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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:net03030]
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03410 Base excision repair [PATH:net03410]
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03420 Nucleotide excision repair [PATH:net03420]
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03430 Mismatch repair [PATH:net03430]
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03440 Homologous recombination [PATH:net03440]
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 Neut_0131 exonuclease RecJ
Neut_0117 single-strand binding protein/Primosomal replication protein n
Neut_2461 single-strand binding protein
Neut_0789 RecA protein
Neut_0778 DNA polymerase I
Neut_0283 Holliday junction DNA helicase subunit RuvA
Neut_0284 Holliday junction DNA helicase RuvB
Neut_0282 crossover junction endodeoxyribonuclease RuvC
Neut_1558 ATP-dependent DNA helicase RecG
Neut_1356 DNA helicase/exodeoxyribonuclease V, beta subunit
Neut_1355 DNA helicase/exodeoxyribonuclease V, gamma subunit
Neut_1357 DNA helicase/exodeoxyribonuclease V, alpha subunit
Neut_0384 DNA polymerase III, alpha subunit
Neut_0002 DNA polymerase III, beta subunit
Neut_0590 DNA polymerase III, subunits gamma and tau
Neut_1427 DNA polymerase III, delta subunit
Neut_0543 DNA polymerase III, delta prime subunit
Neut_2175 DNA polymerase III, epsilon subunit
Neut_0600 DNA polymerase III, chi subunit
Neut_1682 replication restart DNA helicase PriA
Neut_2381 restart primosome assembly protein PriB
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:net03000]
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03021 Transcription machinery [BR:net03021]
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03019 Messenger RNA biogenesis [BR:net03019]
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03041 Spliceosome
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03011 Ribosome [BR:net03011]
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03009 Ribosome biogenesis [BR:net03009]
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03016 Transfer RNA biogenesis [BR:net03016]
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03012 Translation factors [BR:net03012]
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03110 Chaperones and folding catalysts [BR:net03110]
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04131 Membrane trafficking [BR:net04131]
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04121 Ubiquitin system [BR:net04121]
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03051 Proteasome [BR:net03051]
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03032 DNA replication proteins [BR:net03032]
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03036 Chromosome and associated proteins [BR:net03036]
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03400 DNA repair and recombination proteins [BR:net03400]
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Neut_1220 methylated-DNA--protein-cysteine methyltransferase
Neut_0993 DNA-3-methyladenine glycosylase
Neut_2309 A/G-specific DNA-adenine glycosylase
Neut_0644 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
Neut_0653 thiamine monophosphate synthase
Neut_0784 deoxyuridine 5'-triphosphate nucleotidohydrolase
Neut_1346 Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase
Neut_1296 phage SPO1 DNA polymerase-related protein
Neut_1410 Uracil-DNA glycosylase superfamily
Neut_1221 DNA-O6-methylguanine--protein-cysteine S-methyltransferase
Neut_2512 Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
Neut_0211 Exodeoxyribonuclease III
Neut_0691 exodeoxyribonuclease III Xth
Neut_0131 exonuclease RecJ
Neut_0946 DNA ligase, NAD-dependent
Neut_0778 DNA polymerase I
Neut_2459 Excinuclease ABC subunit A
Neut_1082 Excinuclease ABC subunit B
Neut_1412 Excinuclease ABC subunit C
Neut_0773 ATP-dependent DNA helicase UvrD
Neut_2545 UvrD/REP helicase
Neut_2605 UvrD/REP helicase
Neut_1795 DNA-directed RNA polymerase subunit beta
Neut_1794 DNA-directed RNA polymerase subunit beta'
Neut_0583 DNA-directed RNA polymerase subunit alpha
Neut_0613 DNA-directed RNA polymerase subunit omega
Neut_0129 transcription-repair coupling factor
Neut_2022 DNA mismatch repair protein MutS
Neut_1339 DNA mismatch repair protein MutS domain protein
Neut_1828 DNA mismatch repair protein MutL
Neut_1887 Exodeoxyribonuclease I subunit C
Neut_1510 Exodeoxyribonuclease VII large subunit
Neut_1499 Exodeoxyribonuclease VII small subunit
Neut_0384 DNA polymerase III, alpha subunit
Neut_0002 DNA polymerase III, beta subunit
Neut_0600 DNA polymerase III, chi subunit
Neut_1427 DNA polymerase III, delta subunit
Neut_0543 DNA polymerase III, delta prime subunit
Neut_2175 DNA polymerase III, epsilon subunit
Neut_0590 DNA polymerase III, subunits gamma and tau
Neut_0117 single-strand binding protein/Primosomal replication protein n
Neut_2461 single-strand binding protein
Neut_1356 DNA helicase/exodeoxyribonuclease V, beta subunit
Neut_1355 DNA helicase/exodeoxyribonuclease V, gamma subunit
Neut_1357 DNA helicase/exodeoxyribonuclease V, alpha subunit
Neut_0789 RecA protein
Neut_0283 Holliday junction DNA helicase subunit RuvA
Neut_0284 Holliday junction DNA helicase RuvB
Neut_0282 crossover junction endodeoxyribonuclease RuvC
Neut_1682 replication restart DNA helicase PriA
Neut_2381 restart primosome assembly protein PriB
Neut_2425 SMC domain protein
Neut_2424 Exodeoxyribonuclease I subunit D
Neut_1754 DNA replication and repair protein RadA
Neut_1558 ATP-dependent DNA helicase RecG
Neut_0767 DNA replication and repair protein RecN
Neut_1228 putative exonuclease, RdgC
Neut_1013 CRISPR-associated protein, Cas1 family
Neut_2229 CRISPR-associated protein, Cas1 family
Neut_1941 protein of unknown function DUF853, NPT hydrolase putative
Neut_1573 DNA gyrase subunit A
Neut_0003 DNA gyrase subunit B
Neut_0661 histone family protein DNA-binding protein
Neut_1209 DNA-binding protein Fis
Neut_2325 integration host factor, alpha subunit
Neut_0401 integration host factor, beta subunit
Neut_2523 ATP-dependent DNA helicase RecQ
Neut_1983 histone family protein nucleoid-structuring protein H-NS
Neut_1620 DNA-directed DNA polymerase
Neut_2575 DNA-directed DNA polymerase
Neut_2622 DNA-directed DNA polymerase
Neut_2574 UmuD protein. Serine peptidase. MEROPS family S24
Neut_2624 putative prophage repressor
Neut_0790 regulatory protein RecX
Neut_1215 helicase c2
Neut_2467 ribonucleoside-diphosphate reductase, alpha subunit
Neut_2468 Ribonucleoside-diphosphate reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:net03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Nitrosomonas eutropha