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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:lrm03030]
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03410 Base excision repair [PATH:lrm03410]
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03420 Nucleotide excision repair [PATH:lrm03420]
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03430 Mismatch repair [PATH:lrm03430]
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03440 Homologous recombination [PATH:lrm03440]
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 LRC_00090 ssb; single stranded binding protein
LRC_00050 recF; DNA replication and repair protein
LRC_11480 recO; DNA repair protein
LRC_05860 recR; Recombination protein RecR
LRC_07870 recA; Recombinase A
LRC_10890 polA; DNA polymerase I
LRC_14230 ruvA; Holliday junction DNA helicase RuvA
LRC_14220 ruvB; Holliday junction DNA helicase
LRC_12100 ATP-dependent DNA helicase
LRC_03150 Hypothetical deoxyribonuclease
LRC_12750 exodeoxyribonuclease V alpha chain
LRC_10350 polC; DNA polymerase III alpha subunit
LRC_10110 polC; DNA polymerase III PolC
LRC_00020 dnaN; DNA polymerase III subunit beta
LRC_05840 dnaX; DNA polymerase III subunit gamma/tau
LRC_12550 holA; DNA polymerase III subunit delta
LRC_05900 rpoE; DNA polymerase III subunit delta
LRC_06570 dnaQ; DNA-directed DNA polymerase III, epsilon chain
LRC_12220 priA; primosomal protein n'
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K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:lrm03000]
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03021 Transcription machinery [BR:lrm03021]
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03019 Messenger RNA biogenesis [BR:lrm03019]
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03041 Spliceosome
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03011 Ribosome [BR:lrm03011]
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03009 Ribosome biogenesis [BR:lrm03009]
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03016 Transfer RNA biogenesis [BR:lrm03016]
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03012 Translation factors [BR:lrm03012]
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03110 Chaperones and folding catalysts [BR:lrm03110]
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04131 Membrane trafficking [BR:lrm04131]
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04121 Ubiquitin system
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03051 Proteasome
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03032 DNA replication proteins [BR:lrm03032]
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03036 Chromosome and associated proteins [BR:lrm03036]
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03400 DNA repair and recombination proteins [BR:lrm03400]
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LRC_06540 ung; Uracil-DNA glycosylase
LRC_09100 endonuclease III / DNA lyase
LRC_03240 Superfamily II DNA and RNA helicase
LRC_05650 NUDIX hydrolase
LRC_09470 pyrophosphohydrolase, NUDIX family
LRC_00680 Hydrolase, NUDIX family
LRC_03960 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase
LRC_13320 DNA-3-methyladenine glycosylase
LRC_10880 mutM; Formamidopyrimidine-DNA glycosylase
LRC_06580 xthA; Exodeoxyribonuclease III
LRC_11570 AP endonuclease
LRC_05030 lig; NAD-dependent DNA ligase
LRC_10890 polA; DNA polymerase I
LRC_06270 uvrA; excinuclease ABC subunit A
LRC_06260 uvrB; Excinuclease ABC subunit B
LRC_10640 uvrC; Excinuclease ABC subunit C
LRC_05020 pcrA; ATP-dependent DNA helicase
LRC_18280 ATP-dependent DNA helicase
LRC_04260 ATP-dependent DNA helicase
LRC_02590 rpoB; DNA-directed RNA polymerase subunit beta
LRC_02600 rpoB; DNA-directed RNA polymerase subunit beta
LRC_03010 rpoA; DNA-directed RNA polymerase subunit alpha
LRC_04780 rpoE; DNA-directed RNA polymerase subunit delta
LRC_12240 DNA-directed RNA polymerase, omega subunit
LRC_03480 mfd; Transcription-repair coupling factor
LRC_14250 mutS; DNA mismatch repair protein MutS
LRC_13940 DNA mismatch repair protein
LRC_14240 mutL; DNA mismatch repair protein
LRC_08320 exodeoxyribonuclease VII large subunit
LRC_08330 exodeoxyribonuclease VII small subunit
LRC_10350 polC; DNA polymerase III alpha subunit
LRC_10110 polC; DNA polymerase III PolC
LRC_00020 dnaN; DNA polymerase III subunit beta
LRC_12550 holA; DNA polymerase III subunit delta
LRC_05900 rpoE; DNA polymerase III subunit delta
LRC_06570 dnaQ; DNA-directed DNA polymerase III, epsilon chain
LRC_05840 dnaX; DNA polymerase III subunit gamma/tau
LRC_00090 ssb; single stranded binding protein
LRC_03150 Hypothetical deoxyribonuclease
LRC_12750 exodeoxyribonuclease V alpha chain
LRC_07870 recA; Recombinase A
LRC_14230 ruvA; Holliday junction DNA helicase RuvA
LRC_14220 ruvB; Holliday junction DNA helicase
LRC_12220 priA; primosomal protein n'
LRC_04160 sbcC; Exonuclease SbcCD, C subunit
LRC_04150 sbcD; Nuclease SbcCD, D subunit
LRC_03970 radA; DNA repair protein RadA
LRC_00050 recF; DNA replication and repair protein
LRC_12100 ATP-dependent DNA helicase
LRC_11480 recO; DNA repair protein
LRC_05860 recR; Recombination protein RecR
LRC_08370 DNA repair protein RecN
LRC_09120 recombination protein RecU
LRC_16580 ATP-dependent nuclease subunit A
LRC_16590 ATP-dependent nuclease, subunit B
LRC_10190 cas1; CRISPR-associated protein cas1
LRC_09930 cas1; CRISPR-associated endonuclease Cas1, NMENI subtype
LRC_00070 gyrA; DNA gyrase subunit A
LRC_00060 gyrB; DNA gyrase subunit B
LRC_09650 topA-2; DNA topoisomerase I
LRC_11830 DNA-binding protein
LRC_11880 ATP-dependent DNA helicase
LRC_14030 dinP; DNA polymerase IV
LRC_08380 Transcriptional repressor LexA
LRC_06830 recX; Recombination regulator RecX
LRC_09050 ATP-dependent helicase, DinG family
LRC_15430 nrdA; Ribonucleotide-diphosphate reductase subunit alpha
LRC_15420 nrdF; Ribonucleotide-diphosphate reductase subunit beta
LRC_14020 Phosphoesterase, DHH family protein
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K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:lrm03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Ligilactobacillus ruminis