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KO |
09100 Metabolism
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09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:lch03030]
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03410 Base excision repair [PATH:lch03410]
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03420 Nucleotide excision repair [PATH:lch03420]
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03430 Mismatch repair [PATH:lch03430]
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03440 Homologous recombination [PATH:lch03440]
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Lcho_2400 single-stranded-DNA-specific exonuclease RecJ
Lcho_0555 single-strand binding protein
Lcho_0780 single-strand binding protein
Lcho_0596 DNA repair protein RecO
Lcho_1974 recombination protein RecR
Lcho_0497 recA protein
Lcho_1062 DNA polymerase I
Lcho_3953 Holliday junction DNA helicase RuvA
Lcho_3954 Holliday junction DNA helicase RuvB
Lcho_0531 crossover junction endodeoxyribonuclease RuvC
Lcho_1580 ATP-dependent DNA helicase RecG
Lcho_0490 putative transcriptional regulator
Lcho_1777 exodeoxyribonuclease V, beta subunit
Lcho_1776 exodeoxyribonuclease V, gamma subunit
Lcho_1778 exodeoxyribonuclease V, alpha subunit
Lcho_0980 DNA polymerase III, alpha subunit
Lcho_0002 DNA polymerase III, beta subunit
Lcho_1976 DNA polymerase III, subunits gamma and tau
Lcho_0481 DNA polymerase III, delta subunit
Lcho_1879 DNA polymerase III, delta prime subunit
Lcho_0238 DNA polymerase III, epsilon subunit
Lcho_1041 DNA polymerase III, epsilon subunit
Lcho_2503 Exonuclease RNase T and DNA polymerase III
Lcho_0024 DNA polymerase III, epsilon subunit
Lcho_2594 DNA polymerase III chi subunit HolC
Lcho_3523 primosomal protein N'
Lcho_2829 primosomal replication protein N
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:lch03000]
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03021 Transcription machinery [BR:lch03021]
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03019 Messenger RNA biogenesis [BR:lch03019]
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03041 Spliceosome
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03011 Ribosome [BR:lch03011]
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03009 Ribosome biogenesis [BR:lch03009]
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03016 Transfer RNA biogenesis [BR:lch03016]
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03012 Translation factors [BR:lch03012]
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03110 Chaperones and folding catalysts [BR:lch03110]
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04131 Membrane trafficking [BR:lch04131]
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04121 Ubiquitin system [BR:lch04121]
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03051 Proteasome [BR:lch03051]
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03032 DNA replication proteins [BR:lch03032]
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03036 Chromosome and associated proteins [BR:lch03036]
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03400 DNA repair and recombination proteins [BR:lch03400]
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Lcho_1108 methylated-DNA--protein-cysteine methyltransferase
Lcho_1248 Deoxyribodipyrimidine photo-lyase
Lcho_1249 Deoxyribodipyrimidine photolyase-like protein
Lcho_3963 Deoxyribodipyrimidine photo-lyase
Lcho_3875 uracil-DNA glycosylase
Lcho_3492 A/G-specific adenine glycosylase
Lcho_2655 endonuclease III
Lcho_2510 helicase c2
Lcho_0544 NUDIX hydrolase
Lcho_2644 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Lcho_1250 deoxyribodipyrimidine photolyase-related protein
Lcho_0372 phage SPO1 DNA polymerase-related protein
Lcho_1671 HhH-GPD family protein
Lcho_1107 transcriptional regulator, AraC family
Lcho_3494 formamidopyrimidine-DNA glycosylase
Lcho_1246 exodeoxyribonuclease III Xth
Lcho_4050 exodeoxyribonuclease III Xth
Lcho_1255 deoxyinosine 3'endonuclease (endonuclease V)
Lcho_2400 single-stranded-DNA-specific exonuclease RecJ
Lcho_2505 DNA ligase, NAD-dependent
Lcho_1062 DNA polymerase I
Lcho_0303 excinuclease ABC, A subunit
Lcho_4192 excinuclease ABC, A subunit
Lcho_1050 excinuclease ABC, B subunit
Lcho_1932 excinuclease ABC, C subunit
Lcho_4261 Excinuclease ABC C subunit domain protein
Lcho_2767 UvrD/REP helicase
Lcho_1959 conserved hypothetical protein
Lcho_3867 DNA-directed RNA polymerase, beta subunit
Lcho_3866 DNA-directed RNA polymerase, beta' subunit
Lcho_3923 DNA-directed RNA polymerase, alpha subunit
Lcho_0730 DNA-directed RNA polymerase, omega subunit
Lcho_2006 transcription-repair coupling factor
Lcho_1181 DNA mismatch repair protein MutS
Lcho_1125 DNA mismatch repair protein MutL
Lcho_2713 Exodeoxyribonuclease I
Lcho_2552 exodeoxyribonuclease VII, large subunit
Lcho_3371 exodeoxyribonuclease VII, small subunit
Lcho_0980 DNA polymerase III, alpha subunit
Lcho_0002 DNA polymerase III, beta subunit
Lcho_2594 DNA polymerase III chi subunit HolC
Lcho_0481 DNA polymerase III, delta subunit
Lcho_1879 DNA polymerase III, delta prime subunit
Lcho_0238 DNA polymerase III, epsilon subunit
Lcho_1041 DNA polymerase III, epsilon subunit
Lcho_2503 Exonuclease RNase T and DNA polymerase III
Lcho_0024 DNA polymerase III, epsilon subunit
Lcho_1976 DNA polymerase III, subunits gamma and tau
Lcho_0555 single-strand binding protein
Lcho_0780 single-strand binding protein
Lcho_1777 exodeoxyribonuclease V, beta subunit
Lcho_1776 exodeoxyribonuclease V, gamma subunit
Lcho_1778 exodeoxyribonuclease V, alpha subunit
Lcho_0497 recA protein
Lcho_3953 Holliday junction DNA helicase RuvA
Lcho_3954 Holliday junction DNA helicase RuvB
Lcho_0531 crossover junction endodeoxyribonuclease RuvC
Lcho_3523 primosomal protein N'
Lcho_2829 primosomal replication protein N
Lcho_0917 DNA repair protein RadA
Lcho_1580 ATP-dependent DNA helicase RecG
Lcho_0490 putative transcriptional regulator
Lcho_0596 DNA repair protein RecO
Lcho_1974 recombination protein RecR
Lcho_3489 DNA repair protein RecN
Lcho_1562 putative exonuclease RdgC
Lcho_1154 CRISPR-associated protein Cas1
Lcho_1954 protein of unknown function DUF853 NPT hydrolase putative
Lcho_0959 DNA gyrase, A subunit
Lcho_0003 DNA gyrase, B subunit
Lcho_1929 histone family protein DNA-binding protein
Lcho_3566 histone family protein DNA-binding protein
Lcho_0533 transcriptional regulator, Fis family
Lcho_1751 integration host factor, alpha subunit
Lcho_0965 integration host factor, beta subunit
Lcho_0556 ATP-dependent DNA helicase RecQ
Lcho_2290 histone family protein nucleoid-structuring protein H-NS
Lcho_2742 histone family protein nucleoid-structuring protein H-NS
Lcho_2803 hypothetical protein
Lcho_0937 DNA-directed DNA polymerase
Lcho_2082 transcriptional repressor, LexA family
Lcho_2901 conserved hypothetical protein
Lcho_2902 conserved hypothetical protein
Lcho_2903 DNA polymerase III, alpha subunit
Lcho_0496 regulatory protein RecX
Lcho_0339 UvrD/REP helicase
Lcho_2877 helicase c2
Lcho_4257 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
Lcho_0382 ribonucleoside-diphosphate reductase, alpha subunit
Lcho_0383 Ribonucleoside-diphosphate reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04485 radA; DNA repair protein RadA/Sms
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:lch03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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