| |
KO |
 09100 Metabolism
|
|
|
 09120 Genetic Information Processing
|
|
|
09121 Transcription
|
|
|
09122 Translation
|
|
|
09123 Folding, sorting and degradation
|
|
|
09124 Replication and repair
|
03030 DNA replication [PATH:mid03030]
|
03410 Base excision repair [PATH:mid03410]
|
03420 Nucleotide excision repair [PATH:mid03420]
|
03430 Mismatch repair [PATH:mid03430]
|
03440 Homologous recombination [PATH:mid03440]
|
 MIP_00099 Single-stranded DNA-binding protein
MIP_02475 Single-stranded DNA-binding protein
MIP_00003 DNA replication and repair protein recF
MIP_02837 DNA repair protein recO
MIP_00712 Recombination protein recR
MIP_05199 Protein RecA
MIP_04428 DNA polymerase I
MIP_04982 Holliday junction ATP-dependent DNA helicase ruvA
MIP_04981 Holliday junction ATP-dependent DNA helicase ruvB
MIP_04983 Crossover junction endo deoxyribonuclease ruvC
MIP_05499 ATP-dependent DNA helicase recG
MIP_06734 Exo deoxyribonuclease V beta chain
MIP_06731 Exo deoxyribonuclease V gamma chain
MIP_06736 Exo deoxyribonuclease V alpha chain
MIP_04535 DNA polymerase III subunit alpha
MIP_00002 DNA polymerase III subunit beta
MIP_00703 DNA polymerase III subunits gamma and tau
MIP_02583 DNA polymerase III, delta subunit
MIP_00839 DNA polymerase III subunit delta'
MIP_00718 DnaQ
MIP_03183 Hypothetical protein
MIP_04834 Putative primosomal protein N'
|
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
|
03450 Non-homologous end-joining [PATH:mid03450]
|
03460 Fanconi anemia pathway
|
|
|
09126 Chromosome
|
|
|
09125 Information processing in viruses
|
|
|
09130 Environmental Information Processing
|
|
|
09140 Cellular Processes
|
|
|
09150 Organismal Systems
|
|
|
09160 Human Diseases
|
|
|
09180 Brite Hierarchies
|
|
|
09181 Protein families: metabolism
|
|
|
09182 Protein families: genetic information processing
|
03000 Transcription factors [BR:mid03000]
|
03021 Transcription machinery [BR:mid03021]
|
03019 Messenger RNA biogenesis [BR:mid03019]
|
03041 Spliceosome
|
03011 Ribosome [BR:mid03011]
|
03009 Ribosome biogenesis [BR:mid03009]
|
03016 Transfer RNA biogenesis [BR:mid03016]
|
03012 Translation factors [BR:mid03012]
|
03110 Chaperones and folding catalysts [BR:mid03110]
|
04131 Membrane trafficking [BR:mid04131]
|
04121 Ubiquitin system [BR:mid04121]
|
03051 Proteasome [BR:mid03051]
|
03032 DNA replication proteins [BR:mid03032]
|
03036 Chromosome and associated proteins [BR:mid03036]
|
03400 DNA repair and recombination proteins [BR:mid03400]
|
MIP_02207 Methylated-DNA--protein-cysteine methyl transferase
MIP_05642 Deoxyribo dipyrimidine photo-lyase
MIP_05514 Uracil-DNA glycosylase
MIP_04305 3-methyladenine DNA glycosylase
MIP_00902 Putative A/G-specific adenine glycosylase
MIP_00798 Endonuclease III
MIP_01448 DNA repair helicase RAD25
MIP_01935 MutT2
MIP_07056 Maf-like/Nudix hydrolase fusion protein
MIP_04483 Hydrolase, NUDIX family protein
MIP_05151 Deoxyuridine 5'-triphosphate nucleotide hydrolase
MIP_02098 Uracil-DNA glycosylase superfamily protein
MIP_05944 Uracil DNA glycosylase superfamily protein
MIP_02210 Diguanylate cyclase
MIP_02007 putative GMP synthase (glutamine-hydrolyzing)
MIP_05475 Formamido pyrimidine-DNA glycosylase
MIP_04417 Formamido pyrimidine-DNA glycosylase
MIP_01554 Formamido pyrimidine-DNA glycosylase
MIP_06230 Putative DNA glycosylase
MIP_02496 Putative DNA glycosylase
MIP_07011 Exo deoxyribonuclease III
MIP_06665 putative endonuclease 4
MIP_05585 NAD-dependent DNA ligase LigA
MIP_04428 DNA polymerase I
MIP_04385 UvrABC system protein A
MIP_02897 UvrABC system protein A
MIP_04397 UvrABC system protein B
MIP_04810 UvrABC system protein C
MIP_06035 putative DNA helicase II -like protein
MIP_06043 ATP-dependent DNA helicase pcrA
MIP_01560 ATP-dependent DNA helicase pcrA
MIP_06670 DNA-directed RNA polymerase subunit beta
MIP_06667 DNA-directed RNA polymerase subunit beta'
MIP_06441 DNA-directed RNA polymerase subunit alpha
MIP_04846 DNA-directed RNA polymerase subunit omega
MIP_01717 Transcription-repair-coupling factor
MIP_01827 Exo-deoxyribonuclease 7 large subunit
MIP_01826 Exo-deoxyribonuclease 7 small subunit
MIP_04535 DNA polymerase III subunit alpha
MIP_00002 DNA polymerase III subunit beta
MIP_02583 DNA polymerase III, delta subunit
MIP_00839 DNA polymerase III subunit delta'
MIP_00718 DnaQ
MIP_03183 Hypothetical protein
MIP_00703 DNA polymerase III subunits gamma and tau
MIP_00099 Single-stranded DNA-binding protein
MIP_02475 Single-stranded DNA-binding protein
MIP_06734 Exo deoxyribonuclease V beta chain
MIP_06731 Exo deoxyribonuclease V gamma chain
MIP_06736 Exo deoxyribonuclease V alpha chain
MIP_05199 Protein RecA
MIP_04982 Holliday junction ATP-dependent DNA helicase ruvA
MIP_04981 Holliday junction ATP-dependent DNA helicase ruvB
MIP_04983 Crossover junction endo deoxyribonuclease ruvC
MIP_04834 Putative primosomal protein N'
MIP_00907 DNA repair protein radA -like protein
MIP_00003 DNA replication and repair protein recF
MIP_05499 ATP-dependent DNA helicase recG
MIP_02837 DNA repair protein recO
MIP_00712 Recombination protein recR
MIP_04292 DNA repair protein recN
MIP_02440 ATP-binding protein
MIP_01541 Ku protein
MIP_01544 Putative DNA ligase-like protein
MIP_00008 DNA gyrase subunit A
MIP_00006 DNA gyrase subunit B
MIP_00835 DNA topoisomerase 1
MIP_05941 DNA topoisomerase 1B
MIP_05530 DNA-binding protein HU -like protein
MIP_00467 DNA polymerase IV 2
MIP_04549 DNA polymerase IV 1
MIP_05182 LexA repressor
MIP_06346 Hypothetical protein
MIP_06331 Error-prone DNA polymerase
MIP_05197 Regulatory protein recX
MIP_02225 putative ATP-dependent helicase dinG -like protein
MIP_06228 putative ATP-dependent helicase lhr
MIP_05529 MutT1
MIP_04286 ADP-ribose pyrophosphatase
MIP_02151 Nudix hydrolase
MIP_05677 Ribonucleotide-diphosphate reductase subunit alpha
MIP_05667 Ribonucleoside-diphosphate reductase subunit beta
MIP_07333 R2-like ligand binding oxidase
MIP_06953 Ribonucleoside-diphosphate reductase subunit beta
MIP_05298 DHH family protein
|
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
|
03029 Mitochondrial biogenesis [BR:mid03029]
|
|
|
09183 Protein families: signaling and cellular processes
|
|
|
09185 Viral protein families
|
|
|
09184 RNA family
|
|
|
09190 Not Included in Pathway or Brite
|
KEGG Orthology (KO) - Mycobacterium intracellulare subsp. intracellulare