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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:lmq03030]
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03410 Base excision repair [PATH:lmq03410]
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03420 Nucleotide excision repair [PATH:lmq03420]
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03430 Mismatch repair [PATH:lmq03430]
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03440 Homologous recombination [PATH:lmq03440]
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 LMM7_1611 recJ; single-stranded DNA-specific exonuclease
LMM7_0039 ssb; single-strand binding protein
LMM7_2676 single-stranded DNA-binding protein (SSB)(Helix-destabilizingprotein)
LMM7_2565 ssb; single-stranded DNA-binding protein
LMM7_0005 recF; DNA replication and repair protein
LMM7_1545 recO; recombinational DNA repair protein
LMM7_2813 recR; recombinational DNA repair protein
LMM7_1484 recA; DNA recombination protein
LMM7_1651 polA; DNA polymerase I
LMM7_1619 ruvA; Holliday junction resolvasome, DNA-binding subunit
LMM7_1618 ruvB; Holliday junction resolvasome, helicase subunit
LMM7_1904 recG; ATP-dependent DNA helicase
LMM7_1595 recD; putative exodeoxyribonuclease V
LMM7_1661 dnaE; DNA polymerase III alpha subunit
LMM7_1405 polC; DNA polymerase III alpha subunit
LMM7_0002 dnaN; DNA polymerase III subunit beta
LMM7_2815 dnaX; DNA polymerase III gamma and tau subunit
LMM7_1566 holA; DNA polymerase III, delta subunit
LMM7_0187 holB; DNA polymerase III delta subunit
LMM7_1917 priA; putative primosomal replication factor Y
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:lmq03000]
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03021 Transcription machinery [BR:lmq03021]
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03019 Messenger RNA biogenesis [BR:lmq03019]
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03041 Spliceosome
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03011 Ribosome [BR:lmq03011]
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03009 Ribosome biogenesis [BR:lmq03009]
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03016 Transfer RNA biogenesis [BR:lmq03016]
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03012 Translation factors [BR:lmq03012]
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03110 Chaperones and folding catalysts [BR:lmq03110]
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04131 Membrane trafficking [BR:lmq04131]
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04121 Ubiquitin system [BR:lmq04121]
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03051 Proteasome [BR:lmq03051]
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03032 DNA replication proteins [BR:lmq03032]
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03036 Chromosome and associated proteins [BR:lmq03036]
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03400 DNA repair and recombination proteins [BR:lmq03400]
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LMM7_1033 ogt; putative O-6-alkylguanine-DNA:protein-cystein methyltransferase
LMM7_0618 phr; putative deoxyribodipyrimidine photolyase
LMM7_0416 ung; uracil DNA glycosylase
LMM7_1230 ung; putative uracil-DNA glycosylase
LMM7_0964 putative 3-methyladenine DNA glycosylase
LMM7_1778 mutY; putative A/G-specific adenine glycosylase
LMM7_1987 nth; endonuclease III (DNA repair)
LMM7_0182 yoaA; putative DNA repair ATP-dependent helicase
LMM7_1713 hypothetical protein
LMM7_1329 mutT; putative dNTP (dGTP) triphosphatase
LMM7_2412 MutT/nudix family protein
LMM7_1758 ytkD; nucleoside triphosphatase YtkD
LMM7_1780 dut; putative deoxyuridine triphosphate nucleotidohydrolase
LMM7_0062 ada; Ada protein (O6-methylguanine-DNA methyltransferase)
LMM7_2345 ada; putative methylphosphotriester-DNA alkyltransferase and transcriptional regulator
LMM7_2344 ogt; O6-methylguanine-DNA methyltransferase
LMM7_1731 tag; DNA-3-methyladenine glycosidase
LMM7_1650 mutM; formamidopyrimidine-DNA glycosylase
LMM7_1870 xthA; putative 3'-exo-deoxyribonuclease III
LMM7_1535 nfo; putative endonuclease IV
LMM7_1611 recJ; single-stranded DNA-specific exonuclease
LMM7_1846 ligA; putative DNA ligase (NAD+)
LMM7_1651 polA; DNA polymerase I
LMM7_2530 uvrA; excinuclease ABC, A subunit
LMM7_2531 uvrB; excinuclease ABC, B subunit
LMM7_1237 uvrC; excinuclease ABC, C subunit
LMM7_1847 pcrA; ATP-dependent DNA helicase
LMM7_0290 rpoB; RNA polymerase, beta subunit
LMM7_0291 rpoC; RNA polymerase, beta subunit
LMM7_2718 rpoA; RNA polymerase, alpha subunit
LMM7_2603 rpoE; RNA polymerase, delta subunit
LMM7_1919 rpoZ; RNA polymerase, omega subunit
LMM7_0235 mfd; transcription-repair coupling factor (superfamily II helicase)
LMM7_1489 mutS; DNA mismatch repair (recognition)
LMM7_1235 recombination and DNA strand exchange inhibitor protein
LMM7_1490 mutL; DNA mismatch repair protein
LMM7_1446 xseA; exonuclease VII, large subunit
LMM7_1447 xseB; exonuclease VII small subunit
LMM7_1661 dnaE; DNA polymerase III alpha subunit
LMM7_1405 polC; DNA polymerase III alpha subunit
LMM7_0002 dnaN; DNA polymerase III subunit beta
LMM7_1566 holA; DNA polymerase III, delta subunit
LMM7_0187 holB; DNA polymerase III delta subunit
LMM7_2815 dnaX; DNA polymerase III gamma and tau subunit
LMM7_0039 ssb; single-strand binding protein
LMM7_2676 single-stranded DNA-binding protein (SSB)(Helix-destabilizingprotein)
LMM7_2565 ssb; single-stranded DNA-binding protein
LMM7_1595 recD; putative exodeoxyribonuclease V
LMM7_1484 recA; DNA recombination protein
LMM7_1619 ruvA; Holliday junction resolvasome, DNA-binding subunit
LMM7_1618 ruvB; Holliday junction resolvasome, helicase subunit
LMM7_1917 priA; putative primosomal replication factor Y
LMM7_1737 sbcC; putative ATP-dependent dsDNA exonuclease component
LMM7_1738 sbcD; putative ATP-dependent dsDNA exonuclease component
LMM7_0255 radA; DNA repair protein
LMM7_0005 recF; DNA replication and repair protein
LMM7_1904 recG; ATP-dependent DNA helicase
LMM7_1545 recO; recombinational DNA repair protein
LMM7_2813 recR; recombinational DNA repair protein
LMM7_1453 recN; ATPase involved in DNA repair
LMM7_1984 recU; putative DNA repair/recombination protein
LMM7_2368 addA; putative ATP-dependent nuclease, subunit A
LMM7_2369 addB; putative ATP-dependent nuclease, subunit B (RecBCD)
LMM7_0007 gyrA; DNA gyrase subunit A
LMM7_0006 gyrB; DNA gyrase subunit B
LMM7_1356 topA; DNA topoisomerase I
LMM7_2027 hupB; putative non-specific DNA-binding protein HU
LMM7_2692 recombinase, phage RecT family protein
LMM7_2035 recQ; ATP-dependent DNA helicase
LMM7_2874 recQ; putative ATP-dependent DNA helicase
LMM7_2062 dinB; DNA polymerase IV
LMM7_2786 putative UV-damage repair protein
LMM7_1387 lexA; putative SOS response regulator
LMM7_1782 recX; recombination regulator, RecA repressor
LMM7_1234 DNA polymerase X family protein
LMM7_1992 dinG; bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
LMM7_2257 nrdE; ribonucleoside reductase, alpha subunit
LMM7_2256 nrdF; ribonucleoside reductase, beta subunit
LMM7_1662 predicted phosphoesterase DHH subfamily 1 protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:lmq03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Listeria monocytogenes M7 (serotype 4a)