KEGG Orthology (KO) - Lysinibacillus sphaericus

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:lsp03030]
     03410 Base excision repair [PATH:lsp03410]
       Bsph_2077 Probable endonuclease III
       Bsph_0938 Uracil-DNA glycosylase
       Bsph_0312 A/G-specific adenine DNA glycosylase
       Bsph_4110 Formamidopyrimidine-DNA glycosylase
       Bsph_2933 DNA-3-methyladenine glycosylase
       Bsph_2480 DNA-3-methyladenine glycosylase 1
       Bsph_4336 Exodeoxyribonuclease
       Bsph_3676 Probable endonuclease 4
       Bsph_4111 DNA polymerase I
       Bsph_3914 Single-stranded-DNA-specific exonuclease recJ
       Bsph_0226 DNA ligase
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
     03420 Nucleotide excision repair [PATH:lsp03420]
     03430 Mismatch repair [PATH:lsp03430]
     03440 Homologous recombination [PATH:lsp03440]
     03450 Non-homologous end-joining [PATH:lsp03450]
     03460 Fanconi anemia pathway
 
   09126 Chromosome
 
   09125 Information processing in viruses
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:lsp03000]
     03021 Transcription machinery [BR:lsp03021]
     03019 Messenger RNA biogenesis [BR:lsp03019]
     03041 Spliceosome
     03011 Ribosome [BR:lsp03011]
     03009 Ribosome biogenesis [BR:lsp03009]
     03016 Transfer RNA biogenesis [BR:lsp03016]
     03012 Translation factors [BR:lsp03012]
     03110 Chaperones and folding catalysts [BR:lsp03110]
     04131 Membrane trafficking [BR:lsp04131]
     04121 Ubiquitin system [BR:lsp04121]
     03051 Proteasome
     03032 DNA replication proteins [BR:lsp03032]
     03036 Chromosome and associated proteins [BR:lsp03036]
     03400 DNA repair and recombination proteins [BR:lsp03400]
       Bsph_2002 Methylated-DNA--protein-cysteine methyltransferase
       Bsph_0938 Uracil-DNA glycosylase
       Bsph_0312 A/G-specific adenine DNA glycosylase
       Bsph_2077 Probable endonuclease III
       Bsph_1762 MutT/NUDIX family hydrolase
       Bsph_4075 mutT; mutator mutT protein
       Bsph_0447 NTP pyrophosphohydrolase including oxidative damage repair enzymes
       Bsph_2613 MutT/NUDIX family protein
       Bsph_4255 Nucleoside triphosphatase ytkD
       Bsph_2754 conserved hypothetical protein
       Bsph_0721 MutT/NUDIX family protein
       Bsph_2426 MutT/NUDIX family protein
       Bsph_1845 Deoxyuridine 5'-triphosphate nucleotidohydrolase
       Bsph_2931 adaA; methylphosphotriester-DNA alkyltransferase / transcriptional regulator (AraC family)
       Bsph_1999 adaA; methylphosphotriester-DNA alkyltransferase
       Bsph_2930 Methylated-DNA--protein-cysteine methyltransferase
       Bsph_0184 adaB; O6-methylguanine-DNA methyltransferase
       Bsph_2933 DNA-3-methyladenine glycosylase
       Bsph_2480 DNA-3-methyladenine glycosylase 1
       Bsph_4110 Formamidopyrimidine-DNA glycosylase
       Bsph_4336 Exodeoxyribonuclease
       Bsph_3676 Probable endonuclease 4
       Bsph_3914 Single-stranded-DNA-specific exonuclease recJ
       Bsph_0226 DNA ligase
       Bsph_4111 DNA polymerase I
       Bsph_1183 UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)
       Bsph_1182 UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
       Bsph_4057 UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
       Bsph_0225 ATP-dependent DNA helicase pcrA
       Bsph_4683 yvgS; YvgS
       Bsph_0869 superfamily I DNA helicase
       Bsph_4630 DNA-directed RNA polymerase beta chain
       Bsph_4629 DNA-directed RNA polymerase beta' chain
       Bsph_4589 DNA-directed RNA polymerase alpha chain
       Bsph_0978 DNA-directed RNA polymerase delta subunit (RNAP delta factor)
       Bsph_1485 conserved hypothetical protein
       Bsph_0075 Transcription-repair coupling factor
       Bsph_1655 mutS; DNA mismatch repair protein
       Bsph_4066 MutS2 protein
       Bsph_2253 DNA mismatch repair protein
       Bsph_1656 mutL; DNA mismatch repair protein
       Bsph_3512 Exodeoxyribonuclease 7 large subunit
       Bsph_3511 conserved hypothetical protein
       Bsph_4134 DNA polymerase III subunit alpha
       Bsph_1593 DNA polymerase III polC-type
       Bsph_0005 dnaN; DnaN
       Bsph_p018 DNA polymerase III subunit beta
       Bsph_p046 hypothetical protein
       Bsph_3840 Hypothetical yqeN protein
       Bsph_p126 Hypothetical yqeN protein
       Bsph_p045 DNA polymerase III subunit delta'
       Bsph_0051 DNA polymerase III subunit delta'
       Bsph_0038 DNA polymerase III subunit gamma/tau
       Bsph_p044 DNA polymerase III subunit gamma/tau
       Bsph_1031 Single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein)
       Bsph_4768 Single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein)
       Bsph_p016 single-strand DNA-binding protein
       Bsph_p017 Single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein)
       Bsph_0494 Modification methylase DpnIIA
       Bsph_p104 DNA-methyltransferase
       Bsph_3876 exodeoxyribonuclease V-like protein
       Bsph_1629 Protein recA (Recombinase A)
       Bsph_3938 Holliday junction ATP-dependent DNA helicase ruvA
       Bsph_1487 Primosomal protein N'
       Bsph_0282 Nuclease sbcCD subunit C
       Bsph_0281 Exonuclease sbcD-like protein
       Bsph_4648 radA; DNA repair protein radA-like protein (DNA repair protein sms-like protein)
       Bsph_0007 recF; RecF
       Bsph_1514 ATP-dependent DNA helicase recG
       Bsph_3709 recO; DNA repair protein recO (Recombination protein O)
       Bsph_0040 recR; Recombination protein RecR
       Bsph_3506 recN; DNA repair protein recN (Recombination protein N)
       Bsph_2080 Recombination protein U (Penicillin-binding protein-related factor A) (PBP-related factor A)
       Bsph_1199 ATP-dependent nuclease subunit A
       Bsph_1198 ATP-dependent nuclease subunit B
       Bsph_3076 conserved hypothetical protein
       Bsph_3075 Putative DNA ligase-like protein
       Bsph_p130 Putative DNA ligase-like protein
       Bsph_0009 DNA gyrase subunit A
       Bsph_0008 DNA gyrase subunit B
       Bsph_1929 DNA-binding protein HU (DNA-binding protein II) (HB)
       Bsph_1906 ATP-dependent DNA helicase recQ
       Bsph_2840 ATP-dependent DNA helicase recQ
       Bsph_3460 DNA polymerase IV 1
       Bsph_3204 DNA polymerase IV 2
       Bsph_1684 LexA repressor
       Bsph_0308 recX; Regulatory protein
       Bsph_4067 hypothetical DNA polymerase / putative histidinol phosphatase
       Bsph_1991 Probable ATP-dependent helicase dinG
       Bsph_2093 ATP-dependent helicase
       Bsph_3555 Vitamin B12-dependent ribonucleotide reductase
       Bsph_1843 Ribonucleoside-diphosphate reductase alpha subunit
       Bsph_1844 Ribonucleoside-diphosphate reductase subunit beta
       Bsph_4135 conserved hypothetical protein
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
     03029 Mitochondrial biogenesis [BR:lsp03029]
 
   09183 Protein families: signaling and cellular processes
 
   09185 Viral protein families
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

[ KO | BRITE | KEGG2 | KEGG ]
Last updated: March 27, 2024