KEGG Orthology (KO) - Leptothrix cholodnii

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:lch03030]
     03410 Base excision repair [PATH:lch03410]
     03420 Nucleotide excision repair [PATH:lch03420]
     03430 Mismatch repair [PATH:lch03430]
     03440 Homologous recombination [PATH:lch03440]
       Lcho_2400 single-stranded-DNA-specific exonuclease RecJ
       Lcho_0555 single-strand binding protein
       Lcho_0780 single-strand binding protein
       Lcho_0596 DNA repair protein RecO
       Lcho_1974 recombination protein RecR
       Lcho_0497 recA protein
       Lcho_1062 DNA polymerase I
       Lcho_3953 Holliday junction DNA helicase RuvA
       Lcho_3954 Holliday junction DNA helicase RuvB
       Lcho_0531 crossover junction endodeoxyribonuclease RuvC
       Lcho_1580 ATP-dependent DNA helicase RecG
       Lcho_0490 putative transcriptional regulator
       Lcho_1777 exodeoxyribonuclease V, beta subunit
       Lcho_1776 exodeoxyribonuclease V, gamma subunit
       Lcho_1778 exodeoxyribonuclease V, alpha subunit
       Lcho_0980 DNA polymerase III, alpha subunit
       Lcho_0002 DNA polymerase III, beta subunit
       Lcho_1976 DNA polymerase III, subunits gamma and tau
       Lcho_0481 DNA polymerase III, delta subunit
       Lcho_1879 DNA polymerase III, delta prime subunit
       Lcho_0238 DNA polymerase III, epsilon subunit
       Lcho_1041 DNA polymerase III, epsilon subunit
       Lcho_2503 Exonuclease RNase T and DNA polymerase III
       Lcho_0024 DNA polymerase III, epsilon subunit
       Lcho_2594 DNA polymerase III chi subunit HolC
       Lcho_3523 primosomal protein N'
       Lcho_2829 primosomal replication protein N
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
     03450 Non-homologous end-joining
     03460 Fanconi anemia pathway
 
   09126 Chromosome
 
   09125 Information processing in viruses
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:lch03000]
     03021 Transcription machinery [BR:lch03021]
     03019 Messenger RNA biogenesis [BR:lch03019]
     03041 Spliceosome
     03011 Ribosome [BR:lch03011]
     03009 Ribosome biogenesis [BR:lch03009]
     03016 Transfer RNA biogenesis [BR:lch03016]
     03012 Translation factors [BR:lch03012]
     03110 Chaperones and folding catalysts [BR:lch03110]
     04131 Membrane trafficking [BR:lch04131]
     04121 Ubiquitin system [BR:lch04121]
     03051 Proteasome [BR:lch03051]
     03032 DNA replication proteins [BR:lch03032]
     03036 Chromosome and associated proteins [BR:lch03036]
     03400 DNA repair and recombination proteins [BR:lch03400]
       Lcho_1108 methylated-DNA--protein-cysteine methyltransferase
       Lcho_1248 Deoxyribodipyrimidine photo-lyase
       Lcho_1249 Deoxyribodipyrimidine photolyase-like protein
       Lcho_3963 Deoxyribodipyrimidine photo-lyase
       Lcho_3875 uracil-DNA glycosylase
       Lcho_3492 A/G-specific adenine glycosylase
       Lcho_2655 endonuclease III
       Lcho_2510 helicase c2
       Lcho_0544 NUDIX hydrolase
       Lcho_2644 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
       Lcho_1250 deoxyribodipyrimidine photolyase-related protein
       Lcho_0372 phage SPO1 DNA polymerase-related protein
       Lcho_1671 HhH-GPD family protein
       Lcho_1107 transcriptional regulator, AraC family
       Lcho_3494 formamidopyrimidine-DNA glycosylase
       Lcho_1246 exodeoxyribonuclease III Xth
       Lcho_4050 exodeoxyribonuclease III Xth
       Lcho_1255 deoxyinosine 3'endonuclease (endonuclease V)
       Lcho_2400 single-stranded-DNA-specific exonuclease RecJ
       Lcho_2505 DNA ligase, NAD-dependent
       Lcho_1062 DNA polymerase I
       Lcho_0303 excinuclease ABC, A subunit
       Lcho_4192 excinuclease ABC, A subunit
       Lcho_1050 excinuclease ABC, B subunit
       Lcho_1932 excinuclease ABC, C subunit
       Lcho_4261 Excinuclease ABC C subunit domain protein
       Lcho_2767 UvrD/REP helicase
       Lcho_1959 conserved hypothetical protein
       Lcho_3867 DNA-directed RNA polymerase, beta subunit
       Lcho_3866 DNA-directed RNA polymerase, beta' subunit
       Lcho_3923 DNA-directed RNA polymerase, alpha subunit
       Lcho_0730 DNA-directed RNA polymerase, omega subunit
       Lcho_2006 transcription-repair coupling factor
       Lcho_1181 DNA mismatch repair protein MutS
       Lcho_1125 DNA mismatch repair protein MutL
       Lcho_2713 Exodeoxyribonuclease I
       Lcho_2552 exodeoxyribonuclease VII, large subunit
       Lcho_3371 exodeoxyribonuclease VII, small subunit
       Lcho_0980 DNA polymerase III, alpha subunit
       Lcho_0002 DNA polymerase III, beta subunit
       Lcho_2594 DNA polymerase III chi subunit HolC
       Lcho_0481 DNA polymerase III, delta subunit
       Lcho_1879 DNA polymerase III, delta prime subunit
       Lcho_0238 DNA polymerase III, epsilon subunit
       Lcho_1041 DNA polymerase III, epsilon subunit
       Lcho_2503 Exonuclease RNase T and DNA polymerase III
       Lcho_0024 DNA polymerase III, epsilon subunit
       Lcho_1976 DNA polymerase III, subunits gamma and tau
       Lcho_0555 single-strand binding protein
       Lcho_0780 single-strand binding protein
       Lcho_1777 exodeoxyribonuclease V, beta subunit
       Lcho_1776 exodeoxyribonuclease V, gamma subunit
       Lcho_1778 exodeoxyribonuclease V, alpha subunit
       Lcho_0497 recA protein
       Lcho_3953 Holliday junction DNA helicase RuvA
       Lcho_3954 Holliday junction DNA helicase RuvB
       Lcho_0531 crossover junction endodeoxyribonuclease RuvC
       Lcho_3523 primosomal protein N'
       Lcho_2829 primosomal replication protein N
       Lcho_0917 DNA repair protein RadA
       Lcho_1580 ATP-dependent DNA helicase RecG
       Lcho_0490 putative transcriptional regulator
       Lcho_0596 DNA repair protein RecO
       Lcho_1974 recombination protein RecR
       Lcho_3489 DNA repair protein RecN
       Lcho_1562 putative exonuclease RdgC
       Lcho_1154 CRISPR-associated protein Cas1
       Lcho_1954 protein of unknown function DUF853 NPT hydrolase putative
       Lcho_0959 DNA gyrase, A subunit
       Lcho_0003 DNA gyrase, B subunit
       Lcho_1929 histone family protein DNA-binding protein
       Lcho_3566 histone family protein DNA-binding protein
       Lcho_0533 transcriptional regulator, Fis family
       Lcho_1751 integration host factor, alpha subunit
       Lcho_0965 integration host factor, beta subunit
       Lcho_0556 ATP-dependent DNA helicase RecQ
       Lcho_2290 histone family protein nucleoid-structuring protein H-NS
       Lcho_2742 histone family protein nucleoid-structuring protein H-NS
       Lcho_2803 hypothetical protein
       Lcho_0937 DNA-directed DNA polymerase
       Lcho_2082 transcriptional repressor, LexA family
       Lcho_2901 conserved hypothetical protein
       Lcho_2902 conserved hypothetical protein
       Lcho_2903 DNA polymerase III, alpha subunit
       Lcho_0496 regulatory protein RecX
       Lcho_0339 UvrD/REP helicase
       Lcho_2877 helicase c2
       Lcho_4257 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
       Lcho_0382 ribonucleoside-diphosphate reductase, alpha subunit
       Lcho_0383 Ribonucleoside-diphosphate reductase
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04485 radA; DNA repair protein RadA/Sms
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:lch03029]
 
   09183 Protein families: signaling and cellular processes
 
   09185 Viral protein families
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: March 27, 2024