KEGG Prokaryotes and NCBI Reference/Representative Genomes

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 Bacteria
   Proteobacteria
     Gammaproteobacteria
       Enterobacterales
         Enterobacteriaceae
           Escherichia
             Escherichia coli
               Escherichia coli K-12 MG1655 [TAX:511145]
               Escherichia coli K-12 W3110 [TAX:316407]
               Escherichia coli K-12 DH10B [TAX:316385]
               Escherichia coli BW2952 [TAX:595496]
               Escherichia coli K-12 MDS42 [TAX:1110693]
               Escherichia coli O157:H7 EDL933 (EHEC) [TAX:155864]
               Escherichia coli O157:H7 Sakai (EHEC) [TAX:386585]
               Escherichia coli O157:H7 EC4115 (EHEC) [TAX:444450]
               Escherichia coli O157:H7 TW14359 (EHEC) [TAX:544404]
               Escherichia coli O157:H7 Xuzhou21 (EHEC) [TAX:741093]
               Escherichia coli O26:H11 11368 (EHEC) [TAX:573235]
               Escherichia coli O111:H- 11128 (EHEC) [TAX:585396]
               Escherichia coli O103:H2 12009 (EHEC) [TAX:585395]
               Escherichia coli O127:H6 E2348/69 (EPEC) [TAX:574521]
               Escherichia coli O55:H7 CB9615 (EPEC) [TAX:701177]
               Escherichia coli O55:H7 RM12579 (EPEC) [TAX:1048689]
               Escherichia coli O6:K2:H1 CFT073 (UPEC) [TAX:199310]
               Escherichia coli O6:K15:H31 536 (UPEC) [TAX:362663]
               Escherichia coli O18:K1:H7 UTI89 (UPEC) [TAX:364106]
               Escherichia coli APEC O1 (APEC) [TAX:405955]
               Escherichia coli O9 HS (commensal) [TAX:331112]
               Escherichia coli E24377A (ETEC) [TAX:331111]
               Escherichia coli SMS-3-5 (environmental) [TAX:439855]
               Escherichia coli O152:H28 SE11 (commensal) [TAX:409438]
               Escherichia coli O8 IAI1 (commensal) [TAX:585034]
               Escherichia coli O81 ED1a (commensal) [TAX:585397]
               Escherichia coli 55989 (EAEC) [TAX:585055]
               Escherichia coli O7:K1 IAI39 (ExPEC) [TAX:585057]
               Escherichia coli O7:K1 CE10 [TAX:1072459]
               Escherichia coli O17:K52:H18 UMN026 (ExPEC) [TAX:585056]
               Escherichia coli O45:K1:H7 S88 (ExPEC) [TAX:585035]
               Escherichia coli O44:H18 042 (EAEC) [TAX:216592]
               Escherichia coli O83:H1 NRG 857C [TAX:685038]
               Escherichia coli O78:H11:K80 H10407 (ETEC) [TAX:316401]
               Escherichia coli O150:H5 SE15 (commensal) [TAX:431946]
               Escherichia coli O104:H4 2009EL-2071 [TAX:1133853]
               Escherichia coli O104:H4 2009EL-2050 [TAX:1134782]
               Escherichia coli O104:H4 2011C-3493 [TAX:1133852]
               Escherichia coli ATCC 8739 [TAX:481805]
               Escherichia coli B REL606 [TAX:413997]
               Escherichia coli BL21-Gold(DE3)pLysS AG [TAX:866768]
               Escherichia coli KO11FL [TAX:595495]
               Escherichia coli KO11FL [TAX:595495]
               Escherichia coli ABU 83972 [TAX:655817]
               Escherichia coli DH1 [TAX:536056]
               Escherichia coli DH1 [TAX:536056]
               Escherichia coli IHE3034 [TAX:714962]
               Escherichia coli NA114 (UPEC) [TAX:1033813]
               Escherichia coli UM146 [TAX:869729]
               Escherichia coli UMNK88 [TAX:696406]
               Escherichia coli W [TAX:566546]
               Escherichia coli W [TAX:566546]
               Escherichia coli clone D i14 [TAX:885275]
               Escherichia coli clone D i2 [TAX:885276]
               Escherichia coli P12b [TAX:910348]
               Escherichia coli BL21(DE3) [TAX:469008]
               Escherichia coli BL21(DE3) [TAX:469008]
               Escherichia coli LF82 [TAX:591946]
               Escherichia coli APEC O78 [TAX:1274814]
               Escherichia coli LY180 [TAX:1335916]
               Escherichia coli PMV-1 [TAX:1382700]
               Escherichia coli JJ1886 [TAX:1355100]
               Escherichia coli O145:H28 RM13514 (EHEC) [TAX:1248902]
               Escherichia coli O145:H28 RM13516 (EHEC) [TAX:1248915]
               Escherichia coli O25b:K100:H4-ST131 EC958 (UPEC) [TAX:941322]
eco*
ecj*
ecd
ebw
ecok
ece*
ecs*
ecf*
etw
elx
eoj
eoi
eoh
ecg*
eok
elr
ecc*
ecp*
eci*
ecv*
ecx*
ecw*
ecm*
ecy*
ecr*
ecq*
eck*
ect*
eoc
eum*
ecz*
elo
eln
elh
ese
eso
esm
esl
ecl*
ebr
ebd
eko
ekf
eab
edh
edj
eih
ena
elu
eun
elw
ell
elc
eld
elp
ebl
ebe
elf
ecoa
ecol
ecoi
ecoj
ecoo
ecoh
ecos
ref
 
 
 
 
 
ref
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
ref
 
ref
 
 
ref
 
 
 
 
ref
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
             Escherichia fergusonii
               Escherichia fergusonii [TAX:585054]
efe*
 
             Escherichia albertii
               Escherichia albertii [TAX:1440052]
eal
 
           Salmonella
             Salmonella enterica
               Salmonella enterica subsp. enterica serovar Typhi CT18 [TAX:220341]
               Salmonella enterica subsp. enterica serovar Typhi Ty2 [TAX:209261]
               Salmonella enterica subsp. enterica serovar Typhi P-stx-12 [TAX:1132507]
               Salmonella enterica subsp. enterica serovar Typhi Ty21a [TAX:527001]
               Salmonella enterica subsp. enterica serovar Typhimurium LT2 [TAX:99287]
               Salmonella enterica subsp. enterica serovar Typhimurium 14028S [TAX:588858]
               Salmonella enterica subsp. enterica serovar Typhimurium D23580 [TAX:568708]
               Salmonella enterica subsp. enterica serovar Typhimurium SL1344 [TAX:216597]
               Salmonella enterica subsp. enterica serovar Typhimurium T000240 [TAX:718274]
               Salmonella enterica subsp. enterica serovar Typhimurium UK-1 [TAX:990282]
               Salmonella enterica subsp. enterica serovar Typhimurium ST4/74 [TAX:909946]
               Salmonella enterica subsp. enterica serovar Typhimurium 798 [TAX:1008297]
               Salmonella enterica subsp. enterica serovar Typhimurium U288 [TAX:1171376]
               Salmonella enterica subsp. enterica serovar Typhimurium var. 5- CFSAN001921 [TAX:1271862]
               Salmonella enterica subsp. enterica serovar Typhimurium DT2 [TAX:568709]
               Salmonella enterica subsp. enterica serovar Typhimurium DT104 [TAX:85569]
               Salmonella enterica subsp. enterica serovar Typhimurium 138736 [TAX:90371]
               Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736 [TAX:866913]
               Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150 [TAX:295319]
               Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601 [TAX:554290]
               Salmonella enterica subsp. enterica serovar Paratyphi B [TAX:1016998]
               Salmonella enterica subsp. enterica serovar Paratyphi C [TAX:476213]
               Salmonella enterica subsp. enterica serovar Choleraesuis [TAX:321314]
               Salmonella enterica subsp. enterica serovar Heidelberg SL476 [TAX:454169]
               Salmonella enterica subsp. enterica serovar Heidelberg B182 [TAX:1160717]
               Salmonella enterica subsp. enterica Serovar Heidelberg CFSAN002069 [TAX:1271864]
               Salmonella enterica subsp. enterica serovar Heidelberg 41578 [TAX:1124936]
               Salmonella enterica subsp. enterica serovar Newport SL254 [TAX:423368]
               Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1 [TAX:877468]
               Salmonella enterica subsp. enterica serovar Schwarzengrund [TAX:439843]
               Salmonella enterica subsp. enterica serovar Agona SL483 [TAX:454166]
               Salmonella enterica subsp. enterica serovar Agona 24249 [TAX:1406860]
               Salmonella enterica subsp. enterica serovar Dublin [TAX:439851]
               Salmonella enterica subsp. enterica serovar Gallinarum 287/91 [TAX:550538]
               Salmonella enterica subsp. enterica serovar Gallinarum/pullorum RKS5078 [TAX:1081093]
               Salmonella enterica subsp. enterica serovar Gallinarum/pullorum CDC1983-67 [TAX:1225522]
               Salmonella enterica subsp. enterica serovar Enteritidis P125109 [TAX:550537]
               Salmonella enterica subsp. enterica serovar Enteritidis EC20090135 [TAX:1412460]
               Salmonella enterica subsp. enterica serovar Enteritidis EC20090193 [TAX:1412459]
               Salmonella enterica subsp. enterica serovar Enteritidis EC20090332 [TAX:1412461]
               Salmonella enterica subsp. enterica serovar Enteritidis EC20090531 [TAX:1412462]
               Salmonella enterica subsp. enterica serovar Enteritidis OLF-SE1-1019-1 [TAX:149539]
               Salmonella enterica subsp. enterica serovar Javiana [TAX:1267753]
               Salmonella enterica subsp. enterica Serovar Cubana [TAX:1271863]
               Salmonella enterica subsp. enterica serovar Bareilly [TAX:1173427]
               Salmonella enterica subsp. enterica serovar Pullorum [TAX:1298917]
               Salmonella enterica subsp. enterica serovar Bovismorbificans [TAX:1320309]
               Salmonella enterica subsp. enterica serovar Thompson [TAX:1064551]
               Salmonella enterica subsp. enterica serovar Tennessee [TAX:1003191]
               Salmonella enterica subsp. arizonae [TAX:41514]
sty*
stt*
sex
sent
stm*
seo
sev
sey
sem
sej
seb
sef
setu
setc
senr
send
seni
seen
spt*
sek*
spq*
sei*
sec*
seh*
shb
senh
seeh
see*
senn
sew*
sea*
sens
sed*
seg*
sel
sega
set*
sena
seno
senv
senq
senl
senj
seec
seeb
seep
senb
sene
senc
ses*
ref
 
 
 
ref
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
             Salmonella bongori
               Salmonella bongori NCTC 12419 [TAX:218493]
               Salmonella bongori N268-08 [TAX:1197719]
               Salmonella bongori serovar 48:z41:-- [TAX:1382510]
sbg
sbz
sbv
 
 
 
           Shigella
             Shigella flexneri
               Shigella flexneri 301 (serotype 2a) [TAX:198214]
               Shigella flexneri 2457T (serotype 2a) [TAX:198215]
               Shigella flexneri 8401 (serotype 5b) [TAX:373384]
               Shigella flexneri 2002017 (serotype Fxv) [TAX:591020]
               Shigella flexneri 2003036 [TAX:1282357]
               Shigella flexneri Shi06HN006 (serotype Yv) [TAX:1282358]
               Shigella flexneri NCTC1 [TAX:623]
sfl*
sfx*
sfv*
sfe
sfn
sfs
sft
ref
 
 
 
 
 
 
             Shigella sonnei
               Shigella sonnei Ss046 [TAX:300269]
ssn*
 
             Shigella boydii
               Shigella boydii Sb227 [TAX:300268]
               Shigella boydii CDC 3083-94 [TAX:344609]
sbo*
sbc*
 
 
             Shigella dysenteriae
               Shigella dysenteriae Sd197 [TAX:300267]
               Shigella dysenteriae 1617 [TAX:754093]
sdy*
sdz
ref
 
             Shigella sp. PAMC 28760
               Shigella sp. PAMC 28760 [TAX:1813821]
shq
 
           Enterobacter
             Enterobacter sp. 638
               Enterobacter sp. 638 [TAX:399742]
ent*
 
             Enterobacter cloacae complex
               Enterobacter cloacae
                 Enterobacter cloacae subsp. cloacae ATCC 13047 [TAX:716541]
                 Enterobacter cloacae subsp. cloacae ENHKU01 [TAX:1211025]
                 Enterobacter cloacae subsp. cloacae NCTC 9394 [TAX:718254]
                 Enterobacter cloacae EcWSU1 [TAX:1045856]
                 Enterobacter cloacae subsp. dissolvens SDM [TAX:1104326]
                 Enterobacter cloacae GGT036 [TAX:550]
                 Enterobacter cloacae ECNIH2 [TAX:1333850]
                 Enterobacter cloacae ECNIH4 [TAX:550]
                 Enterobacter cloacae ECNIH5 [TAX:550]
                 Enterobacter cloacae 34399 [TAX:550]
                 Enterobacter cloacae 34977 [TAX:550]
                 Enterobacter cloacae 34983 [TAX:550]
enc
eno
eclo
eec
enl
eclg
ecle
ecln
ecli
eclx
ecly
eclz
ref
 
 
 
 
 
 
 
 
 
 
 
               Enterobacter cloacae complex 'Hoffmann cluster III'
                 Enterobacter cloacae ECNIH3 [TAX:1333851]
                 Enterobacter cloacae ECR091 [TAX:1333849]
ecla
eclc
 
 
               Enterobacter lignolyticus
                 Enterobacter lignolyticus [TAX:701347]
esc*
rep
               Enterobacter asburiae
                 Enterobacter asburiae LF7a [TAX:640513]
                 Enterobacter asburiae L1 [TAX:1421338]
eas
eau
 
 
               Enterobacter hormaechei
                 Enterobacter hormaechei [TAX:158836]
ehm
 
               Enterobacter kobei
                 Enterobacter kobei [TAX:208224]
ekb
 
               Enterobacter ludwigii
                 Enterobacter ludwigii [TAX:299767]
elg
 
             Enterobacter sp. R4-368
               Enterobacter sp. R4-368 [TAX:1166130]
enr
 
             Enterobacter sp. E20
               Enterobacter sp. E20 [TAX:1560339]
enx
 
             Enterobacter sp. FY-07
               Enterobacter sp. FY-07 [TAX:1692238]
enf
 
           Cronobacter
             Cronobacter sakazakii
               Cronobacter sakazakii ATCC BAA-894 [TAX:290339]
               Cronobacter sakazakii ES15 [TAX:1138308]
               Cronobacter sakazakii Sp291 [TAX:956149]
               Cronobacter sakazakii CMCC 45402 [TAX:1401659]
               Cronobacter sakazakii ATCC 29544 [TAX:28141]
esa*
csk
csz
csi
csj
 
 
 
 
rep
             Cronobacter condimenti
               Cronobacter condimenti [TAX:1073999]
ccon
 
             Cronobacter dublinensis
               Cronobacter dublinensis [TAX:1159554]
cdm
 
             Cronobacter malonaticus
               Cronobacter malonaticus [TAX:1159491]
cmj
 
             Cronobacter universalis
               Cronobacter universalis [TAX:1074000]
cui
 
             Cronobacter muytjensii
               Cronobacter muytjensii [TAX:1159613]
cmw
 
             Cronobacter turicensis
               Cronobacter turicensis [TAX:693216]
ctu*
 
           Klebsiella
             Klebsiella pneumoniae
               Klebsiella pneumoniae subsp. pneumoniae MGH 78578 [TAX:272620]
               Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 [TAX:484021]
               Klebsiella pneumoniae subsp. pneumoniae HS11286 [TAX:1125630]
               Klebsiella pneumoniae subsp. pneumoniae 1084 [TAX:1193292]
               Klebsiella pneumoniae subsp. pneumoniae KP5-1 [TAX:1199150]
               Klebsiella pneumoniae subsp. pneumoniae KPNIH24 [TAX:1225181]
               Klebsiella pneumoniae subsp. pneumoniae KPNIH27 [TAX:1328324]
               Klebsiella pneumoniae subsp. pneumoniae KPNIH29 [TAX:72407]
               Klebsiella pneumoniae subsp. pneumoniae KPNIH30 [TAX:72407]
               Klebsiella pneumoniae subsp. pneumoniae KPNIH31 [TAX:72407]
               Klebsiella pneumoniae subsp. pneumoniae KPNIH32 [TAX:72407]
               Klebsiella pneumoniae subsp. pneumoniae KPNIH10 [TAX:1094170]
               Klebsiella pneumoniae subsp. pneumoniae KPR0928 [TAX:1328325]
               Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 KPPR1 [TAX:72407]
               Klebsiella pneumoniae 342 [TAX:507522]
               Klebsiella pneumoniae KCTC 2242 [TAX:1049565]
               Klebsiella pneumoniae subsp. rhinoscleromatis SB3432 [TAX:861365]
               Klebsiella pneumoniae JM45 [TAX:1380908]
               Klebsiella pneumoniae CG43 [TAX:1244085]
               Klebsiella pneumoniae 30660/NJST258_1 [TAX:1420012]
               Klebsiella pneumoniae 30684/NJST258_2 [TAX:1420013]
               Klebsiella pneumoniae PMK1 [TAX:573]
               Klebsiella pneumoniae blaNDM-1 [TAX:573]
               Klebsiella pneumoniae 32192 [TAX:573]
               Klebsiella pneumoniae 34618 [TAX:573]
kpn*
kpu*
kpm
kpp
kpk
kph
kpz
kpv
kpw
kpy
kpg
kpc
kpq
kpt
kpe*
kpo
kpr
kpj
kpi
kpa
kps
kpx
kpb
kpne
kpnu
 
 
ref
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
             Klebsiella variicola
               Klebsiella variicola At-22 [TAX:640131]
               Klebsiella variicola DX120E [TAX:244366]
               Klebsiella variicola DSM 15968 [TAX:244366]
kva
kvd
kvq
 
 
 
             Klebsiella michiganensis
               Klebsiella michiganensis KCTC 1686 [TAX:1006551]
               Klebsiella michiganensis E718 [TAX:1191061]
               Klebsiella michiganensis HKOPL1 [TAX:1308980]
               Klebsiella michiganensis RC10 [TAX:1134687]
kox
koe
koy
kmi
 
 
 
 
             Klebsiella oxytoca
               Klebsiella oxytoca KONIH1 [TAX:1333852]
               Klebsiella oxytoca CAV1374 [TAX:571]
               Klebsiella oxytoca M1 [TAX:571]
kok
koc
kom
 
rep
 
             Klebsiella sp. G5
               Klebsiella sp. G5 [TAX:1715259]
kle
 
             Klebsiella quasipneumoniae
               Klebsiella quasipneumoniae [TAX:1463165]
kqu
 
             [Enterobacter] aerogenes
               Enterobacter aerogenes KCTC 2190 [TAX:1028307]
               Enterobacter aerogenes EA1509E [TAX:935296]
eae
ear
ref
 
           Citrobacter
             Citrobacter koseri
               Citrobacter koseri [TAX:290338]
cko*
 
             Citrobacter rodentium
               Citrobacter rodentium [TAX:637910]
cro*
 
             Citrobacter freundii complex
               Citrobacter freundii
                 Citrobacter freundii [TAX:1333848]
cfd
rep
             Citrobacter amalonaticus
               Citrobacter amalonaticus Y19 [TAX:1261127]
               Citrobacter amalonaticus FDAARGOS_165 [TAX:35703]
cama
caf
 
rep
             Citrobacter sp. FDAARGOS_156
               Citrobacter sp. FDAARGOS_156 [TAX:1702170]
cif
 
           ant endosymbionts
             Candidatus Blochmannia
               Candidatus Blochmannia floridanus
                 Candidatus Blochmannia floridanus (Camponotus floridanus) [TAX:203907]
bfl*
rep
               Candidatus Blochmannia pennsylvanicus
                 Candidatus Blochmannia pennsylvanicus (Camponotus pennsylvanicus) [TAX:291272]
bpn*
rep
               Candidatus Blochmannia vafer
                 Candidatus Blochmannia vafer (Camponotus vafer) [TAX:859654]
bva
rep
               Candidatus Blochmannia chromaiodes
                 Candidatus Blochmannia chromaiodes (Camponotus chromaiodes) [TAX:1240471]
bchr
 
               Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus
                 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 757 [TAX:1505597]
ben
rep
               Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri
                 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 675 [TAX:1505596]
bed
rep
           aphid secondary symbionts
             Candidatus Hamiltonella
               Candidatus Hamiltonella defensa
                 Candidatus Hamiltonella defensa (Acyrthosiphon pisum) [TAX:572265]
hde*
 
             secondary endosymbiont of Ctenarytaina eucalypti
               Secondary endosymbiont of Ctenarytaina eucalypti [TAX:1199245]
sect
rep
             secondary endosymbiont of Heteropsylla cubana
               Secondary endosymbiont of Heteropsylla cubana [TAX:134287]
sehc
rep
           secondary endosymbiont of Trabutina mannipara
             Secondary endosymbiont of Trabutina mannipara [TAX:1835721]
senm
 
           Candidatus Riesia
             Candidatus Riesia pediculicola
               Candidatus Riesia pediculicola [TAX:515618]
rip*
rep
           Candidatus Moranella
             Candidatus Moranella endobia
               Candidatus Moranella endobia PCIT [TAX:903503]
               Candidatus Moranella endobia PCVAL [TAX:1234603]
men
meo
rep
 
           Shimwellia
             Shimwellia blattae
               Shimwellia blattae [TAX:630626]
ebt
rep
           Raoultella
             Raoultella ornithinolytica
               Raoultella ornithinolytica B6 [TAX:1286170]
               Raoultella ornithinolytica S12 [TAX:54291]
ror
ron
 
 
           Cedecea
             Cedecea neteri
               Cedecea neteri SSMD04 [TAX:158822]
               Cedecea neteri [TAX:158822]
               Cedecea neteri [TAX:158822]
               Cedecea neteri [TAX:158822]
cnt
cem
cen
ced
rep
 
 
 
           Pluralibacter
             Pluralibacter gergoviae
               Pluralibacter gergoviae [TAX:61647]
pge
rep
           Kosakonia
             Kosakonia sacchari
               Kosakonia sacchari [TAX:1235834]
ksa
rep
             Kosakonia oryzae
               Kosakonia oryzae [TAX:497725]
kor
 
             Kosakonia radicincitans
               Kosakonia radicincitans [TAX:283686]
krd
 
             Kosakonia cowanii
               Kosakonia cowanii [TAX:208223]
kco
 
           Kluyvera
             Kluyvera intermedia
               Kluyvera intermedia [TAX:61648]
kin
rep
           Candidatus Ishikawaella
             Candidatus Ishikawaella capsulata
               Candidatus Ishikawaella capsulata [TAX:476281]
icp
rep
           Leclercia
             Leclercia adecarboxylata
               Leclercia adecarboxylata [TAX:83655]
lax
 
           Lelliottia
             Lelliottia amnigena
               Lelliottia amnigena [TAX:61646]
laz
 
           Candidatus Tachikawaea
             Candidatus Tachikawaea gelatinosa
               Candidatus Tachikawaea gelatinosa [TAX:1410383]
sbw
rep
           Candidatus Doolittlea
             Candidatus Doolittlea endobia
               Candidatus Doolittlea endobia [TAX:1778262]
den
 
           Candidatus Hoaglandella
             Candidatus Hoaglandella endobia
               Candidatus Hoaglandella endobia [TAX:1778263]
hed
 
           Candidatus Gullanella
             Candidatus Gullanella endobia
               Candidatus Gullanella endobia [TAX:1070130]
ged
 
           Candidatus Mikella
             Candidatus Mikella endobia
               Candidatus Mikella endobia [TAX:1778264]
cmik
 
           Enterobacteriaceae bacterium strain FGI 57
             Enterobacteriaceae bacterium FGI 57 [TAX:693444]
ebf
 
           Plautia stali symbiont
             Plautia stali symbiont [TAX:891974]
psts
rep
         Yersiniaceae
           Yersinia
             Yersinia pestis
               Yersinia pestis CO92 (biovar Orientalis) [TAX:214092]
               Yersinia pestis KIM10+ (biovar Mediaevalis) [TAX:187410]
               Yersinia pestis Antiqua (biovar Antiqua) [TAX:360102]
               Yersinia pestis Nepal516 (biovar Antiqua) [TAX:377628]
               Yersinia pestis 91001 (biovar Microtus) [TAX:229193]
               Yersinia pestis Pestoides F [TAX:386656]
               Yersinia pestis Angola [TAX:349746]
               Yersinia pestis Z176003 [TAX:637386]
               Yersinia pestis A1122 [TAX:1035377]
               Yersinia pestis D106004 [TAX:637382]
               Yersinia pestis D182038 [TAX:637385]
               Yersinia pestis biovar Medievalis Harbin 35 [TAX:547048]
               Yersinia pestis PBM19 [TAX:632]
               Yersinia pestis Harbin35 [TAX:632]
               Yersinia pestis Shasta [TAX:632]
               Yersinia pestis El Dorado [TAX:632]
ype*
ypk*
ypa*
ypn*
ypm*
ypp*
ypg*
ypz*
ypt
ypd
ypx
yph
ypw
ypj
ypv
ypl
ref
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
             Yersinia pseudotuberculosis
               Yersinia pseudotuberculosis IP32953 (serotype I) [TAX:273123]
               Yersinia pseudotuberculosis IP 32953 (serotype 1) [TAX:273123]
               Yersinia pseudotuberculosis IP31758 (serotype O:1b) [TAX:349747]
               Yersinia pseudotuberculosis YPIII [TAX:502800]
               Yersinia pseudotuberculosis PB1/+ [TAX:502801]
               Yersinia pseudotuberculosis ATCC 6904 [TAX:633]
               Yersinia pseudotuberculosis MD67 [TAX:633]
               Yersinia pseudotuberculosis EP2/+ [TAX:633]
               Yersinia pseudotuberculosis 1 [TAX:633]
               Yersinia pseudotuberculosis PA3606 [TAX:748672]
yps*
ypo
ypi*
ypy*
ypb*
ypq
ypu
ypr
ypc
ypf
 
 
 
 
 
 
 
 
 
 
             Yersinia enterocolitica
               Yersinia enterocolitica subsp. enterocolitica 8081 [TAX:393305]
               Yersinia enterocolitica subsp. palearctica 105.5R(r) [TAX:994476]
               Yersinia enterocolitica subsp. palearctica Y11 [TAX:930944]
               Yersinia enterocolitica LC20 [TAX:1443113]
               Yersinia enterocolitica WA [TAX:630]
               Yersinia enterocolitica 2516-87 [TAX:630]
               Yersinia enterocolitica FORC_002 [TAX:630]
               Yersinia enterocolitica (type O:5) YE53/03 [TAX:1262462]
yen*
yep*
yey
yel
yew
yet
yef
yee
ref
 
rep
 
 
 
 
 
             Yersinia similis
               Yersinia similis [TAX:367190]
ysi
 
             Yersinia aldovae
               Yersinia aldovae [TAX:1453495]
yal
 
             Yersinia frederiksenii
               Yersinia frederiksenii [TAX:1454377]
yfr
 
             Yersinia intermedia
               Yersinia intermedia [TAX:631]
yin
 
             Yersinia kristensenii
               Yersinia kristensenii [TAX:28152]
ykr
 
             Yersinia rohdei
               Yersinia rohdei [TAX:29485]
yro
 
             Yersinia ruckeri
               Yersinia ruckeri YRB [TAX:29486]
               Yersinia ruckeri Big Creek 74 [TAX:29486]
yru
yrb
 
rep
             Yersinia aleksiciae
               Yersinia aleksiciae [TAX:263819]
yak
 
           Serratia
             Serratia proteamaculans
               Serratia proteamaculans [TAX:399741]
spe*
 
             Serratia plymuthica
               Serratia plymuthica AS9 [TAX:768492]
               Serratia plymuthica 4Rx13 [TAX:682634]
               Serratia plymuthica S13 [TAX:1348660]
               Serratia plymuthica PRI-2C [TAX:1154756]
srr
srl
sry
sply
 
 
 
 
             Serratia sp. AS12
               Serratia sp. AS12 [TAX:768490]
srs
 
             Serratia sp. AS13
               Serratia sp. AS13 [TAX:768493]
sra
 
             Serratia symbiotica
               Serratia symbiotica [TAX:568817]
ssz
 
             Serratia marcescens
               Serratia marcescens FGI94 [TAX:1249634]
               Serratia marcescens WW4 [TAX:435998]
               Serratia marcescens SM39 [TAX:1334564]
               Serratia marcescens subsp. marcescens Db11 [TAX:273526]
smaf
smw
smar
smac
 
 
 
rep
             Serratia liquefaciens
               Serratia liquefaciens [TAX:1346614]
slq
rep
             Serratia sp. FS14
               Serratia sp. FS14 [TAX:1327989]
serf
 
             Serratia sp. SCBI
               Serratia sp. SCBI [TAX:488142]
sers
 
             Serratia fonticola
               Serratia fonticola DSM 4576 [TAX:47917]
               Serratia fonticola GS2 [TAX:47917]
sfw
sfg
 
rep
             Serratia rubidaea
               Serratia rubidaea [TAX:61652]
srz
rep
           Chania
             Chania multitudinisentens
               Chania multitudinisentens [TAX:1441930]
sfo
rep
           Rahnella
             Rahnella sp. Y9602
               Rahnella sp. Y9602 [TAX:741091]
rah*
 
             Rahnella aquatilis
               Rahnella aquatilis CIP 78.65 = ATCC 33071 [TAX:745277]
               Rahnella aquatilis HX2 [TAX:1151116]
raq
raa
 
rep
         Pectobacteriaceae
           Pectobacterium
             Pectobacterium atrosepticum
               Pectobacterium atrosepticum SCRI1043 [TAX:218491]
               Pectobacterium atrosepticum JG10-08 [TAX:29471]
               Pectobacterium atrosepticum 21A [TAX:29471]
eca*
patr
pato
 
 
 
             Pectobacterium carotovorum
               Pectobacterium carotovorum subsp. carotovorum PC1 [TAX:561230]
               Pectobacterium carotovorum subsp. carotovorum PCC21 [TAX:1218933]
               Pectobacterium carotovorum subsp. odoriferum [TAX:78398]
pct*
pcc
pcv
rep
 
 
             Pectobacterium parmentieri
               Pectobacterium parmentieri WPP163 [TAX:561231]
               Pectobacterium parmentieri RNS08.42.1A [TAX:1905730]
pwa*
ppar
 
 
             Pectobacterium sp. SCC3193
               Pectobacterium sp. SCC3193 [TAX:1166016]
pec
 
             Pectobacterium wasabiae
               Pectobacterium wasabiae [TAX:1175631]
pws
 
           Sodalis
             Sodalis glossinidius
               Sodalis glossinidius (Glossina spp.) [TAX:343509]
sgl*
rep
             Sodalis praecaptivus
               Sodalis praecaptivus [TAX:1239307]
sod
rep
             Candidatus Sodalis pierantonius
               Candidatus Sodalis pierantonius [TAX:2342]
pes
 
           Dickeya
             Dickeya paradisiaca
               Dickeya dadantii Ech703 [TAX:579405]
               Dickeya paradisiaca NCPPB 2511 [TAX:1224150]
dda*
 
 
rep
             Dickeya dadantii
               Dickeya dadantii 3937 [TAX:198628]
ddd
rep
             Dickeya chrysanthemi
               Dickeya zeae Ech1591 [TAX:561229]
dze*
 
             Dickeya zeae
               Dickeya zeae Ech586 [TAX:590409]
               Dickeya zeae EC1 [TAX:1427366]
ddc*
dzc
 
 
             Dickeya solani
               Dickeya solani [TAX:1225786]
               Dickeya solani IPO 2222 [TAX:1225786]
dso
 
 
rep
         Erwiniaceae
           Erwinia
             Erwinia tasmaniensis
               Erwinia tasmaniensis [TAX:465817]
eta*
 
             Erwinia pyrifoliae
               Erwinia pyrifoliae Ep1/96 [TAX:634499]
               Erwinia pyrifoliae DSM 12163 [TAX:644651]
epy
epr
 
 
             Erwinia amylovora
               Erwinia amylovora CFBP1430 [TAX:665029]
               Erwinia amylovora ATCC 49946 [TAX:716540]
eam*
eay*
rep
 
             Erwinia billingiae
               Erwinia billingiae [TAX:634500]
ebi
rep
             Erwinia sp. Ejp617
               Erwinia sp. Ejp617 [TAX:215689]
erj
 
             Erwinia gerundensis
               Erwinia gerundensis [TAX:1619313]
ege
 
           Buchnera
             Buchnera aphidicola
               Buchnera aphidicola APS (Acyrthosiphon pisum) [TAX:107806]
               Buchnera aphidicola 5A (Acyrthosiphon pisum) [TAX:563178]
               Buchnera aphidicola Tuc7 (Acyrthosiphon pisum) [TAX:561501]
               Buchnera aphidicola JF98 (Acyrthosiphon pisum) [TAX:713600]
               Buchnera aphidicola JF99 (Acyrthosiphon pisum) [TAX:713601]
               Buchnera aphidicola LL01 (Acyrthosiphon pisum) [TAX:713603]
               Buchnera aphidicola TLW03 (Acyrthosiphon pisum) [TAX:713602]
               Buchnera aphidicola Ak (Acyrthosiphon kondoi) [TAX:1005090]
               Buchnera aphidicola Ua (Uroleucon ambrosiae) [TAX:1005057]
               Buchnera aphidicola F009 (Myzus persicae) [TAX:1009859]
               Buchnera aphidicola G002 (Myzus persicae) [TAX:1009858]
               Buchnera aphidicola USDA (Myzus persicae) [TAX:1009856]
               Buchnera aphidicola W106 (Myzus persicae) [TAX:1009857]
               Buchnera aphidicola Sg (Schizaphis graminum) [TAX:198804]
               Buchnera aphidicola Bp (Baizongia pistaciae) [TAX:224915]
               Buchnera aphidicola BCc [TAX:372461]
               Buchnera aphidicola (Cinara tujafilina) [TAX:261317]
               Buchnera aphidicola (Aphis glycines) [TAX:1265350]
buc*
bap*
bau*
baw
bajc
bua
bup
bak
buh
bapf
bapg
bapu
bapw
bas*
bab*
bcc*
baj
 
ref
 
 
 
 
 
 
rep
rep
 
rep
 
 
rep
rep
rep
rep
rep
           Wigglesworthia
             Wigglesworthia glossinidia
               Wigglesworthia glossinidia brevipalpis (Glossina brevipalpis) [TAX:36870]
               Wigglesworthia glossinidia morsitans (Glossina morsitans) [TAX:1142511]
wbr*
wgl
rep
rep
           Pantoea
             Pantoea ananatis
               Pantoea ananatis LMG 20103 [TAX:706191]
               Pantoea ananatis LMG 5342 [TAX:1123863]
               Pantoea ananatis AJ13355 [TAX:932677]
               Pantoea ananatis PA13 [TAX:1095774]
pam*
plf
paj
paq
rep
 
 
 
             Pantoea vagans
               Pantoea vagans [TAX:712898]
pva
 
             Pantoea sp. At-9b
               Pantoea sp. At-9b [TAX:592316]
pao
 
             Pantoea rwandensis
               Pantoea rwandensis [TAX:1076550]
kln
rep
             Pantoea sp. PSNIH1
               Pantoea sp. PSNIH1 [TAX:1484158]
pant
 
             Pantoea sp. PSNIH2
               Pantoea sp. PSNIH2 [TAX:1484157]
panp
 
             Candidatus Pantoea carbekii
               Candidatus Pantoea carbekii [TAX:1235990]
               Candidatus Pantoea carbekii US [TAX:1235990]
hhs
pck
rep
 
             Pantoea agglomerans group
               Pantoea agglomerans
                 Pantoea agglomerans FDAARGOS_160 [TAX:549]
                 Pantoea agglomerans C410P1 [TAX:549]
pagg
pagc
 
rep
         Morganellaceae
           Photorhabdus
             Photorhabdus luminescens
               Photorhabdus luminescens [TAX:243265]
plu*
 
             Photorhabdus asymbiotica
               Photorhabdus asymbiotica [TAX:291112]
pay*
 
             Photorhabdus temperata
               Photorhabdus temperata [TAX:230089]
ptt
rep
           Proteus
             Proteus mirabilis
               Proteus mirabilis HI4320 [TAX:529507]
               Proteus mirabilis BB2000 [TAX:1266738]
pmr*
pmib
rep
 
             Proteus vulgaris
               Proteus vulgaris [TAX:585]
pvl
 
           Xenorhabdus
             Xenorhabdus bovienii
               Xenorhabdus bovienii SS-2004 [TAX:406818]
               Xenorhabdus bovienii CS03 [TAX:40576]
xbo*
xbv
rep
 
             Xenorhabdus nematophila
               Xenorhabdus nematophila ATCC 19061 [TAX:406817]
               Xenorhabdus nematophila AN6/1 [TAX:1437823]
xne
xnm
rep
 
             Xenorhabdus doucetiae
               Xenorhabdus doucetiae [TAX:351671]
xdo
rep
             Xenorhabdus poinarii
               Xenorhabdus poinarii [TAX:1354304]
xpo
rep
             Xenorhabdus hominickii
               Xenorhabdus hominickii [TAX:351679]
xho
 
           Providencia
             Providencia stuartii
               Providencia stuartii MRSN 2154 [TAX:1157951]
               Providencia stuartii ATCC 33672 [TAX:588]
               Providencia stuartii BE2467 [TAX:588]
psi
psx
psta
rep
 
 
             Providencia rettgeri
               Providencia rettgeri [TAX:587]
prg
rep
             Providencia sneebia
               Providencia sneebia DSM 19967 [TAX:1141660]
 
rep
           Morganella
             Morganella morganii
               Morganella morganii [TAX:1124991]
mmk
rep
           Arsenophonus
             Arsenophonus symbiont of Lipoptena fortisetosa
               Arsenophonus symbiont of Lipoptena fortisetosa [TAX:634113]
asy
 
         Hafniaceae
           Edwardsiella
             Edwardsiella ictaluri
               Edwardsiella ictaluri [TAX:634503]
eic*
rep
             Edwardsiella tarda
               Edwardsiella tarda EIB202 [TAX:498217]
               Edwardsiella tarda FL6-60 [TAX:718251]
etr*
etd
 
 
             Edwardsiella anguillarum
               Edwardsiella anguillarum [TAX:667120]
ete
 
             Edwardsiella piscicida
               Edwardsiella piscicida C07-087 [TAX:1288122]
etc
 
             Edwardsiella sp. EA181011
               Edwardsiella sp. EA181011 [TAX:1578828]
edw
 
             Edwardsiella sp. LADL05-105
               Edwardsiella sp. LADL05-105 [TAX:1650654]
edl
 
             Edwardsiella hoshinae
               Edwardsiella hoshinae [TAX:93378]
eho
 
           Hafnia
             Hafnia alvei
               Hafnia alvei [TAX:1453496]
hav
 
           Obesumbacterium
             Obesumbacterium proteus
               Obesumbacterium proteus [TAX:82983]
opo
rep
         Budviciaceae
           Pragia
             Pragia fontium
               Pragia fontium [TAX:82985]
pfq
rep
         unclassified Enterobacterales
           Plesiomonas
             Plesiomonas shigelloides
               Plesiomonas shigelloides [TAX:703]
pshi
rep
       Pasteurellales
         Pasteurellaceae
           Haemophilus
             Haemophilus influenzae
               Haemophilus influenzae Rd KW20 (serotype d) [TAX:71421]
               Haemophilus influenzae 86-028NP (nontypeable) [TAX:281310]
               Haemophilus influenzae PittEE (nontypeable) [TAX:374930]
               Haemophilus influenzae PittGG (nontypeable) [TAX:374931]
               Haemophilus influenzae F3031 (nontypeable) [TAX:866630]
               Haemophilus influenzae F3047 (nontypeable) [TAX:935897]
               Haemophilus influenzae 10810 (serotype b) [TAX:862964]
               Haemophilus influenzae R2846 (nontypeable) [TAX:262727]
               Haemophilus influenzae R2866 (nontypeable) [TAX:262728]
               Haemophilus influenzae KR494 (serotype f) [TAX:1334187]
               Haemophilus influenzae CGSHiCZ412602 [TAX:1295140]
               Haemophilus influenzae Hi375 [TAX:727]
               Haemophilus influenzae 477 [TAX:727]
               Haemophilus influenzae C486 [TAX:727]
               Haemophilus influenzae 723 [TAX:727]
hin*
hit*
hip*
hiq*
hif
hil
hiu
hie
hiz
hik
hia
hih
hiw
hic
hix
ref
 
 
 
 
 
 
 
 
 
 
 
 
 
 
             [Haemophilus] ducreyi
               Haemophilus ducreyi [TAX:233412]
hdu*
rep
             [Haemophilus] parasuis
               Haemophilus parasuis SH0165 [TAX:557723]
               Haemophilus parasuis ZJ0906 [TAX:1322346]
               Haemophilus parasuis SH03 [TAX:738]
               Haemophilus parasuis KL0318 [TAX:738]
hap*
hpaz
hpas
hpak
rep
 
 
 
             Haemophilus parainfluenzae
               Haemophilus parainfluenzae [TAX:862965]
hpr
 
           Histophilus
             Histophilus somni
               Haemophilus somnus 129PT [TAX:205914]
               Haemophilus somnus 2336 [TAX:228400]
hso*
hsm*
 
rep
           Pasteurella
             Pasteurella multocida
               Pasteurella multocida subsp. multocida Pm70 [TAX:272843]
               Pasteurella multocida subsp. multocida HN06 [TAX:1132496]
               Pasteurella multocida subsp. multocida 3480 [TAX:584721]
               Pasteurella multocida 36950 [TAX:1075089]
               Pasteurella multocida ATCC 43137 [TAX:747]
pmu*
pmv
pul
pmp
pmul
 
 
 
 
rep
           Basfia
             [Mannheimia] succiniciproducens
               Mannheimia succiniciproducens [TAX:221988]
msu*
rep
           Mannheimia
             Mannheimia haemolytica
               Mannheimia haemolytica USDA-ARS-USMARC-185 [TAX:1249526]
               Mannheimia haemolytica USDA-ARS-USMARC-183 [TAX:1249531]
               Mannheimia haemolytica USDA-ARS-USMARC-184 [TAX:1222034]
               Mannheimia haemolytica M42548 [TAX:1316932]
               Mannheimia haemolytica D153 [TAX:1261126]
               Mannheimia haemolytica D171 [TAX:1311759]
               Mannheimia haemolytica D174 [TAX:1311760]
               Mannheimia haemolytica USMARC_2286 [TAX:1366053]
               Mannheimia haemolytica 89010807N [TAX:75985]
               Mannheimia haemolytica 89010807N lktA- [TAX:75985]
mht
mhq
mhat
mhx
mhae
mham
mhao
mhal
mhaq
mhay
 
 
 
rep
 
 
 
 
 
 
             Mannheimia sp. USDA-ARS-USMARC-1261
               Mannheimia sp. USDA-ARS-USMARC-1261 [TAX:1432056]
mvr
 
             Mannheimia varigena
               Mannheimia varigena USDA-ARS-USMARC-1296 [TAX:1433287]
               Mannheimia varigena USDA-ARS-USMARC-1312 [TAX:1434214]
               Mannheimia varigena USDA-ARS-USMARC-1388 [TAX:1434215]
mvi
mvg
mve
 
 
 
           Actinobacillus
             Actinobacillus pleuropneumoniae
               Actinobacillus pleuropneumoniae L20 (serotype 5b) [TAX:416269]
               Actinobacillus pleuropneumoniae JL03 (serotype 3) [TAX:434271]
               Actinobacillus pleuropneumoniae AP76 (serotype 7) [TAX:537457]
apl*
apj*
apa*
rep
 
 
             Actinobacillus succinogenes
               Actinobacillus succinogenes [TAX:339671]
asu*
rep
             Actinobacillus suis
               Actinobacillus suis H91-0380 [TAX:696748]
               Actinobacillus suis ATCC 33415 [TAX:743972]
asi
ass
 
 
             Actinobacillus equuli
               Actinobacillus equuli [TAX:202947]
aeu
 
           Aggregatibacter
             Aggregatibacter aphrophilus
               Aggregatibacter aphrophilus NJ8700 [TAX:634176]
               Aggregatibacter aphrophilus W10433 [TAX:732]
aap*
aaz
 
rep
             Aggregatibacter actinomycetemcomitans
               Aggregatibacter actinomycetemcomitans D11S-1 [TAX:668336]
               Aggregatibacter actinomycetemcomitans ANH9381 [TAX:754507]
               Aggregatibacter actinomycetemcomitans D7S-1 [TAX:694569]
               Aggregatibacter actinomycetemcomitans HK1651 [TAX:272556]
               Aggregatibacter actinomycetemcomitans NUM4039 [TAX:1407647]
               Aggregatibacter actinomycetemcomitans [TAX:714]
aat*
aao
aan
aah
aacn
 
 
 
 
 
 
rep
           Gallibacterium
             Gallibacterium anatis
               Gallibacterium anatis [TAX:1005058]
gan*
rep
           Bibersteinia
             Bibersteinia trehalosi
               Bibersteinia trehalosi USDA-ARS-USMARC-192 [TAX:1171377]
               Bibersteinia trehalosi USDA-ARS-USMARC-188 [TAX:1263829]
               Bibersteinia trehalosi USDA-ARS-USMARC-189 [TAX:1263831]
               Bibersteinia trehalosi USDA-ARS-USMARC-190 [TAX:1263832]
bto
btre
btrh
btra
rep
 
 
 
       Xanthomonadales
         Xanthomonadaceae
           Xylella
             Xylella fastidiosa
               Xylella fastidiosa 9a5c [TAX:160492]
               Xylella fastidiosa Temecula1 [TAX:183190]
               Xylella fastidiosa M12 [TAX:405440]
               Xylella fastidiosa M23 [TAX:405441]
               Xylella fastidiosa subsp. fastidiosa GB514 [TAX:788929]
               Xylella fastidiosa MUL0034 [TAX:1401256]
               Xylella fastidiosa subsp. sandyi Ann-1 [TAX:155920]
xfa*
xft*
xfm*
xfn*
xff
xfl
xfs
rep
 
 
 
 
 
 
           Xanthomonas
             Xanthomonas campestris
               Xanthomonas campestris pv. campestris ATCC 33913 [TAX:190485]
               Xanthomonas campestris pv. campestris 8004 [TAX:314565]
               Xanthomonas campestris pv. campestris B100 [TAX:340]
               Xanthomonas campestris pv. raphani [TAX:990315]
xcc*
xcb*
xca*
xcp
ref
 
 
 
             Xanthomonas euvesicatoria
               Xanthomonas campestris pv. vesicatoria [TAX:316273]
xcv*
 
             Xanthomonas citri
               Xanthomonas citri pv. citri 306 [TAX:190486]
               Xanthomonas citri subsp. citri Aw12879 [TAX:1137651]
               Xanthomonas citri subsp. citri A306 [TAX:1308541]
               Xanthomonas citri subsp. citri UI7 [TAX:611301]
               Xanthomonas citri subsp. citri NT17 [TAX:611301]
               Xanthomonas citri subsp. citri MN10 [TAX:611301]
               Xanthomonas citri subsp. citri MN11 [TAX:611301]
               Xanthomonas citri subsp. citri MN12 [TAX:611301]
               Xanthomonas citri subsp. citri mf20 [TAX:611301]
               Xanthomonas citri subsp. citri UI6 [TAX:1308548]
xac*
xci
xct
xcu
xcn
xcw
xcr
xcm
xcf
xcj
 
 
 
 
 
 
 
 
 
 
             Xanthomonas fuscans
               Xanthomonas fuscans [TAX:366649]
xfu
 
             Xanthomonas alfalfae
               Xanthomonas axonopodis pv. citrumelo F1 [TAX:981368]
xax
 
             Xanthomonas axonopodis
               Xanthomonas axonopodis Xac29-1 [TAX:1304892]
xao
 
             Xanthomonas oryzae
               Xanthomonas oryzae pv. oryzae KACC 10331 [TAX:291331]
               Xanthomonas oryzae pv. oryzae MAFF 311018 [TAX:342109]
               Xanthomonas oryzae pv. oryzae PXO99A [TAX:360094]
               Xanthomonas oryzae pv. oryzae PXO86 [TAX:1458476]
               Xanthomonas oryzae pv. oryzicola BLS256 [TAX:383407]
               Xanthomonas oryzae pv. oryzicola CFBP7342 [TAX:129394]
xoo*
xom*
xop*
xoy
xor
xoz
rep
 
 
 
 
 
             Xanthomonas albilineans
               Xanthomonas albilineans [TAX:380358]
xal*
 
             Xanthomonas sacchari
               Xanthomonas sacchari [TAX:56458]
xsa
rep
             Xanthomonas translucens
               Xanthomonas translucens [TAX:487909]
xtn
rep
             Xanthomonas fragariae
               Xanthomonas fragariae [TAX:48664]
xfr
rep
             Xanthomonas gardneri
               Xanthomonas gardneri [TAX:90270]
xga
rep
             Xanthomonas vesicatoria
               Xanthomonas vesicatoria [TAX:925775]
xve
 
           Stenotrophomonas
             Stenotrophomonas maltophilia group
               Stenotrophomonas maltophilia
                 Stenotrophomonas maltophilia K279a [TAX:522373]
                 Stenotrophomonas maltophilia R551-3 [TAX:391008]
                 Stenotrophomonas maltophilia JV3 [TAX:868597]
                 Stenotrophomonas maltophilia D457 [TAX:1163399]
sml*
smt*
buj
smz
rep
 
 
 
             Stenotrophomonas acidaminiphila
               Stenotrophomonas acidaminiphila [TAX:128780]
sacz
rep
             Stenotrophomonas sp. KCTC 12332
               Stenotrophomonas sp. KCTC 12332 [TAX:1793721]
stek
 
             Stenotrophomonas rhizophila
               Stenotrophomonas rhizophila [TAX:216778]
               Stenotrophomonas rhizophila [TAX:216778]
srh
 
 
rep
             Stenotrophomonas sp. LM091
               Stenotrophomonas sp. LM091 [TAX:1904944]
slm
 
             Stenotrophomonas nitritireducens
               Stenotrophomonas nitritireducens [TAX:83617]
 
rep
           Pseudoxanthomonas
             Pseudoxanthomonas suwonensis
               Pseudoxanthomonas suwonensis 11-1 [TAX:743721]
               Pseudoxanthomonas suwonensis J1 [TAX:314722]
psu*
psuw
rep
rep
             Pseudoxanthomonas spadix
               Pseudoxanthomonas spadix [TAX:1045855]
psd
rep
           Lysobacter
             Lysobacter antibioticus
               Lysobacter antibioticus 76 [TAX:84531]
               Lysobacter antibioticus ATCC 29479 [TAX:84531]
lab
laq
 
rep
             Lysobacter capsici
               Lysobacter capsici [TAX:435897]
lcp
rep
             Lysobacter gummosus
               Lysobacter gummosus [TAX:262324]
lgu
 
             Lysobacter enzymogenes
               Lysobacter enzymogenes C3 [TAX:69]
               Lysobacter enzymogenes M497-1 [TAX:69]
lez
lem
rep
 
           [Pseudomonas] geniculata
             Pseudomonas geniculata [TAX:1167641]
snj
 
         Rhodanobacteraceae
           Frateuria
             Frateuria aurantia
               Frateuria aurantia [TAX:767434]
fau
rep
           Rhodanobacter
             Rhodanobacter denitrificans
               Rhodanobacter denitrificans [TAX:666685]
rhd
rep
           Dyella
             Dyella jiangningensis
               Dyella jiangningensis [TAX:1379159]
dji
rep
             Dyella japonica
               Dyella japonica [TAX:1217721]
dja
 
             Dyella thiooxydans
               Dyella thiooxydans [TAX:445710]
dtx
rep
           Dokdonella
             Dokdonella koreensis
               Dokdonella koreensis [TAX:1300342]
dko
 
           Luteibacter
             Luteibacter rhizovicinus
               Luteibacter rhizovicinus [TAX:242606]
lrz
rep
       Vibrionales
         Vibrionaceae
           Vibrio
             Vibrio cholerae
               Vibrio cholerae O1 biovar El Tor N16961 [TAX:243277]
               Vibrio cholerae O1 biovar El Tor FJ147 [TAX:686]
               Vibrio cholerae O1 2010EL-1786 [TAX:914149]
               Vibrio cholerae MJ-1236 [TAX:593588]
               Vibrio cholerae O395 [TAX:345073]
               Vibrio cholerae O395 [TAX:345073]
               Vibrio cholerae M66-2 [TAX:579112]
               Vibrio cholerae IEC224 [TAX:1134456]
               Vibrio cholerae LMA3984-4 [TAX:935297]
               Vibrio cholerae 2012EL-2176 [TAX:666]
               Vibrio cholerae MS6 [TAX:1420885]
               Vibrio cholerae 1154-74 [TAX:666]
               Vibrio cholerae 10432-62 [TAX:666]
vch*
vcf
vce
vcj*
vco*
vcr
vcm*
vci
vcl
vcq
vcs
vcx
vcz
ref
 
 
 
 
 
 
 
 
 
 
 
 
             Vibrio vulnificus
               Vibrio vulnificus CMCP6 [TAX:216895]
               Vibrio vulnificus YJ016 [TAX:196600]
               Vibrio vulnificus MO6-24/O [TAX:914127]
               Vibrio vulnificus 93U204 [TAX:672]
vvu*
vvy*
vvm*
vvl
 
rep
 
 
             Vibrio parahaemolyticus
               Vibrio parahaemolyticus RIMD 2210633 [TAX:223926]
               Vibrio parahaemolyticus BB22OP [TAX:1211705]
               Vibrio parahaemolyticus O1:K33 CDC_K4557 [TAX:1338032]
               Vibrio parahaemolyticus O1:Kuk FDA_R31 [TAX:1338034]
               Vibrio parahaemolyticus UCM-V493 [TAX:1429044]
vpa*
vpb
vpk
vpf
vph
ref
 
 
 
 
             Vibrio campbellii
               Vibrio campbellii [TAX:338187]
               Vibrio campbellii [TAX:338187]
vha*
vca
rep
 
             Vibrio alginolyticus
               Vibrio alginolyticus [TAX:1219076]
vag
rep
             Vibrio antiquarius
               Vibrio antiquarius [TAX:150340]
vex*
 
             Vibrio harveyi
               Vibrio harveyi [TAX:669]
vhr
 
             Vibrio natriegens
               Vibrio natriegens [TAX:1219067]
vna
 
             Vibrio tasmaniensis
               Vibrio tasmaniensis [TAX:575788]
vsp*
rep
             Vibrio sp. EJY3
               Vibrio sp. EJY3 [TAX:1116375]
vej
 
             Vibrio furnissii
               Vibrio furnissii [TAX:903510]
vfu
 
             Vibrio nigripulchritudo
               Vibrio nigripulchritudo [TAX:28173]
vni
rep
             Vibrio anguillarum
               Vibrio anguillarum 775 [TAX:882102]
               Vibrio anguillarum M3 [TAX:882944]
               Vibrio anguillarum NB10 [TAX:55601]
van*
lag
vau
rep
 
 
             Vibrio coralliilyticus
               Vibrio coralliilyticus RE98 [TAX:190893]
               Vibrio coralliilyticus OCN014 [TAX:190893]
vcy
vct
 
rep
             Vibrio oreintalis group
               Vibrio tubiashii
                 Vibrio tubiashii [TAX:1051646]
vtu
rep
             Vibrio fluvialis
               Vibrio fluvialis [TAX:676]
vfl
rep
             Vibrio mimicus
               Vibrio mimicus [TAX:674]
vmi
 
             Vibrio breoganii
               Vibrio breoganii [TAX:553239]
vbr
rep
             Vibrio scophthalmi
               Vibrio scophthalmi [TAX:45658]
vsc
rep
           Aliivibrio
             Aliivibrio fischeri
               Aliivibrio fischeri ES114 [TAX:312309]
               Aiivibrio fischeri MJ11 [TAX:388396]
vfi*
vfm*
ref
 
             Aliivibrio salmonicida
               Aliivibrio salmonicida [TAX:316275]
vsa*
rep
             Aliivibrio wodanis
               Aliivibrio wodanis [TAX:80852]
awd
rep
           Photobacterium
             Photobacterium profundum
               Photobacterium profundum [TAX:298386]
ppr*
rep
             Photobacterium gaetbulicola
               Photobacterium gaetbulicola [TAX:658445]
pgb
rep
           Grimontia
             Grimontia hollisae
               Grimontia hollisae [TAX:673]
gho
rep
       Pseudomonadales
         Pseudomonadaceae
           Pseudomonas
             Pseudomonas aeruginosa
               Pseudomonas aeruginosa PAO1 [TAX:208964]
               Pseudomonas aeruginosa PAO1-VE13 [TAX:1367494]
               Pseudomonas aeruginosa PAO1-VE2 [TAX:1367493]
               Pseudomonas aeruginosa UCBPP-PA14 [TAX:208963]
               Pseudomonas aeruginosa PA7 [TAX:381754]
               Pseudomonas aeruginosa LESB58 [TAX:557722]
               Pseudomonas aeruginosa M18 [TAX:941193]
               Pseudomonas aeruginosa NCGM2.S1 [TAX:1089456]
               Pseudomonas aeruginosa NCGM 1900 [TAX:287]
               Pseudomonas aeruginosa DK2 [TAX:1093787]
               Pseudomonas aeruginosa B136-33 [TAX:1280938]
               Pseudomonas aeruginosa RP73 [TAX:1340851]
               Pseudomonas aeruginosa PA1 [TAX:1279007]
               Pseudomonas aeruginosa PA1R [TAX:1279008]
               Pseudomonas aeruginosa MTB-1 [TAX:1415629]
               Pseudomonas aeruginosa LES431 [TAX:1408272]
               Pseudomonas aeruginosa SCV20265 [TAX:1427342]
               Pseudomonas aeruginosa PA38182 [TAX:1407059]
               Pseudomonas aeruginosa YL84 [TAX:1448140]
               Pseudomonas aeruginosa c7447m [TAX:1352355]
               Pseudomonas aeruginosa PAO581 [TAX:1352354]
pae*
paev
paei
pau*
pap*
pag*
paf
pnc
paeb
pdk
psg
prp
paep
paer
paem
pael
paes
paeu
paeg
paec
paeo
ref
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
             Pseudomonas mendocina
               Pseudomonas mendocina ymp [TAX:399739]
               Pseudomonas mendocina NK-01 [TAX:1001585]
pmy*
pmk
rep
 
             Pseudomonas resinovorans
               Pseudomonas resinovorans [TAX:1245471]
pre
rep
             Pseudomonas oleovorans/pseudoalcaligenes group
               Pseudomonas pseudoalcaligenes
                 Pseudomonas pseudoalcaligenes [TAX:1182590]
ppse
 
             Pseudomonas alcaligenes
               Pseudomonas alcaligenes [TAX:43263]
palc
rep
             Pseudomonas citronellolis
               Pseudomonas citronellolis [TAX:53408]
pcq
 
             Pseudomonas putida
               Pseudomonas putida KT2440 [TAX:160488]
               Pseudomonas putida F1 [TAX:351746]
               Pseudomonas putida GB-1 [TAX:76869]
               Pseudomonas putida W619 [TAX:390235]
               Pseudomonas putida S16 [TAX:1042876]
               Pseudomonas putida BIRD-1 [TAX:931281]
               Pseudomonas putida ND6 [TAX:231023]
               Pseudomonas putida DOT-T1E [TAX:1196325]
               Pseudomonas putida HB3267 [TAX:1215088]
               Pseudomonas putida H8234 [TAX:1331671]
               Pseudomonas putida NBRC 14164 [TAX:1211579]
               Pseudomonas putida DLL-E4 [TAX:303]
ppu*
ppf
ppg
ppw
ppt
ppb
ppi
ppx
ppuh
pput
ppun
ppud
ref
 
 
 
 
 
 
 
 
 
 
 
             Pseudomonas fulva
               Pseudomonas fulva [TAX:743720]
pfv
rep
             Pseudomonas monteilii
               Pseudomonas monteilii SB3078 [TAX:1435044]
               Pseudomonas monteilii SB3101 [TAX:1435058]
pmon
pmot
 
 
             Pseudomonas mosselii
               Pseudomonas mosselii [TAX:1388763]
pmos
 
             Pseudomonas plecoglossicida
               Pseudomonas plecoglossicida [TAX:70775]
ppj
 
             Pseudomonas oryzihabitans
               Pseudomonas oryzihabitans [TAX:47885]
por
rep
             Pseudomonas syringae group genomosp. 3
               Pseudomonas syringae pv. tomato DC3000 [TAX:223283]
pst*
ref
             Pseudomonas syringae
               Pseudomonas syringae pv. syringae B728a [TAX:205918]
               Pseudomonas syringae CC1557 [TAX:1357279]
psb*
psyr
ref
 
             Pseudomonas savastanoi
               Pseudomonas savastanoi pv. phaseolicola 1448A [TAX:264730]
psp*
 
             Pseudomonas cichorii
               Pseudomonas cichorii [TAX:1441629]
pci
 
             Pseudomonas protegens
               Pseudomonas protegens Pf-5 [TAX:220664]
               Pseudomonas protegens CHA0 [TAX:1124983]
               Pseudomonas protegens Cab57 [TAX:1420599]
pfl*
pprc
ppro
 
rep
 
             Pseudomonas fluorescens
               Pseudomonas fluorescens Pf0-1 [TAX:205922]
               Pseudomonas fluorescens SBW25 [TAX:216595]
               Pseudomonas fluorescens F113 [TAX:1114970]
               Pseudomonas fluorescens A506 [TAX:1037911]
               Pseudomonas fluorescens UK4 [TAX:294]
               Pseudomonas fluorescens PCL1751 [TAX:294]
               Pseudomonas fluorescens LBUM223 [TAX:294]
               Pseudomonas fluorescens PICF7 [TAX:1334632]
               Pseudomonas fluorescens L228 [TAX:294]
pfo*
pfs*
pfe
pfc
pfn
pfw
pfb
pff
pfx
 
 
rep
 
 
 
 
 
rep
             Pseudomonas poae
               Pseudomonas poae [TAX:1282356]
ppz
 
             Pseudomonas mandelii
               Pseudomonas mandelii [TAX:1147786]
pman
 
             Pseudomonas trivialis
               Pseudomonas trivialis [TAX:200450]
ptv
 
             Pseudomonas entomophila
               Pseudomonas entomophila [TAX:384676]
pen*
rep
             Pseudomonas stutzeri
               Pseudomonas stutzeri A1501 [TAX:379731]
               Pseudomonas stutzeri ATCC 17588 [TAX:96563]
               Pseudomonas stutzeri DSM 4166 [TAX:996285]
               Pseudomonas stutzeri CCUG 29243 [TAX:1196835]
               Pseudomonas stutzeri DSM 10701 [TAX:1123519]
               Pseudomonas stutzeri RCH2 [TAX:644801]
               Pseudomonas stutzeri 19SMN4 [TAX:316]
               Pseudomonas stutzeri 28a24 [TAX:316]
psa*
psz
psr
psc
psj
psh
pstu
pstt
 
 
 
 
 
 
 
rep
             Pseudomonas balearica
               Pseudomonas balearica [TAX:1123016]
pbm
 
             Pseudomonas brassicacearum
               Pseudomonas brassicacearum subsp. brassicacearum NFM421 [TAX:994484]
               Pseudomonas brassicacearum DF41 [TAX:930166]
pba
pbc
 
 
             Pseudomonas sp. UW4
               Pseudomonas sp. UW4 [TAX:1207075]
ppuu
 
             Pseudomonas denitrificans
               Pseudomonas denitrificans [TAX:1294143]
pdr
rep
             Pseudomonas sp. VLB120
               Pseudomonas sp. VLB120 [TAX:69328]
psv
 
             Pseudomonas sp. TKP
               Pseudomonas sp. TKP [TAX:1415630]
psk
 
             Pseudomonas knackmussii
               Pseudomonas knackmussii [TAX:1301098]
pkc
rep
             Pseudomonas chlororaphis
               Pseudomonas chlororaphis PA23 [TAX:587753]
               Pseudomonas chlororaphis PCL1606 [TAX:587753]
               Pseudomonas chlororaphis subsp. aurantiaca [TAX:86192]
pch
pcz
pcp
 
 
 
             Pseudomonas fragi
               Pseudomonas fragi [TAX:296]
pfz
rep
             Pseudomonas alkylphenolica
               Pseudomonas alkylphenolia [TAX:237609]
palk
rep
             Pseudomonas rhizosphaerae
               Pseudomonas rhizosphaerae [TAX:216142]
prh
rep
             Pseudomonas cremoricolorata
               Pseudomonas cremoricolorata [TAX:157783]
psw
rep
             Pseudomonas parafulva
               Pseudomonas parafulva [TAX:157782]
ppv
 
             Pseudomonas sp. StFLB209
               Pseudomonas sp. StFLB209 [TAX:1028989]
pses
 
             Pseudomonas sp. MRSN12121
               Pseudomonas sp. MRSN12121 [TAX:1611770]
psem
 
             Pseudomonas sp. CCOS 191
               Pseudomonas sp. CCOS 191 [TAX:1649877]
psec
 
             Pseudomonas psychrophila
               Pseudomonas psychrophila [TAX:122355]
ppsy
 
             Pseudomonas sp. Os17
               Pseudomonas sp. Os17 [TAX:1500686]
psos
 
             Pseudomonas koreensis
               Pseudomonas koreensis [TAX:198620]
pkr
rep
             Pseudomonas saudiphocaensis
               Pseudomonas saudiphocaensis [TAX:1499686]
 
rep
           Azotobacter
             Azotobacter vinelandii
               Azotobacter vinelandii DJ [TAX:322710]
               Azotobacter vinelandii CA [TAX:1283330]
               Azotobacter vinelandii CA6 [TAX:1283331]
avn*
avl
avd
rep
 
 
             Azotobacter chroococcum
               Azotobacter chroococcum [TAX:1328314]
acx
 
           Oblitimonas
             Oblitimonas alkaliphila
               Oblitimonas alkaliphila [TAX:1697053]
pbb
rep
         Moraxellaceae
           Psychrobacter
             Psychrobacter arcticus
               Psychrobacter arcticus [TAX:259536]
par*
rep
             Psychrobacter cryohalolentis
               Psychrobacter cryohalolentis [TAX:335284]
pcr*
 
             Psychrobacter sp. PRwf-1
               Psychrobacter sp. PRwf-1 [TAX:349106]
prw*
 
             Psychrobacter sp. G
               Psychrobacter sp. G [TAX:571800]
pso
 
             Psychrobacter urativorans
               Psychrobacter urativorans [TAX:45610]
pur
 
             Psychrobacter alimentarius
               Psychrobacter alimentarius [TAX:261164]
pali
rep
             Psychrobacter sp. P2G3
               Psychrobacter sp. P2G3 [TAX:1699622]
pspg
 
             Psychrobacter sp. P11G5
               Psychrobacter sp. P11G5 [TAX:1699624]
psyg
 
             Psychrobacter sp. DAB_AL43B
               Psychrobacter sp. DAB_AL43B [TAX:1028416]
psyc
 
           Acinetobacter
             Acinetobacter calcoaceticus/baumannii complex
               Acinetobacter baumannii
                 Acinetobacter baumannii ATCC 17978 [TAX:400667]
                 Acinetobacter baumannii SDF [TAX:509170]
                 Acinetobacter baumannii AYE [TAX:509173]
                 Acinetobacter baumannii ACICU [TAX:405416]
                 Acinetobacter baumannii AB0057 [TAX:480119]
                 Acinetobacter baumannii AB307-0294 [TAX:557600]
                 Acinetobacter baumannii 1656-2 [TAX:696749]
                 Acinetobacter baumannii MDR-ZJ06 [TAX:497978]
                 Acinetobacter baumannii MDR-TJ [TAX:889738]
                 Acinetobacter baumannii TCDC-AB0715 [TAX:980514]
                 Acinetobacter baumannii TYTH-1 [TAX:1100841]
                 Acinetobacter baumannii D1279779 [TAX:945556]
                 Acinetobacter baumannii BJAB07104 [TAX:1096995]
                 Acinetobacter baumannii BJAB0715 [TAX:1096996]
                 Acinetobacter baumannii BJAB0868 [TAX:1096997]
                 Acinetobacter baumannii ZW85-1 [TAX:1400867]
                 Acinetobacter baumannii AbH12O-A2 [TAX:470]
                 Acinetobacter baumannii AB030 [TAX:470]
                 Acinetobacter baumannii AB031 [TAX:470]
                 Acinetobacter baumannii AC29 [TAX:470]
                 Acinetobacter baumannii LAC-4 [TAX:1455315]
acb*
abm*
aby*
abc*
abn*
abb*
abx
abz
abr
abd
abh
abad
abj
abab
abaj
abaz
abk
abau
abaa
abw
abal
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
rep
 
 
 
               Acinetobacter pittii
                 Acinetobacter pittii [TAX:871585]
acc
ref
               Acinetobacter nosocomialis
                 Acinetobacter nosocomialis [TAX:106654]
ano
 
             Acinetobacter oleivorans
               Acinetobacter oleivorans [TAX:436717]
acd
 
             Acinetobacter sp. ADP1
               Acinetobacter sp. ADP1 [TAX:62977]
aci*
 
             Acinetobacter sp. TTH0-4
               Acinetobacter sp. TTH0-4 [TAX:1646498]
att
 
             Acinetobacter equi
               Acinetobacter equi [TAX:1324350]
aei
rep
             Acinetobacter johnsonii
               Acinetobacter johnsonii [TAX:1242245]
ajo
rep
             Acinetobacter sp. DUT-2
               Acinetobacter sp. DUT-2 [TAX:1809055]
acw
 
             Acinetobacter sp. TGL-Y2
               Acinetobacter sp. TGL-Y2 [TAX:1407071]
acv
 
             Acinetobacter haemolyticus
               Acinetobacter haemolyticus [TAX:29430]
ahl
 
             Acinetobacter junii
               Acinetobacter junii [TAX:40215]
ajn
rep
             Acinetobacter soli
               Acinetobacter soli [TAX:487316]
asol
rep
             Acinetobacter larvae
               Acinetobacter larvae [TAX:1789224]
ala
 
           Moraxella
             Moraxella catarrhalis
               Moraxella catarrhalis BBH18 [TAX:1236608]
               Moraxella catarrhalis 25240 [TAX:480]
               Moraxella catarrhalis 25239 [TAX:480]
mct*
mcs
mcat
rep
 
 
             Moraxella ovis
               Moraxella ovis [TAX:29433]
moi
rep
             Moraxella osloensis
               Moraxella osloensis [TAX:34062]
mos
rep
             Moraxella bovoculi
               Moraxella bovoculi [TAX:386891]
mbl
 
       Alteromonadales
         Shewanellaceae
           Shewanella
             Shewanella oneidensis
               Shewanella oneidensis [TAX:211586]
son*
ref
             Shewanella denitrificans
               Shewanella denitrificans [TAX:318161]
sdn*
rep
             Shewanella frigidimarina
               Shewanella frigidimarina [TAX:318167]
sfr*
rep
             Shewanella amazonensis
               Shewanella amazonensis [TAX:326297]
saz*
rep
             Shewanella baltica
               Shewanella baltica OS155 [TAX:325240]
               Shewanella baltica OS185 [TAX:402882]
               Shewanella baltica OS195 [TAX:399599]
               Shewanella baltica OS223 [TAX:407976]
               Shewanella baltica OS678 [TAX:693973]
               Shewanella baltica OS117 [TAX:693970]
               Shewanella baltica BA175 [TAX:693974]
sbl*
sbm*
sbn*
sbp*
sbt
sbs
sbb
 
 
 
 
rep
 
 
             Shewanella loihica
               Shewanella loihica [TAX:323850]
slo*
rep
             Shewanella putrefaciens
               Shewanella putrefaciens CN-32 [TAX:319224]
               Shewanella putrefaciens 200 [TAX:399804]
spc*
shp
 
 
             Shewanella sediminis
               Shewanella sediminis [TAX:425104]
sse*
rep
             Shewanella pealeana
               Shewanella pealeana [TAX:398579]
spl*
rep
             Shewanella sp. MR-4
               Shewanella sp. MR-4 [TAX:60480]
she*
 
             Shewanella sp. MR-7
               Shewanella sp. MR-7 [TAX:60481]
shm*
 
             Shewanella sp. ANA-3
               Shewanella sp. ANA-3 [TAX:94122]
shn*
 
             Shewanella sp. W3-18-1
               Shewanella sp. W3-18-1 [TAX:351745]
shw*
 
             Shewanella halifaxensis
               Shewanella halifaxensis [TAX:458817]
shl*
 
             Shewanella woodyi
               Shewanella woodyi [TAX:392500]
swd*
rep
             Shewanella piezotolerans
               Shewanella piezotolerans [TAX:225849]
swp*
rep
             Shewanella violacea
               Shewanella violacea [TAX:637905]
svo*
rep
         Idiomarinaceae
           Idiomarina
             Idiomarina loihiensis
               Idiomarina loihiensis L2TR [TAX:283942]
               Idiomarina loihiensis GSL 199 [TAX:1321370]
ilo*
ili
rep
 
         Colwelliaceae
           Colwellia
             Colwellia psychrerythraea
               Colwellia psychrerythraea [TAX:167879]
cps*
rep
             Colwellia sp. MT41
               Colwellia sp. MT41 [TAX:58049]
com
 
             Colwellia sp. PAMC 20917
               Colwellia sp. PAMC 20917 [TAX:1816218]
coz
 
         Pseudoalteromonadaceae
           Pseudoalteromonas
             Pseudoalteromonas haloplanktis
               Pseudoalteromonas haloplanktis [TAX:326442]
pha*
 
             Pseudoalteromonas atlantica
               Pseudoalteromonas atlantica [TAX:342610]
pat*
rep
             Pseudoalteromonas sp. SM9913
               Pseudoalteromonas sp. SM9913 [TAX:234831]
psm
 
             Pseudoalteromonas sp. OCN003
               Pseudoalteromonas sp. OCN003 [TAX:1348114]
pseo
 
             Pseudoalteromonas issachenkonii
               Pseudoalteromonas issachenkonii [TAX:152297]
pia
 
             Pseudoalteromonas phenolica
               Pseudoalteromonas phenolica [TAX:161398]
pphe
rep
             Pseudoalteromonas sp. Bsw20308
               Pseudoalteromonas sp. Bsw20308 [TAX:283699]
pbw
 
             Pseudoalteromonas rubra
               Pseudoalteromonas rubra [TAX:43658]
prr
rep
             Pseudoalteromonas translucida
               Pseudoalteromonas translucida [TAX:1315283]
ptn
rep
             Pseudoalteromonas luteoviolacea
               Pseudoalteromonas luteoviolacea [TAX:43657]
plz
rep
         Alteromonadaceae
           Marinobacter
             Marinobacter hydrocarbonoclasticus
               Marinobacter hydrocarbonoclasticus VT8 [TAX:351348]
               Marinobacter hydrocarbonoclasticus ATCC 49840 [TAX:1163748]
maq*
mhc
 
rep
             Marinobacter adhaerens
               Marinobacter adhaerens [TAX:225937]
mad
rep
             Marinobacter sp. BSs20148
               Marinobacter sp. BSs20148 [TAX:490759]
mbs
 
             Marinobacter salarius
               Marinobacter salarius [TAX:1420917]
msr
rep
             Marinobacter similis
               Marinobacter similis [TAX:1420916]
msx
rep
             Marinobacter psychrophilus
               Marinobacter psychrophilus [TAX:330734]
mpq
rep
             Marinobacter sp. CP1
               Marinobacter sp. CP1 [TAX:1671721]
mari
 
             Marinobacter sp. LQ44
               Marinobacter sp. LQ44 [TAX:1749259]
mlq
 
           Alteromonas
             Alteromonas mediterranea
               Alteromonas mediterranea DE [TAX:314275]
               Alteromonas mediterranea 615 [TAX:1300253]
               Alteromonas mediterranea DE1 [TAX:1004786]
               Alteromonas mediterranea U4 [TAX:1300255]
               Alteromonas mediterranea U7 [TAX:1300256]
               Alteromonas mediterranea U8 [TAX:1300257]
               Alteromonas mediterranea UM4b [TAX:1300259]
               Alteromonas mediterranea UM7 [TAX:1300258]
               Alteromonas mediterranea MED64 [TAX:1300254]
amc*
amh
amaa
amal
amae
amao
amad
amai
amag
 
 
 
 
 
 
 
 
 
             Alteromonas macleodii
               Alteromonas macleodii ATCC 27126 [TAX:529120]
               Alteromonas macleodii Balearic Sea AD45 [TAX:1004787]
               Alteromonas macleodii English Channel 673 [TAX:1004788]
               Alteromonas macleodii Black Sea 11 [TAX:1004785]
amac
amb
amg
amk
rep
 
 
 
             Alteromonas naphthalenivorans
               Alteromonas naphthalenivorans [TAX:715451]
alt
 
             Alteromonas australica
               Alteromonas australica H 17 [TAX:589873]
               Alteromonas australica DE170 [TAX:589873]
aal
aaus
rep
 
             Alteromonas stellipolaris
               Alteromonas stellipolaris LMG 21856 [TAX:1160720]
               Alteromonas stellipolaris LMG 21861 [TAX:233316]
asp
asq
 
rep
             Alteromonas addita
               Alteromonas addita [TAX:287094]
aaw
 
           Glaciecola
             Glaciecola sp. 4H-3-7+YE-5
               Glaciecola sp. 4H-3-7+YE-5 [TAX:983545]
gag*
 
             Glaciecola nitratireducens
               Glaciecola nitratireducens [TAX:1085623]
gni
rep
           Paraglaciecola
             Paraglaciecola psychrophila
               Paraglaciecola psychrophila [TAX:1129794]
gps
rep
           Lacimicrobium
             Lacimicrobium alkaliphilum
               Lacimicrobium alkaliphilum [TAX:1526571]
lal
 
           Agarivorans
             Agarivorans gilvus
               Agarivorans gilvus [TAX:680279]
 
rep
         Psychromonadaceae
           Psychromonas
             Psychromonas ingrahamii
               Psychromonas ingrahamii [TAX:357804]
pin*
rep
             Psychromonas sp. CNPT3
               Psychromonas sp. CNPT3 [TAX:314282]
psy
 
         Ferrimonadaceae
           Ferrimonas
             Ferrimonas balearica
               Ferrimonas balearica [TAX:550540]
fbl*
rep
         Moritellaceae
           Moritella
             Moritella viscosa
               Moritella viscosa [TAX:80854]
mvs
rep
       Cellvibrionales
         Cellvibrionaceae
           Cellvibrio
             Cellvibrio japonicus
               Cellvibrio japonicus [TAX:498211]
cja*
rep
             Cellvibrio sp. PSBB023
               Cellvibrio sp. PSBB023 [TAX:1945512]
ceb
 
           Saccharophagus
             Saccharophagus degradans
               Saccharophagus degradans [TAX:203122]
sde*
rep
           Teredinibacter
             Teredinibacter turnerae
               Teredinibacter turnerae [TAX:377629]
ttu*
rep
           Simiduia
             Simiduia agarivorans
               Simiduia agarivorans [TAX:1117647]
saga
rep
         Spongiibacteraceae
           Spongiibacter
             Spongiibacter sp. IMCC21906
               Spongiibacter sp. IMCC21906 [TAX:1620392]
spoi
 
           Zhongshania
             Zhongshania aliphaticivorans
               Zhongshania aliphaticivorans [TAX:1470434]
zal
rep
         Microbulbiferaceae
           Microbulbifer
             Microbulbifer thermotolerans
               Microbulbifer thermotolerans [TAX:252514]
mthd
 
             Microbulbifer sp. CCB-MM1
               Microbulbifer sp. CCB-MM1 [TAX:1769779]
micc
 
             Microbulbifer agarilyticus
               Microbulbifer agarilyticus [TAX:260552]
maga
 
         Halieaceae
           Halioglobus
             Halioglobus japonicus
               Halioglobus japonicus [TAX:930805]
hja
 
           Congregibacter
             Congregibacter litoralis
               Congregibacter litoralis KT71 [TAX:314285]
 
rep
       Legionellales
         Coxiellaceae
           Coxiella
             Coxiella burnetii
               Coxiella burnetii RSA 493 [TAX:227377]
               Coxiella burnetii RSA 331 [TAX:360115]
               Coxiella burnetii Dugway 5J108-111 [TAX:434922]
               Coxiella burnetii CbuG_Q212 [TAX:434923]
               Coxiella burnetii CbuK_Q154 [TAX:434924]
cbu*
cbs*
cbd*
cbg*
cbc*
ref
 
rep
 
 
             Coxiella endosymbiont of Amblyomma americanum
               Coxiella endosymbiont of Amblyomma americanum [TAX:325775]
cea
rep
           Coxiella-like endosymbiont
             Coxiella-like endosymbiont [TAX:1592897]
cey
rep
         Legionellaceae
           Legionella
             Legionella pneumophila
               Legionella pneumophila subsp. pneumophila Philadelphia 1 [TAX:272624]
               Legionella pneumophila subsp. pneumophila HL06041035 [TAX:91891]
               Legionella pneumophila subsp. pneumophila Lorraine [TAX:91891]
               Legionella pneumophila subsp. pneumophila LPE509 [TAX:1312904]
               Legionella pneumophila subsp. pneumophila Thunder Bay [TAX:1199191]
               Legionella pneumophila Lens [TAX:297245]
               Legionella pneumophila Paris [TAX:297246]
               Legionella pneumophila Corby [TAX:400673]
               Legionella pneumophila 2300/99 Alcoy [TAX:423212]
               Legionella pneumophila subsp. pneumophila ATCC 43290 [TAX:933093]
lpn*
lph
lpo
lpu
lpm
lpf*
lpp*
lpc*
lpa*
lpe
ref
 
 
 
 
 
 
 
 
 
             Legionella longbeachae
               Legionella longbeachae [TAX:661367]
llo*
rep
             Legionella fallonii
               Legionella fallonii [TAX:1212491]
lfa
rep
             Legionella hackeliae
               Legionella hackeliae [TAX:449]
lha
rep
             Legionella oakridgensis
               Legionella oakridgensis [TAX:1268635]
lok
rep
           Tatlockia
             Tatlockia micdadei
               Tatlockia micdadei [TAX:451]
tmc
rep
           Fluoribacter
             Fluoribacter dumoffii
               Fluoribacter dumoffii NY 23 [TAX:1094715]
 
rep
       Methylococcales
         Methylococcaceae
           Methylococcus
             Methylococcus capsulatus
               Methylococcus capsulatus [TAX:243233]
mca*
rep
           Methylomonas
             Methylomonas methanica
               Methylomonas methanica [TAX:857087]
mmt*
rep
             Methylomonas denitrificans
               Methylomonas denitrificans [TAX:1538553]
mdn
rep
             Methylomonas sp. DH-1
               Methylomonas sp. DH-1 [TAX:1727196]
mdh
 
           Methylomicrobium
             Methylomicrobium alcaliphilum
               Methylomicrobium alcaliphilum [TAX:1091494]
mah*
rep
       Thiotrichales
         Francisellaceae
           Francisella
             Francisella tularensis
               Francisella tularensis subsp. tularensis SCHU S4 [TAX:177416]
               Francisella tularensis subsp. tularensis SCHU S4 NR-28534 [TAX:1341656]
               Francisella tularensis subsp. tularensis FSC198 [TAX:393115]
               Francisella tularensis subsp. tularensis WY96-3418 [TAX:418136]
               Francisella tularensis subsp. tularensis NE061598 [TAX:510831]
               Francisella tularensis subsp. tularensis TI0902 [TAX:1001534]
               Francisella tularensis subsp. tularensis WY96 [TAX:119856]
               Francisella tularensis TIGB03 [TAX:1001542]
               Francisella tularensis subsp. holarctica LVS [TAX:376619]
               Francisella tularensis subsp. holarctica OSU18 [TAX:393011]
               Francisella tularensis subsp. holarctica FTNF002-00 [TAX:458234]
               Francisella tularensis subsp. holarctica F92 [TAX:1232394]
               Francisella tularensis subsp. holarctica FSC200 [TAX:351581]
               Francisella tularensis subsp. holarctica PHIT-FT049 [TAX:1432652]
               Francisella tularensis subsp. holarctica FTT_1 [TAX:119857]
               Francisella tularensis subsp. holarctica VT68 [TAX:119857]
               Francisella tularensis subsp. holarctica 425 [TAX:119857]
               Francisella tularensis subsp. mediasiatica FSC147 [TAX:441952]
               Francisella tularensis subsp. novicida U112 [TAX:401614]
               Francisella tularensis subsp. novicida U112 [TAX:401614]
               Francisella tularensis subsp. novicida F6168 [TAX:1452728]
               Francisella cf. novicida Fx1 [TAX:984129]
               Francisella cf. tularensis subsp. novicida 3523 [TAX:676032]
ftu*
ftq
ftf*
ftw*
ftr
ftt
fty
ftg
ftl*
fth*
fta*
fts
fti
fto
ftc
ftv
ftz
ftm*
ftn*
ftx
ftd
fcf
fcn
ref
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
             Francisella philomiragia
               Francisella philomiragia subsp. philomiragia ATCC 25017 [TAX:484022]
               Francisella philomiragia subsp. philomiragia ATCC 25015 O#319L [TAX:539329]
               Francisella philomiragia O#319-029 [TAX:28110]
               Francisella philomiragia O#319-036 [TAX:28110]
               Francisella philomiragia O#319-067 [TAX:28110]
               Francisella philomiragia GA01-2794 [TAX:28110]
               Francisella philomiragia GA01-2801 [TAX:28110]
fph*
fpt
fpi
fpm
fpx
fpz
fpj
rep
 
 
 
 
 
 
             Francisella sp. TX077308
               Francisella sp. TX077308 [TAX:573569]
frt
 
             Francisella noatunensis
               Francisella noatunensis subsp. orientalis Toba 04 [TAX:1163389]
               Francisella noatunensis subsp. orientalis LADL--07-285A [TAX:1356861]
fna
fnl
 
 
             Francisella sp. FSC1006
               Francisella sp. FSC1006 [TAX:1547445]
frf
 
             Francisella persica
               Francisella persica [TAX:1086726]
fper
 
             Francisella hispaniensis
               Francisella hispaniensis [TAX:1088883]
fhi
 
           Allofrancisella
             Allofrancisella guangzhouensis
               Allofrancisella guangzhouensis [TAX:594679]
fgu
rep
         Piscirickettsiaceae
           Thiomicrospira
             Thiomicrospira crunogena
               Thiomicrospira crunogena [TAX:317025]
tcx*
rep
           Thioalkalimicrobium
             Thioalkalimicrobium cyclicum
               Thioalkalimicrobium cyclicum [TAX:717773]
tcy*
rep
             Thioalkalimicrobium aerophilum
               Thioalkalimicrobium aerophilum [TAX:717772]
tao
rep
           Methylophaga
             Methylophaga nitratireducenticrescens
               Methylophaga nitratireducenticrescens [TAX:754476]
mej
rep
             Methylophaga frappieri
               Methylophaga frappieri [TAX:754477]
mec
rep
           Cycloclasticus
             Cycloclasticus sp. P1
               Cycloclasticus sp. P1 [TAX:385025]
cyq
 
             Cycloclasticus zancles
               Cycloclasticus zancles [TAX:1198232]
cza
 
           Piscirickettsia
             Piscirickettsia salmonis
               Piscirickettsia salmonis [TAX:1227812]
psal
rep
         Thiotrichaceae
           Thioploca
             Thioploca ingrica
               Thioploca ingrica [TAX:40754]
tig
rep
           Beggiatoa
             Beggiatoa leptomitiformis
               Beggiatoa leptomitiformis [TAX:319938]
blep
 
       Chromatiales
         Chromatiaceae
           Nitrosococcus
             Nitrosococcus oceani
               Nitrosococcus oceani [TAX:323261]
noc*
rep
             Nitrosococcus halophilus
               Nitrosococcus halophilus [TAX:472759]
nhl*
rep
             Nitrosococcus watsonii
               Nitrosococcus watsonii [TAX:105559]
nwa
rep
           Allochromatium
             Allochromatium vinosum
               Allochromatium vinosum [TAX:572477]
alv*
rep
           Thiocystis
             Thiocystis violascens
               Thiocystis violascens [TAX:765911]
tvi
rep
           Thioflavicoccus
             Thioflavicoccus mobilis
               Thioflavicoccus mobilis [TAX:765912]
tmb
rep
           Marichromatium
             Marichromatium purpuratum
               Marichromatium purpuratum [TAX:765910]
mpur
rep
           Candidatus Tenderia
             Candidatus Tenderia electrophaga
               Candidatus Tenderia electrophaga [TAX:1748243]
tee
 
         Ectothiorhodospiraceae
           Alkalilimnicola
             Alkalilimnicola ehrlichii
               Alkalilimnicola ehrlichii [TAX:187272]
aeh*
rep
           Halorhodospira
             Halorhodospira halophila
               Halorhodospira halophila [TAX:349124]
hha*
rep
             Halorhodospira halochloris
               Halorhodospira halochloris [TAX:1354791]
hhc
 
           Thioalkalivibrio
             Thioalkalivibrio sulfidiphilus
               Thioalkalivibrio sulfidiphilus [TAX:396588]
tgr*
rep
             Thioalkalivibrio sp. K90mix
               Thioalkalivibrio sp. K90mix [TAX:396595]
tkm*
 
             Thioalkalivibrio nitratireducens
               Thioalkalivibrio nitratireducens [TAX:1255043]
tni
rep
             Thioalkalivibrio thiocyanoxidans
               Thioalkalivibrio thiocyanoxidans [TAX:713587]
tti
rep
             Thioalkalivibrio versutus
               Thioalkalivibrio versutus [TAX:106634]
tvr
rep
           Spiribacter
             Spiribacter salinus
               Spiribacter salinus [TAX:1260251]
ssal
rep
             Spiribacter curvatus
               Spiribacter sp. UAH-SP71 [TAX:1335757]
spiu
rep
           Ectothiorhodospira
             Ectothiorhodospira sp. BSL-9
               Ectothiorhodospira sp. BSL-9 [TAX:1442136]
ebs
 
           Acidihalobacter
             Acidihalobacter prosperus
               Acidihalobacter prosperus [TAX:160660]
aprs
 
         Halothiobacillaceae
           Halothiobacillus
             Halothiobacillus neapolitanus
               Halothiobacillus neapolitanus [TAX:555778]
hna*
rep
             Halothiobacillus sp. LS2
               Halothiobacillus sp. LS2 [TAX:1860122]
haz
 
         Wenzhouxiangellaceae
           Wenzhouxiangella
             Wenzhouxiangella marina
               Wenzhouxiangella marina [TAX:1579979]
wma
rep
         Woeseiaceae
           Woeseia
             Woeseia oceani
               Woeseia oceani [TAX:1548547]
woc
 
       Oceanospirillales
         Hahellaceae
           Hahella
             Hahella chejuensis
               Hahella chejuensis [TAX:349521]
hch*
rep
           Endozoicomonas
             Endozoicomonas montiporae
               Endozoicomonas montiporae CL-33 [TAX:570277]
 
rep
         Halomonadaceae
           Chromohalobacter
             Chromohalobacter salexigens
               Chromohalobacter salexigens [TAX:290398]
csa*
rep
           Halomonas
             Halomonas elongata
               Halomonas elongata [TAX:768066]
hel*
rep
             Halomonas campaniensis
               Halomonas campaniensis [TAX:213554]
hcs
rep
             Halomonas sp. KO116
               Halomonas sp. KO116 [TAX:1504981]
hak
 
             Halomonas sp. R57-5
               Halomonas sp. R57-5 [TAX:1610576]
ham
 
             Halomonas huangheensis
               Halomonas huangheensis [TAX:1178482]
hhu
rep
             Halomonas chromatireducens
               Halomonas chromatireducens [TAX:507626]
hco
 
           Zymobacter group
             whitefly endosymbionts
               Candidatus Portiera
                 Candidatus Portiera aleyrodidarum
                   Candidatus Portiera aleyrodidarum BT-B [TAX:1206109]
                   Candidatus Portiera aleyrodidarum BT-B-HRs [TAX:1206109]
                   Candidatus Portiera aleyrodidarum BT-QVLC [TAX:1239881]
                   Candidatus Portiera aleyrodidarum BT-QVLC [TAX:1239881]
                   Candidatus Portiera aleyrodidarum TV [TAX:1297582]
                   Candidatus Portiera aleyrodidarum TV-BCN [TAX:91844]
                   Candidatus Portiera aleyrodidarum AD-CAI [TAX:91844]
                   Candidatus Portiera aleyrodidarum AF-CAI [TAX:91844]
                   Candidatus Portiera aleyrodidarum MED [TAX:1163752]
ple
ply
plr
plo
pld
plb
plc
pli
paly
 
rep
 
 
 
 
 
 
 
             Candidatus Carsonella
               Candidatus Carsonella ruddii
                 Candidatus Carsonella ruddii PV (Pachypsylla venusta) [TAX:387662]
                 Candidatus Carsonella ruddii CE (Ctenarytaina eucalypti) [TAX:1202536]
                 Candidatus Carsonella ruddii CS (Ctenarytaina spatulata) [TAX:1202537]
                 Candidatus Carsonella ruddii HT (Heteropsylla texana) [TAX:1202539]
                 Candidatus Carsonella ruddii HC (Heteropsylla cubana) [TAX:1202538]
                 Candidatus Carsonella ruddii PC (Pachypsylla celtidis) [TAX:1202540]
                 Candidatus Carsonella ruddii DC (Diaphorina citri) [TAX:667013]
crp*
cru
crc
crt
crh
crv
cri
 
 
 
 
 
 
 
             Candidatus Evansia
               Candidatus Evansia muelleri
                 Candidatus Evansia muelleri [TAX:1495769]
eme
rep
           Halotalea
             Halotalea alkalilenta
               Halotalea alkalilenta [TAX:376489]
haa
rep
         Alcanivoracaceae
           Alcanivorax
             Alcanivorax borkumensis
               Alcanivorax borkumensis [TAX:393595]
abo*
rep
             Alcanivorax dieselolei
               Alcanivorax dieselolei [TAX:930169]
adi
rep
             Alcanivorax pacificus
               Alcanivorax pacificus [TAX:391936]
apac
rep
             Alcanivorax sp. NBRC 101098
               Alcanivorax sp. NBRC [TAX:1113728]
aln
 
         Kangiellaceae
           Kangiella
             Kangiella koreensis
               Kangiella koreensis [TAX:523791]
kko*
rep
             Kangiella geojedonensis
               Kangiella geojedonensis [TAX:914150]
kge
rep
             Kangiella sediminilitoris
               Kangiella sediminilitoris [TAX:1144748]
ksd
 
         Marinomonas
           Marinomonas sp. MWYL1
             Marinomonas sp. MWYL1 [TAX:400668]
mmw*
 
           Marinomonas mediterranea
             Marinomonas mediterranea [TAX:717774]
mme
rep
           Marinomonas posidonica
             Marinomonas posidonica [TAX:491952]
mpc
rep
         Thalassolituus
           Thalassolituus oleivorans
             Thalassolituus oleivorans MIL-1 [TAX:1298593]
             Thalassolituus oleivorans R6-15 [TAX:1208320]
tol
tor
rep
 
         Oleispira
           Oleispira antarctica
             Oleispira antarctica [TAX:698738]
oai
rep
         Marinobacterium
           Marinobacterium sp. ST58-10
             Marinobacterium sp. ST58-10 [TAX:1821621]
mars
 
         Saccharospirillaceae
           Gynuella
             Gynuella sunshinyii
               Gynuella sunshinyii [TAX:1445510]
gsn
rep
       Aeromonadales
         Aeromonadaceae
           Aeromonas
             Aeromonas hydrophila
               Aeromonas hydrophila subsp. hydrophila ATCC 7966 [TAX:380703]
               Aeromonas hydrophila ML09-119 [TAX:1288394]
               Aeromonas hydrophila YL17 [TAX:1448139]
               Aeromonas hydrophila AL09-71 [TAX:1418110]
               Aeromonas hydrophila pc104A [TAX:1418107]
               Aeromonas hydrophila J-1 [TAX:1419584]
               Aeromonas hydrophila AL06-06 [TAX:644]
               Aeromonas hydrophila AH10 [TAX:644]
aha*
ahy
ahd
ahr
ahp
ahj
ahh
ahi
ref
 
 
 
 
 
 
 
             Aeromonas salmonicida
               Aeromonas salmonicida [TAX:382245]
asa*
rep
             Aeromonas veronii
               Aeromonas veronii B565 [TAX:998088]
               Aeromonas veronii TH0426 [TAX:654]
avr
avo
 
rep
             Aeromonas media
               Aeromonas media [TAX:1208104]
amed
 
             Aeromonas schubertii
               Aeromonas schubertii [TAX:652]
asr
rep
             Aeromonas aquatica
               Aeromonas aquatica [TAX:558964]
aaj
 
           Tolumonas
             Tolumonas auensis
               Tolumonas auensis [TAX:595494]
tau*
rep
           Oceanimonas
             Oceanimonas sp. GK1
               Oceanimonas sp. GK1 [TAX:511062]
oce
 
       Cardiobacteriales
         Cardiobacteriaceae
           Dichelobacter
             Dichelobacter nodosus
               Dichelobacter nodosus [TAX:246195]
dno*
rep
       Orbales
         Orbaceae
           Gilliamella
             Gilliamella apicola
               Gilliamella apicola [TAX:1196095]
gap
rep
           Frischella
             Frischella perrara
               Frischella perrara [TAX:1267021]
fpp
rep
       Nevskiales
         Sinobacteraceae
           Steroidobacter
             Steroidobacter denitrificans
               Steroidobacter denitrificans [TAX:465721]
sdf
 
       Immundisolibacterales
         Immundisolibacteraceae
           Immundisolibacter
             Immundisolibacter cernigliae
               Immundisolibacter cernigliae [TAX:1810504]
gbi
 
       Candidatus Baumannia
         Candidatus Baumannia cicadellinicola
           Baumannia cicadellinicola Hc (Homalodisca coagulata) [TAX:374463]
           Candidatus Baumannia cicadellinicola BGSS [TAX:186490]
           Candidatus Baumannia cicadellinicola B-GSS [TAX:186490]
bci*
bcib
bcig
rep
 
rep
       sulfur-oxidizing symbionts
         Candidatus Ruthia
           Candidatus Ruthia magnifica
             Candidatus Ruthia magnifica (Calyptogena magnifica) [TAX:413404]
rma*
rep
         Calyptogena okutanii thioautotrophic gill symbiont
           Candidatus Vesicomyosocius okutanii (Calyptogena okutanii) [TAX:412965]
vok*
rep
         Bathymodiolus septemdierum thioautotrophic gill symbiont
           Endosymbiont of Bathymodiolus septemdierum [TAX:1303921]
ebh
 
       gamma proteobacterium HdN1
         Gamma proteobacterium HdN1 [TAX:83406]
gpb*
rep
       Thiolapillus
         Thiolapillus brandeum
           Thiolapillus brandeum [TAX:1076588]
tbn
rep
       Sedimenticola
         Sedimenticola thiotaurini
           Sedimenticola thiotaurini [TAX:1543721]
seds
rep
       Candidatus Thioglobus
         Candidatus Thioglobus singularis
           Candidatus Thioglobus singularis [TAX:1125411]
tsn
rep
         Candidatus Thioglobus autotrophicus
           Candidatus Thioglobus autotrophicus [TAX:1705394]
tho
rep
       Pseudohongiella
         Pseudohongiella spirulinae
           Pseudohongiella spirulinae [TAX:1249552]
pspi
rep
       endosymbiont of unidentified scaly snail isolate Monju
         Endosymbiont of unidentified scaly snail isolate Monju [TAX:1248727]
enm
rep
     Betaproteobacteria
       Neisseriales
         Neisseriaceae
           Neisseria
             Neisseria meningitidis
               Neisseria meningitidis Z2491 (serogroup A) [TAX:122587]
               Neisseria meningitidis MC58 (serogroup B) [TAX:122586]
               Neisseria meningitidis alpha710 (serogroup B) [TAX:630588]
               Neisseria meningitidis H44/76 (serogroup B) [TAX:909420]
               Neisseria meningitidis FAM18 (serogroup C) [TAX:272831]
               Neisseria meningitidis 053442 (serogroup C) [TAX:374833]
               Neisseria meningitidis 8013 (serogroup C) [TAX:604162]
               Neisseria meningitidis alpha14 (cnl strain) [TAX:662598]
               Neisseria meningitidis G2136 (serogroup B) [TAX:935599]
               Neisseria meningitidis M01-240149 (serogroup B) [TAX:935591]
               Neisseria meningitidis M01-240355 (serogroup B) [TAX:935588]
               Neisseria meningitidis M04-240196 (serogroup B) [TAX:935593]
               Neisseria meningitidis WUE 2594 (serogroup A) [TAX:942513]
               Neisseria meningitidis NZ-05/33 (serogroup B) [TAX:935589]
               Neisseria meningitidis 510612  (serogroup A) [TAX:487]
nma*
nme*
nmp
nmh
nmc*
nmn*
nmt
nmi*
nmd
nmm
nms
nmq
nmw
nmz
nmx
 
ref
 
 
 
 
 
 
 
 
 
 
 
 
 
             Neisseria gonorrhoeae
               Neisseria gonorrhoeae FA 1090 [TAX:242231]
               Neisseria gonorrhoeae NCCP11945 [TAX:521006]
ngo*
ngk*
ref
 
             Neisseria lactamica
               Neisseria lactamica [TAX:489653]
nla
rep
             Neisseria elongata
               Neisseria elongata [TAX:546263]
nel
rep
             Neisseria weaveri
               Neisseria weaveri [TAX:28091]
nwe
rep
           Snodgrassella
             Snodgrassella alvi
               Snodgrassella alvi [TAX:1196094]
salv
rep
           Kingella
             Kingella kingae
               Kingella kingae [TAX:504]
kki
rep
         Chromobacteriaceae
           Chromobacterium
             Chromobacterium violaceum
               Chromobacterium violaceum [TAX:243365]
cvi*
rep
             Chromobacterium vaccinii
               Chromobacterium vaccinii [TAX:1108595]
cvc
 
           Laribacter
             Laribacter hongkongensis
               Laribacter hongkongensis [TAX:557598]
lhk*
rep
           Pseudogulbenkiania
             Pseudogulbenkiania sp. NH8B
               Pseudogulbenkiania sp. NH8B [TAX:748280]
pse*
 
           Jeongeupia
             Jeongeupia sp. USM3
               Jeongeupia sp. USM3 [TAX:1906741]
jeu
 
           Aquaspirillum
             Aquaspirillum sp. LM1
               Aquaspirillum sp. LM1 [TAX:1938604]
aql
 
       Burkholderiales
         Burkholderiaceae
           Ralstonia
             Ralstonia solanacearum
               Ralstonia solanacearum GMI1000 [TAX:267608]
               Ralstonia solanacearum CFBP2957 [TAX:859656]
               Ralstonia solanacearum PSI07 [TAX:859657]
               Ralstonia solanacearum Po82 [TAX:1031711]
               Ralstonia solanacearum CMR15 [TAX:859655]
               Ralstonia solanacearum FQY_4 [TAX:1262456]
rso*
rsc
rsl
rsn
rsm
rse
rep
 
 
 
 
 
             Ralstonia pickettii
               Ralstonia pickettii 12J [TAX:402626]
               Ralstonia pickettii 12D [TAX:428406]
               Ralstonia pickettii DTP0602 [TAX:1366050]
rpi*
rpf
rpj
rep
 
 
             Ralstonia mannitolilytica
               Ralstonia mannitolilytica [TAX:105219]
rmn
rep
             Ralstonia insidiosa
               Ralstonia insidiosa [TAX:190721]
rin
 
           Cupriavidus
             Cupriavidus pinatubonensis
               Ralstonia eutropha JMP134 [TAX:264198]
reu*
 
             Cupriavidus necator
               Ralstonia eutropha H16 [TAX:381666]
               Cupriavidus necator N-1 [TAX:1042878]
reh*
cnc
 
 
             Cupriavidus metallidurans
               Cupriavidus metallidurans [TAX:266264]
rme*
rep
             Cupriavidus taiwanensis
               Cupriavidus taiwanensis [TAX:977880]
cti*
rep
             Cupriavidus basilensis
               Cupriavidus basilensis [TAX:68895]
cbw
rep
             Cupriavidus gilardii
               Cupriavidus gilardii [TAX:1267562]
cgd
rep
           Burkholderia
             pseudomallei group
               Burkholderia mallei
                 Burkholderia mallei ATCC 23344 [TAX:243160]
                 Burkholderia mallei SAVP1 [TAX:320388]
                 Burkholderia mallei NCTC 10229 [TAX:412022]
                 Burkholderia mallei NCTC 10247 [TAX:320389]
                 Burkholderia mallei 23344 [TAX:13373]
                 Burkholderia mallei 6 [TAX:13373]
                 Burkholderia mallei BMQ [TAX:13373]
                 Burkholderia mallei 2000031063 [TAX:13373]
                 Burkholderia mallei FMH 23344 [TAX:13373]
                 Burkholderia mallei 092700E [TAX:13373]
                 Burkholderia mallei 2002734299 [TAX:13373]
bma*
bmv*
bml*
bmn*
bmal
bmae
bmaq
bmai
bmaf
bmaz
bmab
ref
 
 
 
 
 
 
 
 
 
 
               Burkholderia pseudomallei
                 Burkholderia pseudomallei K96243 [TAX:272560]
                 Burkholderia pseudomallei 1710b [TAX:320372]
                 Burkholderia pseudomallei 1106a [TAX:357348]
                 Burkholderia pseudomallei 668 [TAX:320373]
                 Burkholderia pseudomallei MSHR346 [TAX:536230]
                 Burkholderia pseudomallei MSHR305 [TAX:1335307]
                 Burkholderia pseudomallei MSHR511 [TAX:1249474]
                 Burkholderia pseudomallei MSHR146 [TAX:1249471]
                 Burkholderia pseudomallei MSHR520 [TAX:1249659]
                 Burkholderia pseudomallei 1026b [TAX:884204]
                 Burkholderia pseudomallei BPC006 [TAX:1229785]
                 Burkholderia pseudomallei NCTC 13179 [TAX:1241583]
                 Burkholderia pseudomallei HBPUB10134a [TAX:1306418]
                 Burkholderia pseudomallei NAU35A-3 [TAX:1249477]
                 Burkholderia pseudomallei A79A [TAX:1439855]
                 Burkholderia sp. TSV202 [TAX:28450]
bps*
bpm*
bpl*
bpd*
bpr
bpse
bpsm
bpsu
bpsd
bpz
bpq
bpk
bpsh
bpsa
bpso
but
ref
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
               Burkholderia thailandensis
                 Burkholderia thailandensis E264 [TAX:271848]
                 Burkholderia thailandensis 2002721723 [TAX:1241582]
                 Burkholderia thailandensis E444 [TAX:1249662]
                 Burkholderia thailandensis H0587 [TAX:1249663]
                 Burkholderia thailandensis MSMB121 [TAX:1249661]
                 Burkholderia thailandensis MSMB59 [TAX:1250339]
                 Burkholderia thailandensis E254 [TAX:1249665]
                 Burkholderia thailandensis USAMRU Malaysia #20 [TAX:1249667]
                 Burkholderia thailandensis 2003015869 [TAX:57975]
                 Burkholderia thailandensis 2002721643 [TAX:1249660]
bte*
btq
btj
btz
btd
btv
bthe
bthm
btha
bthl
 
 
 
 
 
 
 
 
 
 
               Burkholderia oklahomensis
                 Burkholderia oklahomensis E0147 [TAX:342113]
                 Burkholderia oklahomensis C6786 [TAX:441162]
bok
boc
 
 
             Burkholderia cepacia complex
               Burkholderia vietnamiensis
                 Burkholderia vietnamiensis G4 [TAX:269482]
                 Burkholderia vietnamiensis LMG 10929 [TAX:1449978]
bvi*
bve
 
 
               Burkholderia lata
                 Burkholderia lata [TAX:482957]
bur*
 
               Burkholderia cenocepacia
                 Burkholderia cenocepacia AU1054 [TAX:331271]
                 Burkholderia cenocepacia HI2424 [TAX:331272]
                 Burkholderia cenocepacia MC0-3 [TAX:406425]
                 Burkholderia cenocepacia J2315 [TAX:216591]
                 Burkholderia cenocepacia DDS 22E-1 [TAX:95486]
                 Burkholderia cenocepacia DWS 37E-2 [TAX:95486]
                 Burkholderia cenocepacia H111 [TAX:1055524]
bcn*
bch*
bcm*
bcj*
bcen
bcew
bceo
 
 
 
 
 
 
 
               Burkholderia ambifaria
                 Burkholderia ambifaria AMMD [TAX:339670]
                 Burkholderia ambifaria MC40-6 [TAX:398577]
bam*
bac*
 
 
               Burkholderia multivorans
                 Burkholderia multivorans ATCC 17616 (JGI) [TAX:395019]
                 Burkholderia multivorans ATCC 17616 (Tohoku) [TAX:395019]
                 Burkholderia multivorans DDS 15A-1 [TAX:87883]
                 Burkholderia multivorans ATCC BAA-247 [TAX:985079]
bmu*
bmj*
bmk
bmul
 
 
 
 
               Burkholderia cepacia
                 Burkholderia cepacia GG4 [TAX:1009846]
                 Burkholderia cepacia DDS 7H-2 [TAX:292]
                 Burkholderia cepacia ATCC 25416 [TAX:983594]
bct
bced
 
 
 
rep
               Burkholderia dolosa
                 Burkholderia dolosa [TAX:350701]
bdl
 
               Burkholderia pyrrocinia
                 Burkholderia pyrrocinia [TAX:60550]
bpyr
 
               Burkholderia contaminans
                 Burkholderia contaminans [TAX:488447]
bcon
 
               Burkholderia diffusa
                 Burkholderia diffusa [TAX:488732]
bdf
 
             Burkholderia glumae
               Burkholderia glumae BGR1 [TAX:626418]
               Burkholderia glumae PG1 [TAX:595500]
               Burkholderia glumae LMG 2196 = ATCC 33617 [TAX:1176492]
bgl*
bgp
bgu
 
 
 
             Burkholderia sp. CCGE1001
               Burkholderia sp. CCGE1001 [TAX:640510]
bug*
 
             Burkholderia sp. CCGE1002
               Burkholderia sp. CCGE1002 [TAX:640511]
bge*
 
             Burkholderia sp. CCGE1003
               Burkholderia sp. CCGE1003 [TAX:640512]
bgf*
 
             Burkholderia gladioli
               Burkholderia gladioli BSR3 [TAX:999541]
               Burkholderia gladioli ATCC 10248 [TAX:28095]
bgd
bgo
 
rep
             Burkholderia sp. YI23
               Burkholderia sp. YI23 [TAX:1097668]
byi
 
             Burkholderia sp. KJ006
               Burkholderia sp. KJ006 [TAX:416344]
buk
 
             Burkholderia sp. RPE64
               Burkholderia sp. RPE64 [TAX:758793]
buo
 
             Burkholderia sp. RPE67
               Burkholderia sp. RPE67 [TAX:758796]
bue
 
             Burkholderia sp. 2002721687
               Burkholderia sp. 2002721687 [TAX:1468409]
bul
 
             Burkholderia ubonensis
               Burkholderia ubonensis [TAX:1249668]
bub
rep
             Burkholderia sp. HB1
               Burkholderia sp. HB1 [TAX:1678678]
buq
 
             Burkholderia plantarii
               Burkholderia plantarii [TAX:41899]
bpla
 
             Burkholderia sp. Bp5365
               Burkholderia sp. Bp5365 [TAX:1740162]
bud
 
           Paraburkholderia
             Paraburkholderia xenovorans
               Paraburkholderia xenovorans LB400 [TAX:266265]
               Paraburkholderia xenovorans LB400 [TAX:266265]
bxe*
bxb
rep
 
             Paraburkholderia phymatum
               Paraburkholderia phymatum [TAX:391038]
bph*
rep
             Paraburkholderia rhizoxinica
               Paraburkholderia rhizoxinica [TAX:882378]
brh*
rep
             Paraburkholderia phenoliruptrix
               Paraburkholderia phenoliruptrix [TAX:1229205]
bpx
 
             Paraburkholderia phytofirmans
               Paraburkholderia phytofirmans [TAX:398527]
bpy*
 
             Paraburkholderia fungorum
               Paraburkholderia fungorum [TAX:134537]
bfn
 
             Paraburkholderia caribensis
               Paraburkholderia caribensis [TAX:1323664]
bcai
 
             Paraburkholderia sprentiae
               Paraburkholderia sprentiae [TAX:754502]
pspw
rep
           Polynucleobacter
             Polynucleobacter asymbioticus
               Polynucleobacter asymbioticus [TAX:312153]
pnu*
rep
             Polynucleobacter necessarius
               Polynucleobacter necessarius subsp. necessarius [TAX:452638]
pne*
rep
             Polynucleobacter duraquae
               Polynucleobacter duraquae [TAX:1835254]
pdq
rep
           Pandoraea
             Pandoraea pnomenusa
               Pandoraea pnomenusa 3kgm [TAX:1416914]
               Pandoraea pnomenusa RB38 [TAX:93220]
               Pandoraea pnomenusa DSM 16536 [TAX:93220]
               Pandoraea pnomenusa [TAX:93220]
ppk
ppno
ppnm
prb
 
 
rep
 
             Pandoraea pulmonicola
               Pandoraea pulmonicola [TAX:93221]
ppul
 
             Pandoraea sputorum
               Pandoraea sputorum [TAX:93222]
pspu
 
             Pandoraea apista
               Pandoraea apista [TAX:93218]
papi
 
             Pandoraea vervacti
               Pandoraea vervacti [TAX:656178]
pve
 
             Pandoraea oxalativorans
               Pandoraea oxalativorans [TAX:573737]
pox
 
             Pandoraea thiooxydans
               Pandoraea thiooxydans [TAX:445709]
ptx
 
             Pandoraea faecigallinarum
               Pandoraea faecigallinarum [TAX:656179]
pfg
 
             Pandoraea norimbergensis
               Pandoraea norimbergensis [TAX:93219]
pnr
 
         Alcaligenaceae
           Bordetella
             Bordetella pertussis
               Bordetella pertussis Tohama I [TAX:257313]
               Bordetella pertussis CS [TAX:1017264]
               Bordetella pertussis 18323 [TAX:568706]
               Bordetella pertussis B1917 [TAX:743277]
               Bordetella pertussis 137 [TAX:1403053]
bpe*
bpc
bper
bpet
bpeu
ref
 
 
 
 
             Bordetella parapertussis
               Bordetella parapertussis 12822 [TAX:257311]
               Bordetella parapertussis Bpp5 [TAX:1208660]
bpa*
bpar
 
ref
             Bordetella bronchiseptica
               Bordetella bronchiseptica RB50 [TAX:257310]
               Bordetella bronchiseptica MO149 [TAX:1208658]
               Bordetella bronchiseptica 253 [TAX:568707]
               Bordetella bronchiseptica S798 [TAX:518]
bbr*
bbm
bbh
bbx
 
 
ref
 
             Bordetella petrii
               Bordetella petrii [TAX:340100]
bpt*
rep
             Bordetella avium
               Bordetella avium [TAX:360910]
bav*
 
             Bordetella holmesii
               Bordetella holmesii ATCC 51541 [TAX:1247649]
               Bordetella holmesii 44057 [TAX:1172205]
bho
bhm
rep
 
             Bordetella hinzii
               Bordetella hinzii [TAX:103855]
bhz
rep
             Bordetella trematum
               Bordetella trematum [TAX:123899]
btrm
rep
             Bordetella bronchialis
               Bordetella bronchialis [TAX:463025]
bbro
 
             Bordetella flabilis
               Bordetella flabilis [TAX:463014]
bfz
 
           Achromobacter
             Achromobacter xylosoxidans
               Achromobacter xylosoxidans A8 [TAX:762376]
               Achromobacter xylosoxidans NH44784-1996 [TAX:1167634]
               Achromobacter xylosoxidans NBRC 15126 = ATCC 27061 [TAX:1216976]
               Achromobacter xylosoxidans C54 [TAX:562971]
               Achromobacter xylosoxidans NCTC10807 [TAX:85698]
axy*
axo
axn
axs
axx
 
 
 
 
rep
             Achromobacter denitrificans
               Achromobacter denitrificans [TAX:32002]
adt
 
             Achromobacter insolitus
               Achromobacter insolitus [TAX:217204]
ais
 
           Taylorella
             Taylorella equigenitalis
               Taylorella equigenitalis MCE9 [TAX:937774]
               Taylorella equigenitalis ATCC 35865 [TAX:743973]
               Taylorella equigenitalis 14/56 [TAX:1091497]
teq*
tea
teg
 
rep
 
             Taylorella asinigenitalis
               Taylorella asinigenitalis MCE3 [TAX:1008459]
               Taylorella asinigenitalis 14/45 [TAX:1091495]
tas
tat
rep
 
           Pusillimonas
             Pusillimonas sp. T7-7
               Pusillimonas sp. T7-7 [TAX:1007105]
put*
 
           Advenella
             Advenella kashmirensis
               Advenella kashmirensis [TAX:1036672]
aka
 
             Advenella mimigardefordensis
               Advenella mimigardefordensis [TAX:1247726]
amim
rep
           Castellaniella
             Castellaniella defragrans
               Castellaniella defragrans [TAX:1437824]
cdn
rep
           Basilea
             Basilea psittacipulmonis
               Basilea psittacipulmonis [TAX:1072685]
bpsi
rep
           Alcaligenes
             Alcaligenes faecalis
               Alcaligenes faecalis [TAX:511]
afa
rep
           Paenalcaligenes
             Paenalcaligenes hominis
               Paenalcaligenes hominis [TAX:643674]
phn
 
         Comamonadaceae
           Rhodoferax
             Rhodoferax ferrireducens
               Rhodoferax ferrireducens [TAX:338969]
rfr*
rep
             Rhodoferax saidenbachensis
               Rhodoferax saidenbachensis [TAX:1484693]
rsb
rep
             Rhodoferax antarcticus
               Rhodoferax antarcticus [TAX:81479]
rac
 
             Rhodoferax sp. DCY110
               Rhodoferax sp. DCY110 [TAX:1842727]
rhy
 
           Polaromonas
             Polaromonas sp. JS666
               Polaromonas sp. JS666 [TAX:296591]
pol*
 
             Polaromonas naphthalenivorans
               Polaromonas naphthalenivorans [TAX:365044]
pna*
rep
           Acidovorax
             Acidovorax citrulli
               Acidovorax citrulli [TAX:397945]
aav*
 
             Acidovorax sp. JS42
               Acidovorax sp. JS42 [TAX:232721]
ajs*
 
             Acidovorax ebreus
               Acidovorax ebreus [TAX:535289]
dia*
rep
             Acidovorax avenae
               Acidovorax avenae [TAX:643561]
aaa*
rep
             Acidovorax sp. KKS102
               Acidovorax sp. KKS102 [TAX:358220]
ack
 
             Acidovorax sp. RAC01
               Acidovorax sp. RAC01 [TAX:1842533]
acra
 
           Verminephrobacter
             Verminephrobacter eiseniae
               Verminephrobacter eiseniae [TAX:391735]
vei*
rep
           Delftia
             Delftia acidovorans
               Delftia acidovorans [TAX:398578]
dac*
rep
             Delftia sp. Cs1-4
               Delftia sp. Cs1-4 [TAX:742013]
del*
 
             Delftia tsuruhatensis
               Delftia tsuruhatensis [TAX:180282]
dts
 
             Delftia sp. HK171
               Delftia sp. HK171 [TAX:1920191]
dhk
 
           Variovorax
             Variovorax paradoxus
               Variovorax paradoxus S110 [TAX:543728]
               Variovorax paradoxus EPS [TAX:595537]
               Variovorax paradoxus B4 [TAX:1246301]
vap*
vpe*
vpd
 
rep
 
             Variovorax sp. PAMC 28711
               Variovorax sp. PAMC 28711 [TAX:1795631]
vaa
 
           Comamonas
             Comamonas testosteroni
               Comamonas testosteroni CNB-2 [TAX:688245]
               Comamonas testosteroni TK102 [TAX:1392005]
ctt*
ctes
 
rep
             Comamonas aquatica
               Comamonas aquatica [TAX:225991]
 
rep
           Alicycliphilus
             Alicycliphilus denitrificans
               Alicycliphilus denitrificans BC [TAX:596153]
               Alicycliphilus denitrificans K601 [TAX:596154]
adn*
adk*
 
rep
           Ramlibacter
             Ramlibacter tataouinensis
               Ramlibacter tataouinensis [TAX:365046]
rta*
rep
           Candidatus Symbiobacter
             Candidatus Symbiobacter mobilis
               Symbiobacter mobilis [TAX:946483]
cbx
rep
           Ottowia
             Ottowia sp. oral taxon 894
               Ottowia sp. oral taxon 894 [TAX:1658672]
oto
 
           Limnohabitans
             Limnohabitans sp. 103DPR2
               Limnohabitans sp. 103DPR2 [TAX:1678129]
lim
 
             Limnohabitans sp. 63ED37-2
               Limnohabitans sp. 63ED37-2 [TAX:1678128]
lih
 
           Hydrogenophaga
             Hydrogenophaga sp. RAC07
               Hydrogenophaga sp. RAC07 [TAX:1842537]
hyr
 
             Hydrogenophaga sp. PBC
               Hydrogenophaga sp. PBC [TAX:795665]
hyb
 
             Hydrogenophaga sp. LPB0072
               Hydrogenophaga sp. LPB0072 [TAX:1763535]
hyl
 
           Comamonadaceae bacterium A1
             Comamonadaceae bacterium A1 [TAX:1458425]
cbaa
rep
           Comamonadaceae bacterium B1
             Comamonadaceae bacterium B1 [TAX:1458426]
cbab
rep
         Methylibium
           Methylibium petroleiphilum
             Methylibium petroleiphilum [TAX:420662]
mpt*
rep
         Oxalobacteraceae
           Herminiimonas
             Herminiimonas arsenicoxydans
               Herminiimonas arsenicoxydans [TAX:204773]
har*
rep
           Janthinobacterium
             Janthinobacterium sp. Marseille
               Janthinobacterium sp. Marseille [TAX:375286]
mms*
 
             Janthinobacterium agaricidamnosum
               Janthinobacterium agaricidamnosum [TAX:1349767]
jag
rep
             Janthinobacterium sp. B9-8
               Janthinobacterium sp. B9-8 [TAX:1236179]
jab
 
             Janthinobacterium sp. 1_2014MBL_MicDiv
               Janthinobacterium sp. 1_2014MBL_MicDiv [TAX:1644131]
jaz
 
           Herbaspirillum
             Herbaspirillum seropedicae
               Herbaspirillum seropedicae SmR1 [TAX:757424]
               Herbaspirillum seropedicae Z67 [TAX:964]
hse*
hsz
 
rep
             Herbaspirillum hiltneri
               Herbaspirillum hiltneri [TAX:1262470]
hht
rep
             Herbaspirillum rubrisubalbicans
               Herbaspirillum rubrisubalbicans [TAX:1078773]
hrb
 
           Candidatus Zinderia
             Candidatus Zinderia insecticola
               Candidatus Zinderia insecticola [TAX:871271]
zin*
 
           Collimonas
             Collimonas fungivorans
               Collimonas fungivorans [TAX:1005048]
cfu
 
             Collimonas arenae
               Collimonas arenae [TAX:279058]
care
 
             Collimonas pratensis
               Collimonas pratensis [TAX:279113]
cpra
rep
           Massilia
             Massilia sp. NR 4-1
               Massilia sp. NR 4-1 [TAX:1678028]
mnr
 
             Massilia sp. WG5
               Massilia sp. WG5 [TAX:1707785]
masw
 
             Massilia putida
               Massilia putida [TAX:1141883]
 
rep
         Leptothrix
           Leptothrix cholodnii
             Leptothrix cholodnii [TAX:395495]
lch*
rep
         Thiomonas
           Thiomonas intermedia
             Thiomonas intermedia [TAX:75379]
tin*
 
           Thiomonas arsenitoxydans
             Thiomonas arsenitoxydans [TAX:426114]
thi
rep
         Rubrivivax
           Rubrivivax gelatinosus
             Rubrivivax gelatinosus [TAX:983917]
rge
rep
           Rubrivivax benzoatilyticus
             Rubrivivax benzoatilyticus [TAX:987059]
rbn
 
         Roseateles
           Roseateles depolymerans
             Roseateles depolymerans [TAX:76731]
rdp
rep
         Paucibacter
           Paucibacter sp. KCTC 42545
             Paucibacter sp. KCTC 42545 [TAX:1768242]
pkt
 
         Mitsuaria
           Mitsuaria sp. 7
             Mitsuaria sp. 7 [TAX:1658665]
miu
 
         Burkholderiales bacterium GJ-E10
           Burkholderiales bacterium GJ-E10 [TAX:1469502]
bbag
rep
         Burkholderiales bacterium YL45
           Burkholderiales bacterium YL45 [TAX:1834205]
bbay
 
         [Polyangium] brachysporum
           Polyangium brachysporum [TAX:413882]
pbh
rep
         Burkholderiales bacterium JOSHI_001
           Burkholderiales bacterium JOSHI_001 [TAX:864051]
 
rep
       Nitrosomonadales
         Nitrosomonadaceae
           Nitrosomonas
             Nitrosomonas europaea
               Nitrosomonas europaea [TAX:228410]
neu*
rep
             Nitrosomonas eutropha
               Nitrosomonas eutropha [TAX:335283]
net*
rep
             Nitrosomonas sp. AL212
               Nitrosomonas sp. AL212 [TAX:153948]
nit
 
             Nitrosomonas sp. Is79A3
               Nitrosomonas sp. Is79A3 [TAX:261292]
nii
 
             Nitrosomonas communis
               Nitrosomonas communis [TAX:44574]
nco
rep
             Nitrosomonas ureae
               Nitrosomonas ureae [TAX:44577]
nur
 
           Nitrosospira
             Nitrosospira multiformis
               Nitrosospira multiformis [TAX:323848]
nmu*
rep
             Nitrosospira briensis
               Nitrosospira briensis C-128 [TAX:1266925]
 
rep
       Rhodocyclales
         Rhodocyclaceae
           Aromatoleum
             Aromatoleum aromaticum
               Aromatoleum aromaticum [TAX:76114]
eba*
rep
           Azoarcus
             Azoarcus sp. BH72
               Azoarcus sp. BH72 [TAX:62928]
azo*
 
             Azoarcus sp. KH32C
               Azoarcus sp. KH32C [TAX:748247]
aza
 
             Azoarcus sp. CIB
               Azoarcus sp. CIB [TAX:198107]
azi
 
             Azoarcus olearius
               Azoarcus olearius [TAX:418699]
aoa
rep
           Dechloromonas
             Dechloromonas aromatica
               Dechloromonas aromatica [TAX:159087]
dar*
rep
           Thauera
             Thauera sp. MZ1T
               Thauera sp. MZ1T [TAX:85643]
tmz*
 
             Thauera humireducens
               Thauera humireducens [TAX:1134435]
thu
rep
             Thauera chlorobenzoica
               Thauera chlorobenzoica [TAX:96773]
tcl
 
           Azospira
             Azospira oryzae
               Dechlorosoma suillum [TAX:640081]
dsu
rep
           Sulfuritalea
             Sulfuritalea hydrogenivorans
               Sulfuritalea hydrogenivorans [TAX:1223802]
shd
rep
           Methyloversatilis
             Methyloversatilis sp. RAC08
               Methyloversatilis sp. RAC08 [TAX:1842540]
metr
 
           Rugosibacter
             Rugosibacter aromaticivorans
               Rugosibacter aromaticivorans [TAX:1565605]
rbu
 
       Hydrogenophilales
         Hydrogenophilaceae
           Thiobacillus
             Thiobacillus denitrificans
               Thiobacillus denitrificans [TAX:292415]
tbd*
rep
       Sulfuricellales
         Sulfuricellaceae
           Sulfuricella
             Sulfuricella denitrificans
               Sulfuricella denitrificans [TAX:1163617]
sdr
rep
       Methylophilales
         Methylophilaceae
           Methylobacillus
             Methylobacillus flagellatus
               Methylobacillus flagellatus [TAX:265072]
mfa*
rep
           Methylotenera
             Methylotenera mobilis
               Methylotenera mobilis [TAX:583345]
mmb*
rep
             Methylotenera versatilis
               Methylotenera versatilis [TAX:666681]
meh
rep
           Methylovorus
             Methylovorus glucosotrophus
               Methylovorus glucosetrophus [TAX:582744]
mei*
rep
             Methylovorus sp. MP688
               Methylovorus sp. MP688 [TAX:887061]
mep
 
           Candidatus Methylopumilus
             Candidatus Methylopumilus turicensis
               Candidatus Methylopumilus turicensis [TAX:1581680]
mbac
rep
             Candidatus Methylopumilus planktonicus
               Candidatus Methylopumilus planktonicus [TAX:1581557]
mbat
rep
           Methylophilus
             Methylophilus sp. TWE2
               Methylophilus sp. TWE2 [TAX:1662285]
meu
 
         unclassified Methylophilales
           Methylophilales bacterium MBRSF5
             Methylophilales bacterium MBRSF5 [TAX:1623448]
 
rep
       Candidatus Accumulibacter
         Candidatus Accumulibacter phosphatis
           Accumulibacter phosphatis [TAX:522306]
app*
rep
       Candidatus Tremblaya
         Candidatus Tremblaya princeps
           Candidatus Tremblaya princeps PCIT [TAX:891398]
           Candidatus Tremblaya princeps PCVAL [TAX:1053648]
tpn*
tpq
 
 
         Candidatus Tremblaya phenacola
           Candidatus Tremblaya phenacola [TAX:1266371]
tpj
 
       Gallionellales
         Gallionellaceae
           Sideroxydans
             Sideroxydans lithotrophicus
               Sideroxydans lithotrophicus [TAX:580332]
slt*
rep
           Gallionella
             Gallionella capsiferriformans
               Gallionella capsiferriformans [TAX:395494]
gca*
rep
       Kinetoplastibacterium
         Candidatus Kinetoplastibacterium crithidii
           Candidatus Kinetoplastibacterium crithidii (ex Angomonas deanei ATCC 30255) [TAX:1267577]
           Candidatus Kinetoplastibacterium crithidii TCC036E [TAX:1208918]
kci
kct
 
rep
         Kinetoplastibacterium blastocrithidii
           Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas culicis) [TAX:1208923]
           Candidatus Kinetoplastibacterium blastocrithidii TCC012E [TAX:1208922]
kbl
kbt
rep
 
         Candidatus Kinetoplastibacterium desouzaii
           Candidatus Kinetoplastibacterium desouzaii [TAX:1208919]
kde
rep
         Candidatus Kinetoplastibacterium galatii
           Candidatus Kinetoplastibacterium galatii [TAX:1208921]
kga
rep
         Candidatus Kinetoplastibacterium oncopeltii
           Candidatus Kinetoplastibacterium oncopeltii [TAX:1208920]
kon
rep
       Candidatus Profftella
         Candidatus Profftella armatura
           Candidatus Profftella armatura [TAX:669502]
ssdc
rep
       Candidatus Nasuia
         Candidatus Nasuia deltocephalinicola
           Candidatus Nasuia deltocephalinicola [TAX:1343077]
ndl
 
       beta proteobacterium CB
         Beta proteobacterium CB [TAX:543913]
bprc
 
       Betaproteobacteria bacterium UKL13-2
         Betaproteobacteria bacterium UKL13-2 [TAX:1690485]
beb
 
       Betaproteobacteria bacterium GR16-43
         Betaproteobacteria bacterium GR16-43 [TAX:1904640]
beba
 
     Epsilonproteobacteria
       Campylobacterales
         Helicobacteraceae
           Helicobacter
             Helicobacter pylori
               Helicobacter pylori 26695 [TAX:85962]
               Helicobacter pylori 26695 [TAX:85962]
               Helicobacter pylori J99 [TAX:85963]
               Helicobacter pylori HPAG1 [TAX:357544]
               Helicobacter pylori Shi470 [TAX:512562]
               Helicobacter pylori Shi112 [TAX:1163740]
               Helicobacter pylori Shi169 [TAX:1163741]
               Helicobacter pylori Shi417 [TAX:1163739]
               Helicobacter pylori G27 [TAX:563041]
               Helicobacter pylori P12 [TAX:570508]
               Helicobacter pylori B38 [TAX:592205]
               Helicobacter pylori B8 [TAX:693745]
               Helicobacter pylori PeCan4 [TAX:765963]
               Helicobacter pylori PeCan18 [TAX:1163742]
               Helicobacter pylori SJM180 [TAX:765962]
               Helicobacter pylori ELS37 [TAX:1055527]
               Helicobacter pylori 35A [TAX:585535]
               Helicobacter pylori 908 [TAX:869727]
               Helicobacter pylori 2017 [TAX:985081]
               Helicobacter pylori 2018 [TAX:985080]
               Helicobacter pylori Cuz20 [TAX:765964]
               Helicobacter pylori F16 [TAX:866344]
               Helicobacter pylori F30 [TAX:866345]
               Helicobacter pylori F32 [TAX:102608]
               Helicobacter pylori F57 [TAX:866346]
               Helicobacter pylori Sat464 [TAX:794851]
               Helicobacter pylori 52 [TAX:684950]
               Helicobacter pylori v225d [TAX:637913]
               Helicobacter pylori 83 [TAX:585538]
               Helicobacter pylori SNT49 [TAX:1055530]
               Helicobacter pylori Lithuania75 [TAX:907237]
               Helicobacter pylori Gambia94/24 [TAX:907240]
               Helicobacter pylori India7 [TAX:907238]
               Helicobacter pylori Puno120 [TAX:1055528]
               Helicobacter pylori Puno135 [TAX:1055529]
               Helicobacter pylori SouthAfrica7 [TAX:907239]
               Helicobacter pylori SouthAfrica20 [TAX:1352356]
               Helicobacter pylori HUP-B14 [TAX:1163743]
               Helicobacter pylori 51 [TAX:290847]
               Helicobacter pylori XZ274 [TAX:1127122]
               Helicobacter pylori Rif1 [TAX:1234365]
               Helicobacter pylori Rif2 [TAX:1234600]
               Helicobacter pylori Aklavik117 [TAX:1055531]
               Helicobacter pylori Aklavik86 [TAX:1055532]
               Helicobacter pylori OK113 [TAX:1248725]
               Helicobacter pylori OK310 [TAX:1248726]
               Helicobacter pylori oki102 [TAX:1382920]
               Helicobacter pylori oki112 [TAX:1382921]
               Helicobacter pylori oki128 [TAX:1382922]
               Helicobacter pylori oki154 [TAX:1382923]
               Helicobacter pylori oki422 [TAX:1382924]
               Helicobacter pylori oki673 [TAX:1382925]
               Helicobacter pylori oki828 [TAX:1382926]
               Helicobacter pylori oki898 [TAX:1382927]
               Helicobacter pylori UM032 [TAX:1311573]
               Helicobacter pylori UM037 [TAX:1321939]
               Helicobacter pylori UM066 [TAX:1321940]
               Helicobacter pylori UM299 [TAX:1321938]
               Helicobacter pylori UM298 [TAX:1321941]
               Helicobacter pylori BM012A [TAX:1407462]
               Helicobacter pylori BM012S [TAX:1407463]
hpy*
heo
hpj*
hpa*
hps*
hhp
hhq
hhr
hpg*
hpp*
hpb
hpl
hpc
hca
hpm
hpe
hpo
hpi
hpq
hpw
hpu
hef
hpf
heq
hex
hpt
hpz
hpv
hpx
hen
hph
heg
hpn
hep
heu
hes
hpys
hcn
hpd
hey
her
hei
hpya
hpyk
hpyo
hpyl
hpyb
hpyc
hpyd
hpye
hpyf
hpyg
hpyh
hpyj
hpyr
hpyi
hpyu
hpym
hem
heb
hez
ref
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
             Helicobacter hepaticus
               Helicobacter hepaticus [TAX:235279]
hhe*
rep
             Helicobacter acinonychis
               Helicobacter acinonychis [TAX:382638]
hac*
rep
             Helicobacter mustelae
               Helicobacter mustelae [TAX:679897]
hms
rep
             Helicobacter felis
               Helicobacter felis [TAX:936155]
hfe
rep
             Helicobacter bizzozeronii
               Helicobacter bizzozeronii [TAX:1002804]
hbi
rep
             Helicobacter cetorum
               Helicobacter cetorum MIT 00-7128 [TAX:182217]
               Helicobacter cetorum MIT 99-5656 [TAX:1163745]
hce
hcm
rep
rep
             Helicobacter cinaedi
               Helicobacter cinaedi PAGU611 [TAX:1172562]
               Helicobacter cinaedi ATCC BAA-847 [TAX:537971]
hcp
hcb
 
rep
             Helicobacter heilmannii
               Helicobacter heilmannii [TAX:1216962]
hhm
 
             Helicobacter typhlonius
               Helicobacter typhlonius [TAX:76936]
hty
rep
             Helicobacter canadensis
               Helicobacter canadensis MIT 98-5491 [TAX:537970]
 
rep
           Wolinella
             Wolinella succinogenes
               Wolinella succinogenes [TAX:273121]
wsu*
rep
           Sulfurimonas
             Sulfurimonas denitrificans
               Sulfurimonas denitrificans [TAX:326298]
tdn*
rep
             Sulfurimonas autotrophica
               Sulfurimonas autotrophica [TAX:563040]
sua
rep
             Sulfurimonas gotlandica
               Sulfurimonas gotlandica GD1 [TAX:929558]
 
rep
           Sulfuricurvum
             Sulfuricurvum kujiense
               Sulfuricurvum kujiense [TAX:709032]
sku*
rep
             Candidatus Sulfuricurvum sp. RIFRC-1
               Candidatus Sulfuricurvum sp. RIFRC-1 [TAX:1249480]
sulr
 
         Campylobacteraceae
           Campylobacter
             Campylobacter jejuni
               Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 [TAX:192222]
               Campylobacter jejuni subsp. jejuni NCTC 11168-BN148 [TAX:1211776]
               Campylobacter jejuni subsp. jejuni 81-176 [TAX:354242]
               Campylobacter jejuni subsp. jejuni 81116 [TAX:407148]
               Campylobacter jejuni subsp. jejuni ICDCCJ07001 [TAX:757425]
               Campylobacter jejuni subsp. jejuni IA3902 [TAX:567106]
               Campylobacter jejuni subsp. jejuni M1 [TAX:645464]
               Campylobacter jejuni subsp. jejuni S3 [TAX:718271]
               Campylobacter jejuni subsp. jejuni PT14 [TAX:1201032]
               Campylobacter jejuni subsp. jejuni 00-2426 [TAX:1380767]
               Campylobacter jejuni subsp. jejuni 00-2538 [TAX:1380768]
               Campylobacter jejuni subsp. jejuni 00-2544 [TAX:1383068]
               Campylobacter jejuni subsp. jejuni 00-2425 [TAX:1357994]
               Campylobacter jejuni subsp. jejuni R14 [TAX:1295010]
               Campylobacter jejuni subsp. jejuni MTVDSCj20 [TAX:32022]
               Campylobacter jejuni subsp. jejuni YH001 [TAX:32022]
               Campylobacter jejuni subsp. jejuni 35925B2 [TAX:32022]
               Campylobacter jejuni subsp. jejuni 00-1597 [TAX:32022]
               Campylobacter jejuni subsp. jejuni 00-6200 [TAX:32022]
               Campylobacter jejuni RM1221 [TAX:195099]
               Campylobacter jejuni subsp. doylei 269.97 [TAX:360109]
               Campylobacter jejuni 32488 [TAX:1338035]
               Campylobacter jejuni 4031 [TAX:1347340]
cje*
cjb
cjj*
cju*
cjn
cji
cjm
cjs
cjp
cjej
cjeu
cjen
cjei
cjer
cjv
cjy
cjq
cjl
cjw
cjr*
cjd*
cjz
cjx
ref
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
             Campylobacter fetus
               Campylobacter fetus subsp. fetus 82-40 [TAX:360106]
               Campylobacter fetus subsp. fetus 04/554 [TAX:1240980]
               Campylobacter fetus subsp. venerealis cfvi03/293 [TAX:1273266]
               Campylobacter fetus subsp. venerealis 97/608 [TAX:1093099]
               Campylobacter fetus subsp. venerealis 84-112 [TAX:688354]
               Campylobacter fetus subsp. testudinum 03-427 [TAX:1244528]
               Campylobacter fetus subsp. testudinum pet-3 [TAX:1507806]
cff*
cft
cfv
cfx
cfz
camp
cfp
 
 
 
 
 
rep
 
             Campylobacter curvus
               Campylobacter curvus [TAX:360105]
ccv*
rep
             Campylobacter hominis
               Campylobacter hominis [TAX:360107]
cha*
rep
             Campylobacter concisus
               Campylobacter concisus 13826 [TAX:360104]
               Campylobacter concisus ATCC 33237 [TAX:199]
cco*
ccoc
 
rep
             Campylobacter lari
               Campylobacter lari RM2100 [TAX:306263]
               Campylobacter lari RM16701 [TAX:1453989]
               Campylobacter lari RM16712 [TAX:1453988]
               Campylobacter lari CCUG 22395 [TAX:1388750]
               Campylobacter lari NCTC 11845 [TAX:1388749]
               Campylobacter lari subsp. concheus LMG 11760 [TAX:1031536]
cla*
clr
clm
clq
cln
cll
rep
 
 
 
 
 
             Campylobacter coli
               Campylobacter coli 76339 [TAX:1367491]
               Campylobacter coli CVM N29710 [TAX:1273173]
               Campylobacter coli 15-537360 [TAX:1358410]
               Campylobacter coli RM1875 [TAX:1183378]
               Campylobacter coli RM4661 [TAX:1183379]
               Campylobacter coli RM5611 [TAX:1183380]
               Campylobacter coli FB1 [TAX:195]
               Campylobacter coli OR12 [TAX:195]
ccol
ccc
ccq
ccf
ccy
ccoi
ccof
ccoo
 
 
 
 
rep
 
 
rep
             Campylobacter iguaniorum
               Campylobacter iguaniorum [TAX:1244531]
caj
rep
             Campylobacter insulaenigrae
               Campylobacter insulaenigrae [TAX:1031564]
cis
rep
             Campylobacter volucris
               Campylobacter volucris [TAX:580033]
cvo
rep
             Campylobacter peloridis
               Campylobacter peloridis [TAX:1388753]
cpel
 
             Campylobacter sp. RM16704
               Campylobacter sp. RM16704 [TAX:1500960]
camr
 
             Campylobacter subantarcticus
               Campylobacter subantarcticus LMG 24374 [TAX:1388751]
               Campylobacter subantarcticus LMG 24377 [TAX:1388752]
csm
csf
 
 
             Campylobacter gracilis
               Campylobacter gracilis [TAX:824]
cgra
rep
             Campylobacter ureolyticus
               Campylobacter ureolyticus [TAX:1032069]
cure
rep
             Campylobacter hyointestinalis
               Campylobacter hyointestinalis [TAX:1031746]
chyo
rep
           Arcobacter
             Arcobacter butzleri
               Arcobacter butzleri RM4018 [TAX:367737]
               Arcobacter butzleri ED-1 [TAX:944546]
               Arcobacter butzleri 7h1h [TAX:1036172]
abu*
abt
abl
rep
 
 
             Arcobacter nitrofigilis
               Arcobacter nitrofigilis [TAX:572480]
ant
rep
             Arcobacter sp. L
               Arcobacter sp. L [TAX:944547]
arc
 
             Arcobacter sp. LPB0137
               Arcobacter sp. LPB0137 [TAX:1850254]
alp
 
           Sulfurospirillum
             Sulfurospirillum deleyianum
               Sulfurospirillum deleyianum [TAX:525898]
sdl*
rep
             Sulfurospirillum barnesii
               Sulfurospirillum barnesii [TAX:760154]
sba
rep
             Sulfurospirillum multivorans
               Sulfurospirillum multivorans [TAX:1150621]
smul
rep
             Sulfurospirillum halorespirans
               Sulfurospirillum halorespirans [TAX:1193502]
shal
 
             Sulfurospirillum cavolei
               Sulfurospirillum cavolei [TAX:366522]
 
rep
         Nitratifractor
           Nitratifractor salsuginis
             Nitratifractor salsuginis [TAX:749222]
nsa*
rep
       Nitratiruptor
         Nitratiruptor sp. SB155-2
           Nitratiruptor sp. SB155-2 [TAX:387092]
nis*
 
       Sulfurovum
         Sulfurovum sp. NBC37-1
           Sulfurovum sp. NBC37-1 [TAX:387093]
sun*
 
         Sulfurovum lithotrophicum
           Sulfurovum lithotrophicum [TAX:206403]
slh
rep
       Nautiliales
         Nautiliaceae
           Nautilia
             Nautilia profundicola
               Nautilia profundicola [TAX:598659]
nam*
rep
     Deltaproteobacteria
       Desulfuromonadales
         Geobacteraceae
           Geobacter
             Geobacter sulfurreducens
               Geobacter sulfurreducens PCA [TAX:243231]
               Geobacter sulfurreducens KN400 [TAX:663917]
gsu*
gsk
ref
 
             Geobacter metallireducens
               Geobacter metallireducens [TAX:269799]
gme*
rep
             Geobacter uraniireducens
               Geobacter uraniireducens [TAX:351605]
gur*
rep
             Geobacter lovleyi
               Geobacter lovleyi [TAX:398767]
glo*
rep
             Geobacter bemidjiensis
               Geobacter bemidjiensis [TAX:404380]
gbm*
rep
             Geobacter daltonii
               Geobacter daltonii FRC-32 [TAX:316067]
geo*
rep
             Geobacter sp. M21
               Geobacter sp. M21 [TAX:443144]
gem*
 
             Geobacter sp. M18
               Geobacter sp. M18 [TAX:443143]
geb
 
             Geobacter pickeringii
               Geobacter pickeringii [TAX:345632]
gpi
rep
             Geobacter anodireducens
               Geobacter anodireducens [TAX:1340425]
gao
 
           Geoalkalibacter
             Geoalkalibacter subterraneus
               Geoalkalibacter subterraneus [TAX:483547]
gsb
rep
         Desulfuromonadaceae
           Pelobacter
             Pelobacter carbinolicus
               Pelobacter carbinolicus [TAX:338963]
pca*
rep
             Pelobacter propionicus
               Pelobacter propionicus [TAX:338966]
ppd*
rep
             Pelobacter acetylenicus
               Pelobacter acetylenicus [TAX:29542]
pace
 
             Pelobacter sp. SFB93
               Pelobacter sp. SFB93 [TAX:1842532]
pef
 
           Desulfuromonas
             Desulfuromonas soudanensis
               Desulfuromonas soudanensis [TAX:1603606]
des
rep
             Desulfuromonas sp. DDH964
               Desulfuromonas sp. DDH964 [TAX:1823759]
deu
 
       Desulfovibrionales
         Desulfovibrionaceae
           Desulfovibrio
             Desulfovibrio vulgaris
               Desulfovibrio vulgaris Hildenborough [TAX:882]
               Desulfovibrio vulgaris DP4 [TAX:391774]
               Desulfovibrio vulgaris Miyazaki F [TAX:883]
               Desulfovibrio vulgaris RCH1 [TAX:573059]
dvu*
dvl*
dvm*
dvg
ref
 
rep
 
             Desulfovibrio alaskensis
               Desulfovibrio alaskensis [TAX:207559]
dde*
rep
             Desulfovibrio desulfuricans
               Desulfovibrio desulfuricans ATCC 27774 [TAX:525146]
               Desulfovibrio desulfuricans ND132 [TAX:641491]
dds*
ddn
rep
rep
             Desulfovibrio magneticus
               Desulfovibrio magneticus [TAX:573370]
dma*
rep
             Desulfovibrio salexigens
               Desulfovibrio salexigens [TAX:526222]
dsa*
rep
             Desulfovibrio aespoeensis
               Desulfovibrio aespoeensis [TAX:643562]
das
rep
             Desulfovibrio africanus
               Desulfovibrio africanus [TAX:690850]
daf
rep
             Desulfovibrio hydrothermalis
               Desulfovibrio hydrothermalis [TAX:1121451]
dhy
rep
             Desulfovibrio piezophilus
               Desulfovibrio piezophilus [TAX:1322246]
dpi
rep
             Desulfovibrio gigas
               Desulfovibrio gigas [TAX:1121448]
dgg
rep
             Desulfovibrio fairfieldensis
               Desulfovibrio fairfieldensis [TAX:44742]
dfi
rep
             Desulfovibrio indicus
               Desulfovibrio indicus [TAX:1716143]
dej
 
             Desulfovibrio piger
               Desulfovibrio piger [TAX:901]
dpg
rep
           Lawsonia
             Lawsonia intracellularis
               Lawsonia intracellularis PHE/MN1-00 [TAX:363253]
               Lawsonia intracellularis N343 [TAX:1234378]
lip*
lir
rep
 
         Desulfomicrobiaceae
           Desulfomicrobium
             Desulfomicrobium baculatum
               Desulfomicrobium baculatum [TAX:525897]
dba*
rep
             Desulfomicrobium orale
               Desulfomicrobium orale [TAX:888061]
doa
 
         Desulfohalobiaceae
           Desulfohalobium
             Desulfohalobium retbaense
               Desulfohalobium retbaense [TAX:485915]
drt*
rep
       Bdellovibrionales
         Bdellovibrionaceae
           Bdellovibrio
             Bdellovibrio bacteriovorus
               Bdellovibrio bacteriovorus HD100 [TAX:264462]
               Bdellovibrio bacteriovorus Tiberius [TAX:1069642]
               Bdellovibrio bacteriovorus W [TAX:765869]
               Bdellovibrio bacteriovorus 109J [TAX:959]
bba*
bbat
bbw
bbac
rep
 
rep
 
             Bdellovibrio exovorus
               Bdellovibrio exovorus [TAX:1184267]
bex
rep
         Halobacteriovoraceae
           Halobacteriovorax
             Halobacteriovorax marinus
               Halobacteriovorax marinus [TAX:862908]
bmx
rep
       Desulfobacterales
         Desulfobulbaceae
           Desulfotalea
             Desulfotalea psychrophila
               Desulfotalea psychrophila [TAX:177439]
dps*
rep
           Desulfurivibrio
             Desulfurivibrio alkaliphilus
               Desulfurivibrio alkaliphilus [TAX:589865]
dak*
rep
           Desulfobulbus
             Desulfobulbus propionicus
               Desulfobulbus propionicus [TAX:577650]
dpr*
rep
           Desulfocapsa
             Desulfocapsa sulfexigens
               Desulfocapsa sulfexigens [TAX:1167006]
dsf
rep
         Desulfobacteraceae
           Desulfococcus
             Desulfococcus oleovorans
               Desulfococcus oleovorans [TAX:96561]
dol*
rep
             Desulfococcus multivorans
               Desulfococcus multivorans [TAX:897]
dml
rep
           Desulfatibacillum
             Desulfatibacillum alkenivorans
               Desulfatibacillum alkenivorans [TAX:439235]
dal*
 
           Desulfobacterium
             Desulfobacterium autotrophicum
               Desulfobacterium autotrophicum [TAX:177437]
dat*
rep
           Desulfobacula
             Desulfobacula toluolica
               Desulfobacula toluolica [TAX:651182]
dto
rep
           Desulfobacter
             Desulfobacter postgatei
               Desulfobacter postgatei 2ac9 [TAX:879212]
 
rep
       Myxococcales
         Cystobacterineae
           Anaeromyxobacteraceae
             Anaeromyxobacter
               Anaeromyxobacter dehalogenans
                 Anaeromyxobacter dehalogenans 2CP-C [TAX:290397]
                 Anaeromyxobacter dehalogenans 2CP-1 [TAX:455488]
ade*
acp
 
rep
               Anaeromyxobacter sp. Fw109-5
                 Anaeromyxobacter sp. Fw109-5 [TAX:404589]
afw*
 
               Anaeromyxobacter sp. K
                 Anaeromyxobacter sp. K [TAX:447217]
ank*
 
           Myxococcaceae
             Myxococcus
               Myxococcus xanthus
                 Myxococcus xanthus [TAX:246197]
mxa*
rep
               Myxococcus fulvus
                 Myxococcus fulvus [TAX:483219]
mfu
rep
               Myxococcus stipitatus
                 Myxococcus stipitatus [TAX:1278073]
msd
rep
               Myxococcus hansupus
                 Myxococcus hansupus [TAX:1297742]
mym
 
             Corallococcus
               Corallococcus coralloides
                 Corallococcus coralloides [TAX:1144275]
ccx
rep
           Archangiaceae
             Stigmatella
               Stigmatella aurantiaca
                 Stigmatella aurantiaca [TAX:378806]
sur*
rep
             Archangium
               Archangium gephyra
                 Archangium gephyra [TAX:48]
age
rep
           Vulgatibacteraceae
             Vulgatibacter
               Vulgatibacter incomptus
                 Vulgatibacter incomptus [TAX:1391653]
vin
rep
         Sorangiineae
           Polyangiaceae
             Sorangium
               Sorangium cellulosum
                 Sorangium cellulosum So ce 56 [TAX:448385]
                 Sorangium cellulosum So0157-2 [TAX:1254432]
scl*
scu
rep
 
             Chondromyces
               Chondromyces crocatus
                 Chondromyces crocatus [TAX:52]
ccro
rep
           Sandaracinaceae
             Sandaracinus
               Sandaracinus amylolyticus
                 Sandaracinus amylolyticus [TAX:927083]
samy
rep
           Labilitrichaceae
             Labilithrix
               Labilithrix luteola
                 Labilithrix luteola [TAX:1391654]
llu
 
           Minicystis
             Minicystis rosea
               Minicystis rosea [TAX:888845]
mrm
 
         Nannocystineae
           Kofleriaceae
             Haliangium
               Haliangium ochraceum
                 Haliangium ochraceum [TAX:502025]
hoh*
 
       Syntrophobacterales
         Syntrophaceae
           Syntrophus
             Syntrophus aciditrophicus
               Syntrophus aciditrophicus [TAX:56780]
sat*
rep
           Desulfobacca
             Desulfobacca acetoxidans
               Desulfobacca acetoxidans [TAX:880072]
dao*
rep
           Desulfomonile
             Desulfomonile tiedjei
               Desulfomonile tiedjei [TAX:706587]
dti
rep
         Syntrophobacteraceae
           Syntrophobacter
             Syntrophobacter fumaroxidans
               Syntrophobacter fumaroxidans [TAX:335543]
sfu*
rep
       Desulfarculales
         Desulfarculaceae
           Desulfarculus
             Desulfarculus baarsii
               Desulfarculus baarsii [TAX:644282]
dbr*
rep
       Desulfurellales
         Desulfurellaceae
           Hippea
             Hippea maritima
               Hippea maritima [TAX:760142]
hmr*
rep
           Desulfurella
             Desulfurella acetivorans
               Desulfurella acetivorans [TAX:694431]
dav
rep
       Candidatus Babela
         Candidatus Babela massiliensis
           Candidatus Babela massiliensis [TAX:673862]
dpb
rep
     Alphaproteobacteria
       Rickettsiales
         Rickettsiaceae
           Rickettsieae
             Rickettsia
               typhus group
                 Rickettsia prowazekii
                   Rickettsia prowazekii Madrid E [TAX:272947]
                   Rickettsia prowazekii BuV67-CWPP [TAX:1105096]
                   Rickettsia prowazekii Chernikova [TAX:1105094]
                   Rickettsia prowazekii Dachau [TAX:1105097]
                   Rickettsia prowazekii GvV257 [TAX:1105098]
                   Rickettsia prowazekii Katsinyian [TAX:1105095]
                   Rickettsia prowazekii RpGvF24 [TAX:1105099]
                   Rickettsia prowazekii Rp22 [TAX:449216]
                   Rickettsia prowazekii Breinl [TAX:1290428]
                   Rickettsia prowazekii NMRC Madrid E [TAX:1290427]
rpr*
rpo
rpw
rpz
rpg
rps
rpv
rpq
rpl
rpn
ref
 
 
 
 
 
 
 
 
 
                 Rickettsia typhi
                   Rickettsia typhi Wilmington [TAX:257363]
                   Rickettsia typhi TH1527 [TAX:1003201]
                   Rickettsia typhi B9991CWPP [TAX:1003202]
rty*
rtt
rtb
rep
 
 
               belli group
                 Rickettsia canadensis
                   Rickettsia canadensis McKiel [TAX:293613]
                   Rickettsia canadensis CA410 [TAX:1105107]
rcm*
rcc
rep
 
                 Rickettsia bellii
                   Rickettsia bellii RML369-C [TAX:336407]
                   Rickettsia bellii OSU 85-389 [TAX:391896]
rbe*
rbo*
rep
 
               spotted fever group
                 Rickettsia conorii
                   Rickettsia conorii [TAX:272944]
rco*
rep
                 Rickettsia felis
                   Rickettsia felis [TAX:315456]
rfe*
rep
                 Rickettsia akari
                   Rickettsia akari [TAX:293614]
rak*
rep
                 Rickettsia rickettsii
                   Rickettsia rickettsii Sheila Smith [TAX:392021]
                   Rickettsia rickettsii Iowa [TAX:452659]
                   Rickettsia rickettsii Arizona [TAX:1105105]
                   Rickettsia rickettsii Colombia [TAX:1105102]
                   Rickettsia rickettsii Hauke [TAX:1105103]
                   Rickettsia rickettsii Brazil [TAX:1105104]
                   Rickettsia rickettsii Hino [TAX:1105100]
                   Rickettsia rickettsii Hlp#2 [TAX:1105101]
                   Rickettsia rickettsii Morgan [TAX:1337396]
                   Rickettsia rickettsii R [TAX:1338411]
rri*
rrj*
rra
rrc
rrh
rrb
rrn
rrp
rrm
rrr
 
 
 
 
 
 
 
 
 
 
                 Rickettsia massiliae
                   Rickettsia massiliae MTU5 [TAX:416276]
                   Rickettsia massiliae AZT80 [TAX:1105112]
rms*
rmi
 
rep
                 Rickettsia peacockii
                   Rickettsia peacockii [TAX:562019]
rpk*
 
                 Rickettsia africae
                   Rickettsia africae [TAX:347255]
raf*
 
                 Rickettsia heilongjiangensis
                   Rickettsia heilongjiangensis [TAX:1032845]
rhe
 
                 Rickettsia japonica
                   Rickettsia japonica [TAX:652620]
rja
rep
                 Rickettsia slovaca
                   Rickettsia slovaca 13-B [TAX:941638]
                   Rickettsia slovaca D-CWPP [TAX:1105109]
rsv
rsw
 
 
                 Rickettsia philipii
                   Rickettsia philipii [TAX:481009]
rph
 
                 Rickettsia australis
                   Rickettsia australis [TAX:1105110]
rau
rep
                 Rickettsia montanensis
                   Rickettsia montanensis [TAX:1105114]
rmo
 
                 Rickettsia parkeri
                   Rickettsia parkeri [TAX:1105108]
rpp
 
                 Rickettsia rhipicephali
                   Rickettsia rhipicephali [TAX:1105113]
rre
rep
                 Rickettsia amblyommatis
                   Rickettsia amblyommatis GAT-30V [TAX:1105111]
                   Rickettsia amblyommatis Ac37 [TAX:33989]
ram
rab
 
 
                 Rickettsia monacensis
                   Rickettsia monacensis [TAX:109232]
rmc
 
                 Rickettsia helvetica
                   Rickettsia helvetica C9P9 [TAX:1144888]
 
rep
             Orientia
               Orientia tsutsugamushi
                 Orientia tsutsugamushi Boryong [TAX:357244]
                 Orientia tsutsugamushi Ikeda [TAX:334380]
ots*
ott*
rep
 
         Anaplasmataceae
           Wolbachieae
             Wolbachia
               Wolbachia endosymbiont of Drosophila melanogaster
                 Wolbachia wMel (Drosophila melanogaster) [TAX:163164]
wol*
rep
               Wolbachia sp. wRi
                 Wolbachia wRi (Drosophila simulans) [TAX:66084]
wri*
 
               Wolbachia endosymbiont of Drosophila simulans
                 Wolbachia wHa (Drosophila simulans) [TAX:1236909]
                 Wolbachia wNo (Drosophila simulans) [TAX:1236908]
wen
wed
 
rep
               Wolbachia endosymbiont of Culex quinquefasciatus
                 Wolbachia wPip (Culex quinquefasciatus) [TAX:570417]
wpi*
rep
               Wolbachia endosymbiont of Brugia malayi
                 Wolbachia wBm (Brugia malayi) [TAX:292805]
wbm*
rep
               Wolbachia endosymbiont of Onchocerca ochengi
                 Wolbachia wOo (Onchocerca ochengi) [TAX:100901]
woo
rep
               Wolbachia endosymbiont of Cimex lectularius
                 Wolbachia wCle (Cimex lectularius) [TAX:246273]
wcl
rep
           Anaplasma
             Anaplasma marginale
               Anaplasma marginale St. Maries [TAX:234826]
               Anaplasma marginale Florida [TAX:320483]
               Anaplasma marginale Dawn [TAX:1412841]
               Anaplasma marginale Gypsy Plains [TAX:1412840]
ama*
amf*
amw
amp
 
rep
 
 
             Anaplasma centrale
               Anaplasma centrale [TAX:574556]
acn
rep
             Anaplasma ovis
               Anaplasma ovis [TAX:1248439]
aov
 
             phagocytophilum group
               Anaplasma phagocytophilum
                 Anaplasma phagocytophilum HZ [TAX:212042]
                 Anaplasma phagocytophilum HZ2 [TAX:1184253]
                 Anaplasma phagocytophilum Dog2 [TAX:1184254]
                 Anaplasma phagocytophilum JM [TAX:1173064]
aph*
apy
apd
apha
rep
 
 
 
           Ehrlichia
             Ehrlichia ruminantium
               Ehrlichia ruminantium Welgevonden (South Africa) [TAX:254945]
               Ehrlichia ruminantium Welgevonden (France) [TAX:254945]
               Ehrlichia ruminantium Gardel [TAX:302409]
eru*
erw*
erg*
rep
 
 
             Ehrlichia canis
               Ehrlichia canis [TAX:269484]
ecn*
rep
             Ehrlichia chaffeensis
               Ehrlichia chaffeensis Arkansas [TAX:205920]
               Ehrlichia chaffeensis Heartland [TAX:1249651]
               Ehrlichia chaffeensis Jax [TAX:1249652]
               Ehrlichia chaffeensis Liberty [TAX:1249653]
               Ehrlichia chaffeensis Osceola [TAX:1249654]
               Ehrlichia chaffeensis Saint Vincent [TAX:1249655]
               Ehrlichia chaffeensis Wakulla [TAX:1249656]
               Ehrlichia chaffeensis West Paces [TAX:1249650]
ech*
echa
echj
echl
echs
echv
echw
echp
rep
 
 
 
 
 
 
 
             Ehrlichia muris
               Ehrlichia muris [TAX:1423892]
emr
rep
             Ehrlichia sp. HF
               Ehrlichia sp. HF [TAX:391036]
ehh
 
           Neorickettsia
             Neorickettsia sennetsu
               Neorickettsia sennetsu [TAX:222891]
nse*
rep
             Neorickettsia risticii
               Neorickettsia risticii [TAX:434131]
nri*
rep
             Neorickettsia helminthoeca
               Neorickettsia helminthoeca [TAX:1286528]
nhm
rep
         Candidatus Midichloriaceae
           Candidatus Midichloria
             Candidatus Midichloria mitochondrii
               Candidatus Midichloria mitochondrii [TAX:696127]
mmn*
rep
         Rickettsiales bacterium Ac37b
           Rickettsiales bacterium Ac37b [TAX:1528098]
rbt
rep
       Holosporales
         Candidatus Paracaedibacteraceae
           Candidatus Paracaedibacter
             Candidatus Paracaedibacter acanthamoebae
               Candidatus Paracaedibacter acanthamoebae [TAX:91604]
paca
rep
         Caedibacter
           Candidatus Caedibacter acanthamoebae
             Candidatus Caedibacter acanthamoebae [TAX:244581]
caq
 
         Holosporaceae
           endosymbiont of Acanthamoeba sp. UWC8
             Endosymbiont of Acanthamoeba sp. UWC8 [TAX:86106]
eaa
 
       Rhizobiales
         Phyllobacteriaceae
           Mesorhizobium
             Mesorhizobium loti
               Mesorhizobium loti MAFF303099 [TAX:266835]
               Mesorhizobium loti NZP2037 [TAX:935546]
mlo*
mln
 
rep
             Mesorhizobium ciceri
               Mesorhizobium ciceri [TAX:765698]
mci
ref
             Mesorhizobium opportunistum
               Mesorhizobium opportunistum [TAX:536019]
mop
 
             Mesorhizobium australicum
               Mesorhizobium australicum [TAX:754035]
mam
 
             Mesorhizobium amorphae
               Mesorhizobium amorphae [TAX:1082933]
mamo
rep
             Mesorhizobium sp. B7
               Mesorhizobium sp. B7 [TAX:1670800]
meso
 
           Chelativorans
             Chelativorans sp. BNC1
               Chelativorans sp. BNC1 [TAX:266779]
mes*
 
           Hoeflea
             Hoeflea sp. IMCC20628
               Hoeflea sp. IMCC20628 [TAX:1620421]
hoe
 
             Hoeflea phototrophica
               Hoeflea phototrophica DFL-43 [TAX:411684]
 
rep
           Aminobacter
             Aminobacter aminovorans
               Aminobacter aminovorans [TAX:83263]
aak
 
         Rhodobiaceae
           Parvibaculum
             Parvibaculum lavamentivorans
               Parvibaculum lavamentivorans [TAX:402881]
pla*
rep
           Candidatus Phaeomarinobacter
             Candidatus Phaeomarinobacter ectocarpi
               Candidatus Phaeomarinobacter ectocarpi [TAX:1458461]
 
rep
         Rhizobiaceae
           Sinorhizobium/Ensifer group
             Sinorhizobium
               Sinorhizobium meliloti
                 Sinorhizobium meliloti 1021 [TAX:266834]
                 Sinorhizobium meliloti AK83 [TAX:693982]
                 Sinorhizobium meliloti BL225C [TAX:698936]
                 Sinorhizobium meliloti SM11 [TAX:707241]
                 Sinorhizobium meliloti Rm41 [TAX:1230587]
                 Sinorhizobium meliloti GR4 [TAX:1235461]
                 Sinorhizobium meliloti 2011 [TAX:1286640]
                 Sinorhizobium meliloti RMO17 [TAX:382]
sme*
smk
smq
smx
smi
smeg
smel
smer
ref
 
 
 
 
 
 
 
               Sinorhizobium medicae
                 Sinorhizobium medicae [TAX:366394]
smd*
ref
               Sinorhizobium fredii
                 Sinorhizobium fredii NGR234 [TAX:394]
                 Sinorhizobium fredii HH103 [TAX:1117943]
                 Sinorhizobium fredii USDA 257 [TAX:1185652]
rhi
sfh
sfd
ref
 
 
               Sinorhizobium sp. RAC02
                 Sinorhizobium sp. RAC02 [TAX:1842534]
six
 
               Sinorhizobium americanum
                 Sinorhizobium americanum [TAX:194963]
same
rep
             Ensifer
               Ensifer adhaerens
                 Ensifer adhaerens OV14 [TAX:1416753]
                 Ensifer adhaerens Casida A [TAX:106592]
ead
eah
 
rep
           Rhizobium/Agrobacterium group
             Agrobacterium
               Agrobacterium tumefaciens complex
                 Agrobacterium fabrum
                   Agrobacterium fabrum [TAX:176299]
atu*
ref
                 Agrobacterium tumefaciens
                   Agrobacterium radiobacter [TAX:311403]
                   Agrobacterium tumefaciens Ach5 [TAX:358]
                   Agrobacterium tumefaciens S33 [TAX:358]
ara*
atf
ata
 
 
 
               Agrobacterium vitis
                 Agrobacterium vitis [TAX:311402]
avi*
rep
               Agrobacterium sp. H13-3
                 Agrobacterium sp. H13-3 [TAX:861208]
agr