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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:ljf03030]
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03410 Base excision repair [PATH:ljf03410]
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03420 Nucleotide excision repair [PATH:ljf03420]
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03430 Mismatch repair [PATH:ljf03430]
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03440 Homologous recombination [PATH:ljf03440]
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 FI9785_792 recJ; single-strand DNA-specific exonuclease RecJ
FI9785_70 ssb; ssb
FI9785_p9785L.16 putative single-stranded DNA-binding protein
FI9785_66 recF; DNA replication and repair protein RecF
FI9785_890 recO; DNA repair protein RecO
FI9785_448 recR; Recombination protein recR.
FI9785_1364 recA; bacterial DNA recombination protein RecA
FI9785_1446 polA; DNA polymerase I
FI9785_483 ruvA; Holliday junction ATP-dependent DNA helicase ruvA
FI9785_484 ruvB; Holliday junction ATP-dependent DNA helicase ruvB
FI9785_735 recG; ATP-dependent DNA helicase RecG
FI9785_1215 ATP-dependent RecD/TraA family DNA helicase
FI9785_1131 dnaE; dnaE
FI9785_774 polC; DNA polymerase III, alpha subunit
FI9785_64 dnaN; DNA polymerase III, beta chain
FI9785_446 dnaX; DNA polymerase III, gamma and tau subunits
FI9785_1202 holA; DNA polymerase III delta subunit
FI9785_452 holB; DNA polymerase III delta' subunit
FI9785_1583 hypothetical protein predicted by Glimmer/Critica
FI9785_1322 dnaQ; DNA polymerase III epsilon subunit
FI9785_724 priA; Primosomal protein N' (ATP-dependent helicase priA) (Replication factor Y)
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:ljf03000]
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03021 Transcription machinery [BR:ljf03021]
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03019 Messenger RNA biogenesis [BR:ljf03019]
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03041 Spliceosome
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03011 Ribosome [BR:ljf03011]
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03009 Ribosome biogenesis [BR:ljf03009]
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03016 Transfer RNA biogenesis [BR:ljf03016]
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03012 Translation factors [BR:ljf03012]
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03110 Chaperones and folding catalysts [BR:ljf03110]
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04131 Membrane trafficking [BR:ljf04131]
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04121 Ubiquitin system
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03051 Proteasome
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03032 DNA replication proteins [BR:ljf03032]
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03036 Chromosome and associated proteins [BR:ljf03036]
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03400 DNA repair and recombination proteins [BR:ljf03400]
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FI9785_1325 ung; uracil-DNA glycosylase
FI9785_148 putative 3-methyladenine DNA glycosylase
FI9785_982 nth; endonuclease III
FI9785_1154 conserved hypothetical protein
FI9785_1489 hypothetical protein predicted by Glimmer/Critica
FI9785_415 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
FI9785_151 adaB; methylated-DNA--protein-cysteine S-methyltransferase
FI9785_757 hypothetical protein predicted by Glimmer/Critica
FI9785_547 DNA-3-methyladenine glycosylase I
FI9785_1445 mutM; mutM
FI9785_102 exodeoxyribonuclease
FI9785_792 recJ; single-strand DNA-specific exonuclease RecJ
FI9785_1509 ligA; DNA ligase, NAD-dependent
FI9785_1446 polA; DNA polymerase I
FI9785_1344 uvrA; excinuclease ABC, A subunit, UvrABC system protein A
FI9785_1049 uvrA; UvrABC system protein A
FI9785_1345 uvrB; excinuclease ABC, B subunit, UvrABC system
FI9785_1141 uvrC; UvrABC system protein C
FI9785_1611 hypothetical protein predicted by Glimmer/Critica
FI9785_1510 pcrA; ATP-dependent DNA helicase PcrA
FI9785_350 rpoB; DNA-directed RNA polymerase, beta subunit
FI9785_351 rpoC; DNA-directed RNA polymerase beta' chain
FI9785_383 rpoA; DNA-directed RNA polymerase, alpha subunit
FI9785_298 rpoE; DNA-directed RNA polymerase delta subunit
FI9785_723 rpoZ; DNA-directed RNA polymerase, omega subunit
FI9785_339 trcF; Transcription-repair-coupling factor
FI9785_481 mutS; DNA mismatch repair protein MutS
FI9785_495 mutS2; MutS2 protein
FI9785_1802 hypothetical protein predicted by Glimmer/Critica
FI9785_482 mutL; DNA mismatch repair protein MutL
FI9785_714 xseA; exodeoxyribonuclease VII, large subunit
FI9785_715 xseB; exodeoxyribonuclease VII (small subunit)
FI9785_1131 dnaE; dnaE
FI9785_774 polC; DNA polymerase III, alpha subunit
FI9785_64 dnaN; DNA polymerase III, beta chain
FI9785_1202 holA; DNA polymerase III delta subunit
FI9785_452 holB; DNA polymerase III delta' subunit
FI9785_1583 hypothetical protein predicted by Glimmer/Critica
FI9785_1322 dnaQ; DNA polymerase III epsilon subunit
FI9785_446 dnaX; DNA polymerase III, gamma and tau subunits
FI9785_70 ssb; ssb
FI9785_p9785L.16 putative single-stranded DNA-binding protein
FI9785_1215 ATP-dependent RecD/TraA family DNA helicase
FI9785_1364 recA; bacterial DNA recombination protein RecA
FI9785_483 ruvA; Holliday junction ATP-dependent DNA helicase ruvA
FI9785_484 ruvB; Holliday junction ATP-dependent DNA helicase ruvB
FI9785_724 priA; Primosomal protein N' (ATP-dependent helicase priA) (Replication factor Y)
FI9785_416 radA; DNA repair protein radA
FI9785_66 recF; DNA replication and repair protein RecF
FI9785_735 recG; ATP-dependent DNA helicase RecG
FI9785_890 recO; DNA repair protein RecO
FI9785_448 recR; Recombination protein recR.
FI9785_718 recN; DNA repair protein recN
FI9785_986 recU; Holliday junction-specific endonuclease RecU
FI9785_977 rexA; ATP-dependent nuclease subunit A
FI9785_976 rexB; ATP-dependent nuclease subunit B
FI9785_68 gyrA; DNA gyrase, subunit A
FI9785_67 gyrB; DNA gyrase, subunit B
FI9785_1098 topA; DNA topoisomerase I
FI9785_1117 hupB; DNA-binding protein HU
FI9785_1009 recQ; ATP-dependent DNA helicase RecQ
FI9785_487 dinP; DNA polymerase IV
FI9785_758 lexA; LexA repressor
FI9785_1396 recX; Regulatory protein RecX
FI9785_978 dinG; ATP-dependent DNA helicase DinG
FI9785_1543 hypothetical protein predicted by Glimmer/Critica
FI9785_1634 nrdF; ribonucleoside-diphosphate reductase beta chain
FI9785_488 hypothetical protein predicted by Glimmer/Critica
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K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:ljf03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Lactobacillus johnsonii FI9785