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09100 Metabolism
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09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:lie03030]
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03410 Base excision repair [PATH:lie03410]
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03420 Nucleotide excision repair [PATH:lie03420]
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03430 Mismatch repair [PATH:lie03430]
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03440 Homologous recombination [PATH:lie03440]
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LIF_A2438 recJ; single-stranded DNA exonuclease
LIF_A2932 ssb; single-stranded DNA-binding protein
LIF_A1357 ssb; single-stranded DNA-binding protein
LIF_A0003 recF; recombination protein RecF
LIF_A1366 recombinational DNA repair protein
LIF_A3462 recR; recombinational DNA repair protein
LIF_A1776 recA; recombinase A
LIF_A2914 polA; DNA polymerase I
LIF_A2360 ruvA; holliday junction DNA helicase RuvA
LIF_A0663 ruvB; holliday junction DNA helicase B
LIF_A0587 ruvC; putative holliday junction endodeoxyribonuclease protein
LIF_A3151 recG; ATP-dependent DNA helicase RecG
LIF_A0785 exodeoxyribonuclease V beta chain
LIF_A0784 exodeoxyribonuclease v gamma chain
LIF_A0786 exodeoxyribonuclease v alpha chain
LIF_A0221 dnaE; DNA polymerase III alpha subunit
LIF_A0002 dnaN; DNA polymerase III beta subunit
LIF_A3460 dnaX; DNA polymerase III gamma subunit
LIF_A3482 DNA polymerase III gamma and tau subunits
LIF_A0014 DNA-directed DNA polymerase delta subunit
LIF_A1960 priA; primosomal protein N
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:lie03000]
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03021 Transcription machinery [BR:lie03021]
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03019 Messenger RNA biogenesis [BR:lie03019]
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03041 Spliceosome [BR:lie03041]
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03011 Ribosome [BR:lie03011]
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03009 Ribosome biogenesis [BR:lie03009]
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03016 Transfer RNA biogenesis [BR:lie03016]
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03012 Translation factors [BR:lie03012]
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03110 Chaperones and folding catalysts [BR:lie03110]
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04131 Membrane trafficking [BR:lie04131]
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04121 Ubiquitin system
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03051 Proteasome [BR:lie03051]
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03032 DNA replication proteins [BR:lie03032]
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03036 Chromosome and associated proteins [BR:lie03036]
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03400 DNA repair and recombination proteins [BR:lie03400]
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LIF_A2168 deoxyribodipyrimidine photolyase
LIF_A3105 uracil-DNA glycosylase
LIF_A1902 mutY; A/G specific adenine glycosylase
LIF_A1760 nth; endonuclease III
LIF_A1729 ssl2; DNA or RNA helicase
LIF_A1832 endonuclease
LIF_A1276 NUDIX hydrolase
LIF_A0107 putative nudix hydrolase
LIF_B068 ADP-ribose pyrophosphatase
LIF_A0906 dut; dUTP diphosphatase
LIF_A3392 ada; methylated-DNA--protein-cysteine S-methyltransferase
LIF_A2947 uracil-DNA glycosylase
LIF_A0238 alkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
LIF_A1102 alkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
LIF_A3068 tag; 3-methyl-adenine DNA glycosylase I
LIF_A2061 xthA; exodeoxyribonuclease
LIF_A2438 recJ; single-stranded DNA exonuclease
LIF_A3281 lig; NAD dependent DNA ligase
LIF_A2914 polA; DNA polymerase I
LIF_A1804 uvrA; excinuclease ABC subunit A
LIF_A0530 uvrB; excinuclease ABC subunit B
LIF_A1763 uvrC; excinuclease ABC subunit C
LIF_A1789 uvrD; DNA helicase UvrD
LIF_A1891 uvrD; DNA helicase UvrD
LIF_A0410 uvrD; DNA helicase UvrD
LIF_A0877 uvrD; DNA helicase UvrD
LIF_A2740 rpoB; DNA-directed RNA polymerase subunit beta
LIF_A2739 rpoC; DNA-directed RNA polymerase subunit beta'
LIF_A0628 rpoA; RNA polymerase alpha subunit
LIF_A2058 mfd; transcription-repair coupling factor
LIF_A1745 mutS; DNA mismatch repair protein mutS
LIF_A0951 mutL; DNA mismatch repair protein mutL
LIF_A1925 xseA; exodeoxyribonuclease VII large subunit
LIF_A1926 xseB; exodeoxyribonuclease VII small subunit
LIF_A0221 dnaE; DNA polymerase III alpha subunit
LIF_A0002 dnaN; DNA polymerase III beta subunit
LIF_A0014 DNA-directed DNA polymerase delta subunit
LIF_A3460 dnaX; DNA polymerase III gamma subunit
LIF_A3482 DNA polymerase III gamma and tau subunits
LIF_A2932 ssb; single-stranded DNA-binding protein
LIF_A1357 ssb; single-stranded DNA-binding protein
LIF_A0785 exodeoxyribonuclease V beta chain
LIF_A0784 exodeoxyribonuclease v gamma chain
LIF_A0786 exodeoxyribonuclease v alpha chain
LIF_A1776 recA; recombinase A
LIF_A2360 ruvA; holliday junction DNA helicase RuvA
LIF_A0663 ruvB; holliday junction DNA helicase B
LIF_A0587 ruvC; putative holliday junction endodeoxyribonuclease protein
LIF_A1960 priA; primosomal protein N
LIF_A2369 DNA repair protein RadA
LIF_A0003 recF; recombination protein RecF
LIF_A3151 recG; ATP-dependent DNA helicase RecG
LIF_A1366 recombinational DNA repair protein
LIF_A3462 recR; recombinational DNA repair protein
LIF_A1895 recN; DNA repair protein RecN
LIF_A2559 conserved hypothetical protein
LIF_A0555 CRISPR-associated protein Cas1
LIF_A0796 cdc9; ATP-dependent DNA ligase
LIF_A0006 gyrA; DNA gyrase subunit A
LIF_A3343 gyrA; DNA gyrase subunit A
LIF_A0005 gyrB; DNA gyrase subunit B
LIF_A3344 DNA gyrase subunit B
LIF_A1392 topA; DNA topoisomerase
LIF_A0510 recQ; ATP-dependent DNA helicase RecQ
LIF_A0783 recQ; ATP-dependent DNA helicase RecQ
LIF_A0420 dinP; DNA polymerase IV
LIF_A1158 lexA; transcriptional repressor LexA
LIF_A1508 dinG; ATP-dependent helicase
LIF_A1928 nrdA; ribonucleotide reductase subunit alpha
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K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K05986 NUCS; nuclease S1 [EC:3.1.30.1]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:lie03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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