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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:mmar03030]
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03410 Base excision repair [PATH:mmar03410]
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03420 Nucleotide excision repair [PATH:mmar03420]
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03430 Mismatch repair [PATH:mmar03430]
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03440 Homologous recombination [PATH:mmar03440]
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 MODMU_3193 ssb; Single-stranded DNA-binding protein ssb
MODMU_1533 ssb; Single-stranded DNA-binding protein
MODMU_5567 ssb; Single-stranded DNA-binding protein
MODMU_0005 recF; DNA replication and repair protein recF
MODMU_1776 recO; DNA repair protein recO
MODMU_0557 recR; Recombination protein recR
MODMU_4304 recA; Recombinase A (recA)
MODMU_3389 polA; DNA polymerase I
MODMU_3358 ruvA; Holliday junction ATP-dependent DNA helicase ruvA
MODMU_3357 ruvB; Holliday junction DNA helicase ruvB
MODMU_3359 ruvC; Crossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC)
MODMU_4444 recG; ATP-dependent DNA helicase recG
MODMU_2580 putative ATP-dependent exoDNAse (Exonuclease V), alpha subunit/helicase superfamily I member
MODMU_0794 trwC; conjugative relaxase TrwC
MODMU_3436 dnaE; DNA polymerase III subunit alpha
MODMU_0003 dnaN; DNA polymerase III subunit beta
MODMU_0553 dnaX; DNA polymerase III, subunits gamma and tau
MODMU_1740 DNA polymerase III, delta subunit
MODMU_0689 dnaX; DNA polymerase III, delta prime subunit
MODMU_3525 polC; DNA-directed DNA polymerase
MODMU_4109 Putative exonuclease, RNase T and DNA polymerase III
MODMU_3310 priA; putative primosomal protein N'
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K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:mmar03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:mmar03000]
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03021 Transcription machinery [BR:mmar03021]
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03019 Messenger RNA biogenesis [BR:mmar03019]
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03041 Spliceosome
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03011 Ribosome [BR:mmar03011]
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03009 Ribosome biogenesis [BR:mmar03009]
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03016 Transfer RNA biogenesis [BR:mmar03016]
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03012 Translation factors [BR:mmar03012]
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03110 Chaperones and folding catalysts [BR:mmar03110]
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04131 Membrane trafficking [BR:mmar04131]
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04121 Ubiquitin system [BR:mmar04121]
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03051 Proteasome [BR:mmar03051]
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03032 DNA replication proteins [BR:mmar03032]
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03036 Chromosome and associated proteins [BR:mmar03036]
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03400 DNA repair and recombination proteins [BR:mmar03400]
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MODMU_1066 Methylated-DNA/protein-cysteine methyltransferase
MODMU_0893 phr; Deoxyribodipyrimidine photo-lyase
MODMU_3209 putative 3-methyladenine DNA glycosylase
MODMU_0751 mutY; A/G-specific DNA-adenine glycosylase
MODMU_0601 nth; Endonuclease III
MODMU_0827 Putative DNA helicase, superfamily II
MODMU_1125 NUDIX hydrolase
MODMU_0383 ADP-ribose pyrophosphatase
MODMU_4118 NUDIX hydrolase (modular protein)
MODMU_4667 nudF; ADP-ribose pyrophosphatase
MODMU_2796 putative mutT-NUDIX hydrolase
MODMU_2805 putative RNA pyrophosphohydrolase
MODMU_3926 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
MODMU_0756 Deoxyribodipyrimidine photolyase-related protein
MODMU_2251 G/U mismatch-specific DNA glycosylase (modular protein)
MODMU_0883 Uracil-DNA glycosylase
MODMU_4869 Uracil-DNA glycosylase
MODMU_0980 putative uracil-DNA glycosylase
MODMU_0405 3-methyladenine DNA glycosylase
MODMU_1067 ada; Transcriptional regulator, Ada family
MODMU_1161 tag; 3-methyl-adenine DNA glycosylase I, constitutive
MODMU_0220 mutM; DNA-(Apurinic or apyrimidinic site) lyase; Formamidopyrimidine-DNA glycosylase
MODMU_4437 mutM; Formamidopyrimidine-DNA glycosylase
MODMU_0892 DNA glycosylase
MODMU_4318 DNA glycosylase
MODMU_4319 DNA glycosylase
MODMU_5494 xthA; Exodeoxyribonuclease III
MODMU_3506 nfo; endonuclease IV with intrinsic 3'-5' exonuclease activity
MODMU_5569 nfo; Endonuclease 4
MODMU_4493 ligA; DNA ligase
MODMU_3389 polA; DNA polymerase I
MODMU_3639 uvrA; UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)(Excinuclease ATPase subunit)
MODMU_3658 uvrB; UvrABC system protein B
MODMU_3633 uvrC; Excinuclease, UvrABC system protein C
MODMU_1994 Excinuclease ABC C subunit domain protein
MODMU_4841 pcrA; ATP-dependent DNA helicase pcrA
MODMU_4630 uvrD; DNA/RNA helicase, superfamily I
MODMU_4642 uvrD; DNA/RNA helicase, superfamily I
MODMU_4930 rpoB; DNA-directed RNA polymerase subunit beta
MODMU_4929 rpoC; DNA-directed RNA polymerase subunit beta'
MODMU_4891 rpoA; DNA-directed RNA polymerase alpha chain
MODMU_3313 rpoZ; DNA-directed RNA polymerase subunit omega
MODMU_0971 mfd; Transcription-repair-coupling factor
MODMU_1059 xseA; Exodeoxyribonuclease 7 large subunit
MODMU_1058 Exodeoxyribonuclease VII small subunit
MODMU_3436 dnaE; DNA polymerase III subunit alpha
MODMU_0003 dnaN; DNA polymerase III subunit beta
MODMU_1740 DNA polymerase III, delta subunit
MODMU_0689 dnaX; DNA polymerase III, delta prime subunit
MODMU_3525 polC; DNA-directed DNA polymerase
MODMU_4109 Putative exonuclease, RNase T and DNA polymerase III
MODMU_0553 dnaX; DNA polymerase III, subunits gamma and tau
MODMU_3193 ssb; Single-stranded DNA-binding protein ssb
MODMU_1533 ssb; Single-stranded DNA-binding protein
MODMU_5567 ssb; Single-stranded DNA-binding protein
MODMU_4003 vsr; DNA mismatch endonuclease vsr
MODMU_4137 vsr; DNA mismatch endonuclease Vsr
MODMU_2580 putative ATP-dependent exoDNAse (Exonuclease V), alpha subunit/helicase superfamily I member
MODMU_0794 trwC; conjugative relaxase TrwC
MODMU_4304 recA; Recombinase A (recA)
MODMU_3358 ruvA; Holliday junction ATP-dependent DNA helicase ruvA
MODMU_3357 ruvB; Holliday junction DNA helicase ruvB
MODMU_3359 ruvC; Crossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC)
MODMU_3310 priA; putative primosomal protein N'
MODMU_4746 putative ATP-dependent dsDNA exonuclease (fragment)
MODMU_4748 sbcD; Exonuclease I SbcCD, subunit D
MODMU_0754 radA; DNA repair protein radA homolog
MODMU_0005 recF; DNA replication and repair protein recF
MODMU_4444 recG; ATP-dependent DNA helicase recG
MODMU_1776 recO; DNA repair protein recO
MODMU_0557 recR; Recombination protein recR
MODMU_3185 recN; DNA repair protein recN
MODMU_0720 Putative ATPase
MODMU_2074 DNA end-binding protein Ku
MODMU_2075 DNA polymerase LigD, ligase domain protein
MODMU_2076 DNA polymerase LigD, polymerase domain
MODMU_1396 DNA primase, small subunit
MODMU_0011 gyrA; DNA gyrase subunit A
MODMU_0010 gyrB; DNA gyrase subunit B
MODMU_0684 topA; DNA topoisomerase 1
MODMU_2070 Topoisomerase IB
MODMU_0314 hup; Bacterial nucleoid DNA-binding HU protein
MODMU_0181 recQ; ATP-dependent DNA helicase RecQ
MODMU_1753 recQ; ATP-dependent DNA helicase RecQ
MODMU_5459 recQ; ATP-dependent DNA helicase, RecQ family
MODMU_3469 dinB; DNA polymerase IV
MODMU_5558 dinB; DNA polymerase IV
MODMU_4285 lexA; LexA repressor
MODMU_3479 DNA polymerase III, alpha subunit
MODMU_4303 Regulatory protein recX (modular protein)
MODMU_4316 putative ATP-dependent helicase lhr
MODMU_4460 NUDIX hydrolase
MODMU_3171 nudF; ADP-ribose pyrophosphatase
MODMU_0123 NUDIX hydrolase
MODMU_4282 nrdJ; Vitamin B12-dependent ribonucleotide reductase
MODMU_4373 Phosphoesterase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:mmar03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Modestobacter marinus