| |
KO |
 09100 Metabolism
|
|
|
 09120 Genetic Information Processing
|
|
|
09121 Transcription
|
|
|
09122 Translation
|
|
|
09123 Folding, sorting and degradation
|
|
|
09124 Replication and repair
|
03030 DNA replication [PATH:lsl03030]
|
03410 Base excision repair [PATH:lsl03410]
|
03420 Nucleotide excision repair [PATH:lsl03420]
|
03430 Mismatch repair [PATH:lsl03430]
|
03440 Homologous recombination [PATH:lsl03440]
|
 LSL_1091 recJ; Single-stranded-DNA-specific exonuclease
LSL_0008 ssb; Single-strand DNA binding protein
LSL_0004 recF; DNA replication and repair protein
LSL_0894 recO; DNA repair protein
LSL_1226 recR; Recombination protein
LSL_1130 recA; Recombinase A
LSL_0488 polA; DNA polymerase I
LSL_1126 ruvA; Holliday junction DNA helicase
LSL_1125 ruvB; Holliday junction DNA helicase
LSL_0622 recG; ATP-dependent DNA helicase
LSL_0728 recD; Exodeoxyribonuclease V alpha chain
LSL_0865 dnaE; DNA polymerase III alpha subunit
LSL_0567 dnaE; DNA polymerase III alpha subunit
LSL_0002 dnaN; DNA polymerase III, beta chain
LSL_1228 dnaX; DNA polymerase III subunit gamma/tau
LSL_0681 holA; DNA polymerase III, delta subunit
LSL_1223 holB; DNA polymerase III, delta' subunit
LSL_1149 dnaQ; DNA-directed DNA polymerase III, epsilon chain
LSL_0613b Primosomal protein n-prim
|
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
|
03450 Non-homologous end-joining
|
03460 Fanconi anemia pathway
|
|
|
09126 Chromosome
|
|
|
09125 Information processing in viruses
|
|
|
09130 Environmental Information Processing
|
|
|
09140 Cellular Processes
|
|
|
09150 Organismal Systems
|
|
|
09160 Human Diseases
|
|
|
09180 Brite Hierarchies
|
|
|
09181 Protein families: metabolism
|
|
|
09182 Protein families: genetic information processing
|
03000 Transcription factors [BR:lsl03000]
|
03021 Transcription machinery [BR:lsl03021]
|
03019 Messenger RNA biogenesis [BR:lsl03019]
|
03041 Spliceosome
|
03011 Ribosome [BR:lsl03011]
|
03009 Ribosome biogenesis [BR:lsl03009]
|
03016 Transfer RNA biogenesis [BR:lsl03016]
|
03012 Translation factors [BR:lsl03012]
|
03110 Chaperones and folding catalysts [BR:lsl03110]
|
04131 Membrane trafficking [BR:lsl04131]
|
04121 Ubiquitin system
|
03051 Proteasome
|
03032 DNA replication proteins [BR:lsl03032]
|
03036 Chromosome and associated proteins [BR:lsl03036]
|
03400 DNA repair and recombination proteins [BR:lsl03400]
|
LSL_0559 ada; O6-methylguanine-DNA methyltransferase
LSL_1152 ung; Uracil-DNA glycosylase
LSL_0691 nth; Endonuclease III
LSL_0349 srmB; Superfamily II DNA and RNA helicase
LSL_1014 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase
LSL_1988 phosphohydrolase(MutT/nudix family protein)
LSL_1251 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase
LSL_1082 DNA-3-methyladenine glycosylase
LSL_0489 nei; Formamidopyrimidine-DNA glycosylase
LSL_1490 xthA; Exodeoxyribonuclease III
LSL_1091 recJ; Single-stranded-DNA-specific exonuclease
LSL_1348 lig; NAD-dependent DNA ligase
LSL_0488 polA; DNA polymerase I
LSL_1174 uvrA; Excinuclease ABC subunit A
LSL_1175 uvrB; Excinuclease ABC subunit B
LSL_1098 uvrC; Excinuclease ABC subunit C
LSL_1349 pcrA; ATP-dependent DNA helicase
LSL_1377 rep; ATP-dependent DNA helicase
LSL_1564 DNA helicase
LSL_0197 rpoB; DNA-directed RNA polymerase beta chain
LSL_0198 rpoC; DNA-directed RNA polymerase beta' chain
LSL_1409 rpoA; DNA-directed RNA polymerase alpha chain
LSL_0341 rpoE; DNA-directed RNA polymerase delta chain
LSL_0612 DNA-directed RNA polymerase omega chain
LSL_1360 mfd; Transcription-repair coupling factor
LSL_1128 mutS; DNA mismatch repair protein
LSL_1105 mutS; DNA mismatch repair protein
LSL_1127 mutL; DNA mismatch repair protein
LSL_0534 xseA; Exodeoxyribonuclease VII large subunit
LSL_0535 xseB; Exodeoxyribonuclease VII small subunit
LSL_0865 dnaE; DNA polymerase III alpha subunit
LSL_0567 dnaE; DNA polymerase III alpha subunit
LSL_0002 dnaN; DNA polymerase III, beta chain
LSL_0681 holA; DNA polymerase III, delta subunit
LSL_1223 holB; DNA polymerase III, delta' subunit
LSL_1149 dnaQ; DNA-directed DNA polymerase III, epsilon chain
LSL_1228 dnaX; DNA polymerase III subunit gamma/tau
LSL_0008 ssb; Single-strand DNA binding protein
LSL_0728 recD; Exodeoxyribonuclease V alpha chain
LSL_1130 recA; Recombinase A
LSL_1126 ruvA; Holliday junction DNA helicase
LSL_1125 ruvB; Holliday junction DNA helicase
LSL_0613b Primosomal protein n-prim
LSL_1369 sbcC; Exonuclease
LSL_1370 sbcD; Exonuclease
LSL_1250 radA; DNA repair protein
LSL_0004 recF; DNA replication and repair protein
LSL_0622 recG; ATP-dependent DNA helicase
LSL_0894 recO; DNA repair protein
LSL_1226 recR; Recombination protein
LSL_0539 recN; DNA repair protein
LSL_0932 recU; Recombination protein
LSL_1607 ATP-dependent nuclease subunit A
LSL_1608 ATP-dependent nuclease subunit B
LSL_0098 cas1; CRISPR-associated protein
LSL_0006 gyrA; DNA gyrase subunit A
LSL_0005 gyrB; DNA gyrase subunit B
LSL_0720 topA; DNA topoisomerase I
LSL_0885 DNA-binding protein HU
LSL_1774 himA; DNA-binding protein HU
LSL_0902 recQ; ATP-dependent DNA helicase
LSL_1162 dinP; DNA polymerase IV
LSL_0540 lexA; LexA repressor
LSL_0242 cI-like repressor, phage associated
LSL_0368 Regulatory protein recX
LSL_0686 dinG; ATP-dependent helicase, DinG family
LSL_1232 nrdA; Ribonucleoside-diphosphate reductase alpha chain
LSL_1233 nrdB; Ribonucleoside-diphosphate reductase beta chain
LSL_1113 Phosphoesterase, DHH family protein
|
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
|
03029 Mitochondrial biogenesis [BR:lsl03029]
|
|
|
09183 Protein families: signaling and cellular processes
|
|
|
09185 Viral protein families
|
|
|
09184 RNA family
|
|
|
09190 Not Included in Pathway or Brite
|
KEGG Orthology (KO) - Ligilactobacillus salivarius UCC118