora (1)
         strr  Streptomonospora sp. M2
   4/37
       Thermomonospora (1)
         tcu  Thermomonospora curvata
  11/37
       Actinomadura (1)
         actw  Actinomadura sp. WMMB499
  15/37
       Streptosporangium (1)
         sro  Streptosporangium roseum
   6/37
       Nonomuraea (2)
         noa  Nonomuraea sp. ATCC 55076
         now  Nonomuraea sp. WYY166
   9/37
  11/37
       Frankia (5)
         fra  Frankia casuarinae
         fre  Frankia sp. EAN1pec
         fri  Frankia inefficax
         fal  Frankia alni
         fsy  Candidatus Frankia datiscae
   2/37
   5/37
  10/37
   8/37
   9/37
       Acidothermus (1)
       Nakamurella (2)
         nml  Nakamurella multipartita
   5/37
       Geodermatophilus (1)
         gob  Geodermatophilus obscurus
   6/37
       Blastococcus (1)
         bsd  Blastococcus saxobsidens
   3/37
       Modestobacter (1)
         mmar  Modestobacter marinus
   8/37
       Kineococcus (1)
       Saccharopolyspora (3)
         sen  Saccharopolyspora erythraea
         sace  Saccharopolyspora sp. E2A
         sacg  Saccharopolyspora sp. ASAGF58
   6/37
   9/37
   5/37
       Saccharomonospora (2)
         svi  Saccharomonospora viridis
         sacc  Saccharomonospora sp. 31sw
   9/37
   3/37
       Amycolatopsis (11)
         amd  Amycolatopsis mediterranei U32
         amn  Amycolatopsis mediterranei S699
         amm  Amycolatopsis mediterranei S699
         amz  Amycolatopsis mediterranei RB
         aoi  Amycolatopsis keratiniphila
         aja  Amycolatopsis japonica
         amq  Amycolatopsis methanolica
         amyc  Amycolatopsis sp. AA4
         amyb  Amycolatopsis sp. BJA-103
         aab  Amycolatopsis albispora
         amyy  Amycolatopsis sp. YIM 10
  13/37
  13/37
  13/37
  13/37
  10/37
  13/37
  16/37
  15/37
  10/37
   8/37
  11/37
       Pseudonocardia (8)
         pdx  Pseudonocardia dioxanivorans
         psea  Pseudonocardia sp. AL041005-10
         psee  Pseudonocardia sp. EC080625-04
         pseh  Pseudonocardia sp. HH130629-09
         pseq  Pseudonocardia sp. EC080610-09
         pecq  Pseudonocardia sp EC080619-01
         phh  Pseudonocardia sp. HH130630-07
         paut  Pseudonocardia autotrophica
  13/37
   5/37
   8/37
   3/37
  12/37
  12/37
   5/37
   5/37
       Actinosynnema (2)
         apre  Actinosynnema pretiosum
         ami  Actinosynnema mirum
   7/37
   7/37
       Saccharothrix (2)
         ssyi  Saccharothrix syringae
   4/37
       Kutzneria (1)
         kal  Kutzneria albida
  10/37
       Kibdelosporangium (1)
         kphy  Kibdelosporangium phytohabitans
  10/37
       Lentzea (1)
         led  Lentzea guizhouensis
   4/37
       Actinoalloteichus (5)
         ahm  Actinoalloteichus hymeniacidonis
   3/37
       Alloactinosynnema (1)
         alo  Alloactinosynnema sp. L-07
   8/37
       Prauserella (1)
         pmad  Prauserella marina
  11/37
       Salinispora (2)
         stp  Salinispora tropica
         saq  Salinispora arenicola
   6/37
   7/37
       Micromonospora (6)
         mau  Micromonospora aurantiaca
         mil  Micromonospora sp. L5
         micb  Micromonospora sp. B006
         mtua  Micromonospora tulbaghiae
         mich  Micromonospora sp. HM134
         mtem  Micromonospora terminaliae
   5/37
   5/37
   6/37
   5/37
   7/37
   5/37
       Verrucosispora (1)
         vma  Verrucosispora maris
  10/37
       Actinoplanes (5)
         ams  Actinoplanes missouriensis
         afs  Actinoplanes friuliensis
   9/37
   7/37
       Plantactinospora (3)
         plk  Plantactinospora sp. KBS50
         plab  Plantactinospora sp. BC1
         plat  Plantactinospora sp. BB1
  10/37
   6/37
   6/37
       Phytohabitans (2)
         pfla  Phytohabitans flavus
         psuu  Phytohabitans suffuscus
  10/37
  12/37
       Catenulispora (1)
         cai  Catenulispora acidiphila
   7/37
       Stackebrandtia (1)
       Arcanobacterium (2)
       Mobiluncus (1)
       Trueperella (3)
         tbw  Trueperella bialowiezensis
   2/37
       Actinotignum (2)
       Schaalia (2)
       Actinomyces (11)
         ard  Actinomyces radicidentis
         ahw  Actinomyces howellii
   2/37
   2/37
       Flaviflexus (2)
         fsl  Flaviflexus salsibiostraticola
         flh  Flaviflexus sp. H23T48
   2/37
   2/37
       Bifidobacterium (56)
       Gardnerella (3)
       Scardovia (1)
       Parascardovia (1)
       Thermobispora (1)
       Actinopolyspora (1)
         aey  Actinopolyspora erythraea
   5/37
       Planktophila (6)
       Nanopelagicus (3)
       Epidermidibacterium (1)
         eke  Epidermidibacterium keratini
   2/37
       unclassified Actinobacteria (1)
       Rubrobacter (3)
         rxy  Rubrobacter xylanophilus
         rrd  Rubrobacter radiotolerans
         rub  Rubrobacter sp. SCSIO 52909
   5/37
   5/37
   5/37
       Baekduia (1)
         bsol  Baekduia soli
   3/37
       Conexibacter (1)
         cwo  Conexibacter woesei
   8/37
       Acidimicrobium (1)
       Ilumatobacter (1)
         aym  Ilumatobacter coccineus
   4/37
       Cryptobacterium (1)
       Slackia (1)
       Eggerthella (2)
       Gordonibacter (1)
         gpa  Gordonibacter pamelaeae
   3/37
       Adlercreutzia (1)
       Denitrobacterium (1)
       Atopobium (1)
       Olsenella (2)
       Parolsenella (1)
       Coriobacterium (1)
       Collinsella (1)
       unclassified Coriobacteriaceae (1)
       Egibacter (1)
         erz  Egibacter rhizosphaerae
   6/37
       Euzebya (1)
         euz  Euzebya sp. DY32-46
   7/37
     Cyanobacteria (128)
       Synechocystis (8)
       Synechococcus (23)
       Thermosynechococcus (4)
       Cyanobium (2)
       Dactylococcopsis (1)
       Chamaesiphon (1)
       Leptolyngbya (4)
       Halomicronema (1)
       Pseudanabaena (2)
       Prochlorococcus (14)
       Acaryochloris (1)
       Thermoleptolyngbya (1)
       Gloeocapsa (1)
       Geminocystis (2)
       Chondrocystis (1)
       Microcystis (4)
       Cyanobacterium (3)
       Halothece (1)
       Euhalothece (1)
       Atelocyanobacterium (1)
       Crocosphaera (2)
       Rippkaea (2)
       Gloeothece (2)
       Cyanothece (1)
       Trichodesmium (1)
       Microcoleus (1)
       Arthrospira (1)
       Planktothrix (1)
       Oxynema (1)
       Limnospira (1)
       Geitlerinema (1)
       Oscillatoria (2)
       Moorea (1)
       Crinalium (1)
       Gloeobacter (2)
       Nostoc (8)
       Trichormus (2)
       Anabaena (4)
       Cylindrospermum (1)
       Calothrix (3)
       Rivularia (1)
       Fischerella (1)
       Nodularia (1)
       Dolichospermum (2)
         dfs  Dolichospermum flos-aquae
   2/37
       Tolypothrix (1)
       unclassified Nostocales (1)
       Chroococcidiopsis (1)
       Pleurocapsa (1)
       Stanieria (2)
       unclassified Cyanobacteria (2)
       unclassified Melainabacteria (1)
     Chloroflexi (31)
       Dehalococcoides (12)
       Dehalogenimonas (3)
       Roseiflexus (2)
         rrs  Roseiflexus sp. RS-1
         rca  Roseiflexus castenholzii
   7/37
   7/37
       Chloroflexus (3)
         cau  Chloroflexus aurantiacus
         chl  Chloroflexus aurantiacus Y-400-fl
         cag  Chloroflexus aggregans
   8/37
   8/37
   7/37
       Herpetosiphon (1)
         hau  Herpetosiphon aurantiacus
   2/37
       Thermomicrobium (1)
         tro  Thermomicrobium roseum
   7/37
       Sphaerobacterineae (1)
         sti  Sphaerobacter thermophilus
   2/37
       Anaerolinea (1)
       Brevefilum (1)
       Pelolinea (1)
       unclassified Anaerolineaceae (1)
       Caldilinea (1)
         cap  Caldilinea aerophila
   6/37
       Promineofilum (1)
         pbf  Candidatus Promineofilum breve
   2/37
       unclassified Ktedonobacterales (1)
         kbs  Ktedonobacterales bacterium SCAWS-G2
   8/37
       Tepidiforma (1)
     Deinococcus-Thermus (33)
       Deinococcus (16)
         dra  Deinococcus radiodurans
         dge  Deinococcus geothermalis
         ddr  Deinococcus deserti
         dmr  Deinococcus maricopensis
         dpt  Deinococcus proteolyticus
         dgo  Deinococcus gobiensis
         dpd  Deinococcus peraridilitoris
         dch  Deinococcus soli
         dab  Deinococcus actinosclerus
         dpu  Deinococcus puniceus
         dez  Deinococcus irradiatisoli
         dwu  Deinococcus wulumuqiensis
         dfc  Deinococcus ficus
         dein  Deinococcus sp. AJ005
         dga  Deinococcus grandis
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   3/37
   2/37
       Truepera (1)
         tra  Truepera radiovictrix
   2/37
       Thermus (10)
         tth  Thermus thermophilus HB27
         ttj  Thermus thermophilus HB8
         tts  Thermus thermophilus SG0.5JP17-16
         ttl  Thermus thermophilus JL-18
         tsc  Thermus scotoductus
         thc  Thermus sp. CCB_US3_UF1
         tos  Thermus oshimai
         taq  Thermus aquaticus
         tpar  Thermus parvatiensis
         tbc  Thermus brockianus
   2/37
   8/37
   2/37
   9/37
   7/37
  10/37
   7/37
   2/37
   2/37
  10/37
       Meiothermus (4)
         mrb  Meiothermus ruber DSM 1279
         mre  Meiothermus ruber DSM 1279
         msv  Meiothermus silvanus
         mtai  Meiothermus taiwanensis
   2/37
   2/37
   2/37
   2/37
       Oceanithermus (1)
       Marinithermus (1)
         mhd  Marinithermus hydrothermalis
   2/37
     Other Terrabacteria group (3)
       Chthonomonas (1)
       Fimbriimonas (1)
         fgi  Fimbriimonas ginsengisoli
   2/37
       Thermobaculum (1)
         ttr  Thermobaculum terrenum
   2/37
     Chlamydiae (120)
       Chlamydia (114)
       Protochlamydia (2)
       Parachlamydia (1)
       Neochlamydia (1)
       Waddlia (1)
       Simkania (1)
 
 
 
 
 
 
     Verrucomicrobia (14)
       Opitutus (1)
         ote  Opitutus terrae
   2/37
       Lacunisphaera (1)
         obg  Lacunisphaera limnophila
   2/37
       Nibricoccus (1)
         vbh  Nibricoccus aquaticus HZ-65
   2/37
       unclassified Opitutaceae (1)
         obt  Opitutaceae bacterium TAV5
   2/37
       Coraliomargarita (1)
       Akkermansia (2)
       Roseimicrobium (1)
         roo  Roseimicrobium sp. ORNL1
   2/37
       Luteolibacter (1)
         luo  Luteolibacter sp. G-1-1-1
   2/37
       Xiphinematobacter (1)
       Methylacidiphilum (2)
       unclassified Verrucomicrobia (2)
         vba  Verrucomicrobia bacterium IMCC26134
         vbs  Verrucomicrobia bacterium S94
   2/37
   4/37
     Planctomycetes (31)
       Rhodopirellula (1)
       Pirellula (2)
       Roseimaritima (1)
       Mariniblastus (1)
       Thermogutta (1)
       Lacipirellula (1)
       Planctopirus (2)
       Rubinisphaera (1)
       Planctomyces (2)
       Fuerstia (1)
       Gimesia (2)
       Bremerella (1)
       Gemmata (3)
         ges  Gemmata sp. SH-PL17
         gog  Gemmata obscuriglobus
         gms  Gemmata massiliana
   3/37
   3/37
   3/37
       Tuwongella (1)
       Limnoglobus (1)
         lrs  Limnoglobus roseus
   2/37
       Isosphaera (1)
       Singulisphaera (1)
       Paludisphaera (1)
         pbor  Paludisphaera borealis
   4/37
       Aquisphaera (1)
         agv  Aquisphaera giovannonii
   3/37
       Kuenenia (1)
       Phycisphaera (1)
       Sedimentisphaera (2)
       Limihaloglobus (1)
       Anaerohalosphaera (1)
     Kiritimatiellaeota (1)
       Kiritimatiella (1)
 
     Lentisphaerae (1)
       unclassified Victivallales (1)
 
     Spirochaetes (86)
       Borreliella (19)
       Borrelia (11)
       Treponema (23)
         tpi  Treponema primitia
   6/37
       Sediminispirochaeta (1)
         ssm  Sediminispirochaeta smaragdinae
   3/37
       Spirochaeta (4)
       Sphaerochaeta (3)
       Salinispira (1)
       Oceanispirochaeta (1)
       Leptospira (13)
         laj  Leptospira tipperaryensis
   2/37
       Turneriella (1)
       Brachyspira (9)
     Acidobacteria (13)
       Koribacter (1)
         aba  Candidatus Koribacter versatilis
   2/37
       Acidobacterium (1)
       Granulicella (3)
         acm  Granulicella tundricola
         gma  Granulicella mallensis
         grw  Granulicella sp. WH15
   6/37
   3/37
   6/37
       Terriglobus (3)
         tsa  Terriglobus saanensis
         trs  Terriglobus roseus
         talb  Terriglobus albidus
   3/37
   4/37
   4/37
       Acidisarcina (1)
       Edaphobacter (1)
       Solibacter (1)
       Chloracidobacterium (1)
       Luteitalea (1)
         abac  Luteitalea pratensis
   2/37
     Elusimicrobia (4)
       Elusimicrobium (1)
       Endomicrobium (3)
 
 
     Fusobacteria (24)
       Fusobacterium (13)
       Ilyobacter (1)
       Leptotrichia (7)
         lgo  Leptotrichia goodfellowii
   2/37
       Sebaldella (1)
         str  Sebaldella termitidis
   3/37
       Streptobacillus (1)
       Sneathia (1)
     Synergistetes (6)
       Thermanaerovibrio (1)
       Aminobacterium (1)
         aco  Aminobacterium colombiense
   2/37
       Thermovirga (1)
       Anaerobaculum (1)
       Fretibacterium (1)
       Cloacibacillus (1)
         cpor  Cloacibacillus porcorum
   2/37
     Fibrobacteres (2)
       Fibrobacter (2)
 
     Gemmatimonadetes (3)
       Gemmatimonas (2)
         gau  Gemmatimonas aurantiaca
         gph  Gemmatimonas phototrophica
   2/37
   2/37
       Gemmatirosa (1)
         gba  Gemmatirosa kalamazoonesis
   2/37
     Bacteroidetes (360)
       Bacteroides (20)
         bsa  Bacteroides salanitronis
         bdo  Bacteroides dorei HS1_L_1_B_010
         bdh  Bacteroides dorei HS1_L_3_B_079
   2/37
   2/37
   2/37
       Porphyromonas (6)
       Fermentimonas (1)
         pbt  Fermentimonas caenicola
   2/37
       Petrimonas (2)
         pmuc  Petrimonas mucosa
         pet  Petrimonas sp. IBARAKI
   2/37
   2/37
       Paludibacter (1)
       Parabacteroides (2)
       Tannerella (2)
       Muribaculum (1)
       Duncaniella (1)
       Barnesiella (1)
       Proteiniphilum (1)
         psac  Proteiniphilum saccharofermentans
   2/37
       Dysgonomonas (1)
         dys  Dysgonomonas sp. HDW5A
   2/37
       Odoribacter (1)
       Butyricimonas (1)
       Azobacteroides (1)
       Prevotella (10)
       Alloprevotella (1)
       Alistipes (6)
       Mucinivorans (1)
       unclassified Bacteroidales (1)
       Draconibacterium (2)
       Salinivirga (1)
       Alkalitalea (1)
       Labilibaculum (1)
       Salinibacter (2)
       Rhodothermus (2)
         rmr  Rhodothermus marinus DSM 4252
         rmg  Rhodothermus marinus SG0.5JP17-172
   2/37
   2/37
       unclassified Rhodothermaceae (1)
       Chitinophaga (4)
         cbae  Chitinophaga caeni
         chit  Chitinophaga sp. XS-30
   5/37
   2/37
       Niastella (1)
         nko  Niastella koreensis
   3/37
       Niabella (2)
       Flavisolibacter (2)
         fla  Flavisolibacter tropicus
         fgg  Flavisolibacter ginsenosidimutans
   3/37
   2/37
       Arachidicoccus (4)
       Filimonas (1)
       Pseudoflavitalea (1)
         pseg  Paraflavitalea soli
   3/37
       Panacibacter (1)
         pgin  Panacibacter ginsenosidivorans
   2/37
       Pseudobacter (1)
         pgo  Pseudobacter ginsenosidimutans
   3/37
       Flavihumibacter (1)
       Haliscomenobacter (1)
       Saprospira (1)
       Pedobacter (7)
       Pseudopedobacter (1)
         psn  Pseudopedobacter saltans
   2/37
       Sphingobacterium (9)
         sht  Sphingobacterium sp. ML3W
         sdj  Sphingobacterium daejeonense
   7/37
   2/37
       Solitalea (1)
       Mucilaginibacter (8)
         mup  Mucilaginibacter sp. PAMC 26640
         muc  Mucilaginibacter xinganensis
         mgot  Mucilaginibacter gotjawali
         muh  Mucilaginibacter sp. HYN0043
         mgin  Mucilaginibacter ginsenosidivorans
         mgk  Mucilaginibacter ginsenosidivorax
         mrub  Mucilaginibacter rubeus
         mgos  Mucilaginibacter gossypii
   5/37
   2/37
   2/37
   3/37
   2/37
   3/37
   3/37
   3/37
       Anseongella (1)
         agd  Anseongella ginsenosidimutans
   2/37
       Olivibacter (1)
         oli  Olivibacter sp. LS-1
   3/37
       unclassified Sphingobacteriaceae (1)
       Cyclobacterium (2)
         camu  Cyclobacterium amurskyense
   2/37
       Belliella (1)
       Echinicola (3)
         est  Echinicola strongylocentroti
   2/37
       Algoriphagus (1)
       Cytophaga (1)
       Dyadobacter (1)
         dfe  Dyadobacter fermentans
   2/37
       Spirosoma (6)
         sli  Spirosoma linguale
         srd  Spirosoma radiotolerans
         smon  Spirosoma montaniterrae
         spib  Spirosoma sp. BT328
   2/37
   2/37
   2/37
   3/37
       Leadbetterella (1)
       Runella (3)
         rsi  Runella slithyformis
         run  Runella sp. HYN0085
         rup  Runella sp. SP2
   2/37
   2/37
   2/37
       Emticicia (1)
         eol  Emticicia oligotrophica
   2/37
       Fibrella (2)
         fae  Fibrella aestuarina
         fib  Fibrella sp. ES10-3-2-2
   2/37
   2/37
       Allopseudarcicella (1)
       Arcticibacterium (1)
       Rhodocytophaga (1)
         rhoz  Rhodocytophaga sp. 172606-1
   3/37
       Flexibacter (1)
       Hymenobacter (10)
         hsw  Hymenobacter swuensis
         hyg  Hymenobacter sedentarius
         hyp  Hymenobacter sp. PAMC 26554
         hyz  Hymenobacter sp. PAMC 26628
         hyj  Hymenobacter jejuensis
   3/37
   3/37
   2/37
   2/37
   3/37
       Pontibacter (2)
         pko  Pontibacter korlensis
   4/37
       Rufibacter (3)
         ruf  Rufibacter sp. DG31D
         rud  Rufibacter sp. DG15C
   3/37
   3/37
       Nibribacter (1)
         nib  Nibribacter sp. BT10
   3/37
       Marivirga (1)
         mtt  Marivirga tractuosa
   3/37
       Flammeovirga (2)
       Fabibacter (1)
         fpf  Fabibacter pacificus
   2/37
       unclassified Flammeovirgaceae (1)
         fbt  Flammeovirgaceae bacterium 311
   2/37
       Amoebophilus (1)
       Cardinium (3)
       Chryseolinea (1)
         chk  Chryseolinea soli
   5/37
       Gramella (4)
         gfo  Gramella forsetii
         gfl  Gramella flava
         grs  Gramella fulva
   2/37
   3/37
   3/37
       Flavobacterium (25)
         ffa  Flavobacterium faecale
         fse  Flavobacterium sediminis
   2/37
   7/37
       Capnocytophaga (13)
       Robiginitalea (1)
       Zunongwangia (1)
       Croceibacter (1)
       Riemerella (6)
       Maribacter (5)
         marm  Maribacter sp. 1_2014MBL_MicDiv
         marb  Maribacter cobaltidurans
   3/37
   3/37
       Cellulophaga (5)
       Weeksella (1)
       Dokdonia (4)
       Lacinutrix (3)
       Zobellia (1)
         zga  Zobellia galactanivorans
   2/37
       Muricauda (3)
       Aequorivita (2)
       Ornithobacterium (2)
       Psychroflexus (1)
       Nonlabens (5)
         ndo  Nonlabens dokdonensis
   2/37
       Polaribacter (5)
         pom  Polaribacter sp. MED152
         prn  Polaribacter reichenbachii
   2/37
   3/37
       Elizabethkingia (9)
       Myroides (4)
       Chryseobacterium (15)
         chry  Chryseobacterium sp. T16E-39
   4/37
       Winogradskyella (2)
       Siansivirga (1)
       Algibacter (1)
       Sediminicola (1)
       Tenacibaculum (5)
         tmp  Tenacibaculum mesophilum
   2/37
       Lutibacter (1)
       Urechidicola (1)
       Wenyingzhuangia (1)
       Formosa (3)
       Salegentibacter (1)
       Seonamhaeicola (1)
       Arenibacter (1)
         aalg  Arenibacter algicola
   3/37
       Olleya (2)
       Flavivirga (1)
         fek  Flavivirga eckloniae
   2/37
       Tamlana (1)
       Aureitalea (1)
       Spongiibacterium (1)
       Kordia (2)
       Mariniflexile (1)
       Aquimarina (3)
       Euzebyella (1)
       Cloacibacterium (1)
       Muriicola (1)
       Psychroserpens (1)
       Antarcticibacterium (2)
         afla  Antarcticibacterium flavum
         anp  Antarcticibacterium sp. PAMC 28998
   2/37
   2/37
       Empedobacter (1)
       Oceanihabitans (1)
         oci  Oceanihabitans sp. IOP_32
   2/37
       Bergeyella (1)
       Marinirhabdus (1)
       Apibacter (1)
       Mesoflavibacter (1)
       Galbibacter (1)
       unclassified Flavobacteriaceae (3)
       Sulcia (9)
       Blattabacterium (9)
       Fluviicola (2)
       Owenweeksia (1)
       Ichthyobacterium (1)
       Walczuchella (1)
       Uzinura (1)
       unclassified Bacteroidetes (1)
     Chlorobi (17)
       Chlorobaculum (3)
       Chlorobium (5)
       Pelodictyon (2)
       Prosthecochloris (4)
       Chloroherpeton (1)
       Ignavibacterium (1)
         ial  Ignavibacterium album
   2/37
       Melioribacter (1)
     Balneolaeota (1)
       Cyclonatronum (1)
 
     Cloacimonetes (1)
       Cloacimonas (1)
 
     Aquificae (14)
       Aquifex (1)
       Hydrogenobaculum (3)
       Hydrogenobacter (2)
       Thermocrinis (2)
       Sulfurihydrogenibium (2)
       Persephonella (1)
       Thermosulfidibacter (1)
       Thermovibrio (1)
       Desulfurobacterium (1)
 
 
 
 
 
 
 
 
 
     Thermotogae (32)
       Thermotoga (13)
       Pseudothermotoga (3)
       Thermosipho (4)
       Fervidobacterium (3)
       Petrotoga (1)
       Marinitoga (2)
       Defluviitoga (1)
       Kosmotoga (2)
       Mesotoga (2)
       Athalassotoga (1)
 
 
 
 
 
 
 
 
 
 
     Coprothermobacterota (1)
       Coprothermobacter (1)
 
     Caldiserica (1)
       Caldisericum (1)
 
     Chrysiogenetes (1)
       Desulfurispirillum (1)
 
     Deferribacteres (5)
       Deferribacter (1)
       Denitrovibrio (1)
       Calditerrivibrio (1)
       Flexistipes (1)
       Geovibrio (1)
 
 
 
 
 
     Calditrichaeota (1)
       Caldithrix (1)
 
     Dictyoglomi (2)
       Dictyoglomus (2)
 
     Nitrospirae (9)
       Thermodesulfovibrio (1)
       Nitrospira (4)
         nde  Nitrospira defluvii
         nmv  Nitrospira moscoviensis
         nio  Candidatus Nitrospira inopinata
         nja  Nitrospira japonica
   5/37
   3/37
   2/37
   2/37
       Leptospirillum (4)
     Thermodesulfobacteria (7)
       Thermodesulfatator (1)
       Thermodesulfobacterium (3)
       Caldimicrobium (1)
       Thermosulfuriphilus (1)
       Thermosulfurimonas (1)
 
 
 
 
 
     Saccharibacteria (4)
       Saccharimonas (4)
 
     Peregrinibacteria (1)
       Peribacter (1)
 
     Bipolaricaulota (2)
       Bipolaricaulis (2)
 
     Other (4)
       Vampirococcus (1)
       Methylomirabilis (1)
       Chazhemtobacterium (1)
       Babela (1)
 
 
 
 
     unclassified Bacteria (11)
       srg  Candidate division SR1 bacterium Aalborg_AAW-1
   2/37
 
   Archaea (326)
     Euryarchaeota (226)
       Methanocaldococcus (6)
       Methanotorris (1)
       Methanococcus (11)
       Methanothermococcus (1)
       Methanofervidicoccus (1)
       Methanothermobacter (8)
       Methanosphaera (2)
       Methanobrevibacter (6)
       Methanobacterium (10)
       Methanothermus (1)
       Methanopyrus (1)
       Archaeoglobus (5)
       Ferroglobus (1)
       Geoglobus (2)
       Thermoplasma (2)
       Picrophilus (1)
       Ferroplasma (2)
       Cuniculiplasma (1)
       unclassified Thermoplasmatales (1)
       Methanomethylophilus (1)
       Methanomassiliicoccus (1)
       Methanoplasma (1)
       unclassified Thermoplasmata (1)
       Aciduliprofundum (2)
       Pyrococcus (8)
       Thermococcus (27)
       Palaeococcus (1)
       Methanosarcina (23)
       Methanococcoides (2)
       Methanohalophilus (2)
       Methanohalobium (1)
       Methanosalsum (1)
       Methanolobus (2)
       Methanomethylovorans (1)
       Methanosaeta (3)
       Methanospirillum (1)
       Methanocorpusculum (1)
       Methanoculleus (3)
       Methanolacinia (1)
       Methanoregula (2)
       Methanosphaerula (1)
       Methanocella (3)
       Halobacterium (4)
         hdl  Halobacterium sp. DL1
         hhb  Halobacterium hubeiense
   5/37
   5/37
       Halalkalicoccus (1)
         hje  Halalkalicoccus jeotgali
   3/37
       Halodesulfurarchaeum (2)
         halh  Halodesulfurarchaeum formicicum HTSR1
         hhsr  Haloarchaeon HSR6
   2/37
   5/37
       Halanaeroarchaeum (2)
       Salarchaeum (1)
       Halarchaeum (1)
       Haloarcula (6)
         hhi  Haloarcula hispanica ATCC 33960
         hhn  Haloarcula hispanica N601
         hab  Haloarcula sp. CBA1115
         hta  Haloarcula taiwanensis
         halj  Haloarcula sp. JP-L23
   2/37
   2/37
   2/37
   2/37
   2/37
       Natronomonas (2)
       Halorhabdus (3)
         hti  Halorhabdus tiamatea
   2/37
       Halomicrobium (3)
       Halorientalis (1)
         hali  Halorientalis sp. IM1011
   3/37
       Halapricum (1)
         hsn  Halapricum salinum
   2/37
       unclassified Haloarculaceae (1)
       Haloquadratum (2)
       Haloferax (4)
         hvo  Haloferax volcanii
         hme  Haloferax mediterranei
         hgi  Haloferax gibbonsii
         hale  Haloferax alexandrinus
   2/37
   5/37
   2/37
   2/37
       Halogeometricum (1)
       Haloplanus (4)
         haq  Haloplanus sp. CBA1112
         haj  Haloplanus sp. CBA1113
         haer  Haloplanus aerogenes
   3/37
   3/37
   2/37
       Halobellus (1)
         hlm  Halobellus limi
   8/37
       Haloprofundus (1)
       Halorubrum (5)
         hla  Halorubrum lacusprofundi
         hezz  Halorubrum ezzemoulense
   2/37
   2/37
       Salinigranum (1)
         srub  Salinigranum rubrum
   5/37
       Halohasta (1)
         hae  Halohasta litchfieldiae
   2/37
       Halolamina (1)
       Halobonum (1)
       Halalkaliarchaeum (1)
       unclassified Haloferacales (1)
       Haloterrigena (3)
         htu  Haloterrigena turkmenica
         hda  Haloterrigena daqingensis
         hjt  Haloterrigena jeotgali
   2/37
   2/37
   2/37
       Natrialba (1)
         nmg  Natrialba magadii
   2/37
       Halopiger (1)
         hxa  Halopiger xanaduensis
   2/37
       Natrinema (4)
         npe  Natrinema pellirubrum
         nvr  Natrinema versiforme
         npl  Natrinema pallidum
   2/37
   2/37
   2/37
       Natronobacterium (1)
       Halovivax (1)
         hru  Halovivax ruber
   2/37
       Natronococcus (1)
         nou  Natronococcus occultus
   2/37
       Salinarchaeum (1)
         sali  Salinarchaeum sp. Harcht-Bsk1
   2/37
       Halostagnicola (1)
         hlr  Halostagnicola larsenii
   5/37
       Halobiforma (1)
       Natronolimnobius (3)
         naj  Natronolimnobius aegyptiacus
   8/37
       Natronorubrum (2)
         nas  Natronorubrum aibiense
   2/37
       Natrialbaceae (1)
       unclassified Nanohaloarchaea (1)
     Crenarchaeota (71)
       Aeropyrum (2)
         ape  Aeropyrum pernix
         acj  Aeropyrum camini
   2/37
   2/37
       Staphylothermus (2)
       Ignicoccus (2)
       Desulfurococcus (3)
       Thermosphaera (1)
       Ignisphaera (1)
       Thermogladius (1)
       Hyperthermus (1)
       Pyrolobus (1)
       Pyrodictium (1)
       Sulfurisphaera (2)
         sto  Sulfurisphaera tokodaii
         soh  Sulfurisphaera ohwakuensis
   3/37
   2/37
       Saccharolobus (5)
         sso  Saccharolobus solfataricus P2
   2/37
       Sulfolobus (15)
         sai  Sulfolobus acidocaldarius DSM 639
         sacn  Sulfolobus acidocaldarius N8
         sacr  Sulfolobus acidocaldarius Ron12/I
         sacs  Sulfolobus acidocaldarius SUSAZ
         sis  Sulfolobus islandicus L.S.2.15
         sia  Sulfolobus islandicus M.14.25
         sim  Sulfolobus islandicus M.16.27
         sid  Sulfolobus islandicus M.16.4
         siy  Sulfolobus islandicus Y.G.57.14
         sin  Sulfolobus islandicus Y.N.15.51
         sii  Sulfolobus islandicus L.D.8.5
         sih  Sulfolobus islandicus HVE10/4
         sir  Sulfolobus islandicus REY15A
         sic  Sulfolobus islandicus LAL14/1
         sula  Sulfolobus sp. A20
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
   2/37
       Metallosphaera (5)
         mse  Metallosphaera sedula
         mcn  Metallosphaera cuprina
         mhk  Metallosphaera hakonensis JCM 8857 = DSM 7519
         mpru  Metallosphaera prunae
         mten  Metallosphaera tengchongensis
   2/37
   2/37
   2/37
   2/37
   2/37
       Acidianus (5)
         aman  Acidianus manzaensis
         abri  Acidianus brierleyi
         asul  Acidianus sulfidivorans
   3/37
   2/37
   2/37
       Sulfodiicoccus (1)
       Stygiolobus (1)
       Sulfuracidifex (1)
       Pyrobaculum (8)
         pai  Pyrobaculum aerophilum
         pas  Pyrobaculum arsenaticum
         pyr  Pyrobaculum ferrireducens
         pog  Pyrobaculum oguniense
   2/37
   2/37
   2/37
   2/37
       Caldivirga (1)
       Thermoproteus (2)
       Vulcanisaeta (2)
       Thermofilum (4)
       Acidilobus (2)
       Caldisphaera (1)
       Fervidicoccus (1)
     Thaumarchaeota (18)
       Nitrosopumilus (6)
         nmr  Nitrosopumilus maritimus
   2/37
       Nitrosomarinus (1)
       Cenarchaeum (1)
       Nitrososphaera (3)
         nga  Candidatus Nitrososphaera gargensis
         nev  Candidatus Nitrososphaera evergladensis
   3/37
   3/37
       Nitrosocosmicus (2)
         taa  Candidatus Nitrosocosmicus oleophilus
         nfn  Candidatus Nitrosocosmicus franklandus
   3/37
   2/37
       Nitrosocaldus (1)
       Caldiarchaeum (1)
         csu  Candidatus Caldiarchaeum subterraneum
   2/37
       Nitrosopelagicus (1)
       Nitrosotenuis (1)
       Nitrosotalea (1)
     Korarchaeota (1)
       Korarchaeum (1)
 
     Bathyarchaeota (2)
       unclassified Bathyarchaeota (2)
 
     Geothermarchaeota (1)
       Conexivisphaera (1)
 
     Nanoarchaeota (2)
       Nanoarchaeum (1)
       Nanopusillus (1)
 
 
     Micrarchaeota (1)
       Candidatus Mancarchaeum (1)
 
     Lokiarchaeota (2)
       Lokiarchaeum (1)
       Prometheoarchaeum (1)
 
 
     unclassified Archaea (2)

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Last updated: July 17, 2020

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