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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:neu03030]
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 NE0141 dnaQ; probable DNA polymerase III (epsilon chain) protein
NE1978 dnaE1; dnaE1; DNA polymerase III (alpha chain) protein
NE0433 dnaX; dnaX; DNA polymerase III (subunits tau and gamma) protein
NE2180 holB; putative DNA polymerase III (delta' subunit) protein
NE1137 holA; putative DNA polymerase III (delta subunit) protein
NE0442 holC; putative DNA polymerase III (chi subunit) protein
NE0002 dnaN; DNA polymerase III, beta chain
NE0194 dnaB; dnaB; replicative DNA helicase protein
NE0228 CHC2 zinc finger
NE2453 ssb; Single-strand binding protein family
NE0140 rnhA; probable ribonuclease hi protein
NE1707 rnhB; Ribonuclease HII and HIII
NE1468 polA; polA; DNA polymerase I protein
NE1753 lig; NAD-dependent DNA ligase
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K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03410 Base excision repair [PATH:neu03410]
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03420 Nucleotide excision repair [PATH:neu03420]
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03430 Mismatch repair [PATH:neu03430]
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NE1705 mutS; mutS; DNA mismatch repair protein
NE0830 DNA mismatch repair protein MutS family, C-terminal domain
NE1742 mutL; mutL; DNA mismatch repair protein
NE1473 uvrD; UvrD/REP helicase
NE0671 sbcB; exodeoxyribonuclease I
NE1172 xseA; xseA; exodeoxyribonuclease vII large subunit protein
NE1159 xseB; Exonuclease VII, small subunit
NE0010 recJ; recJ: single-stranded-DNA-specific exonuclease
NE2453 ssb; Single-strand binding protein family
NE1978 dnaE1; dnaE1; DNA polymerase III (alpha chain) protein
NE0002 dnaN; DNA polymerase III, beta chain
NE0433 dnaX; dnaX; DNA polymerase III (subunits tau and gamma) protein
NE1137 holA; putative DNA polymerase III (delta subunit) protein
NE2180 holB; putative DNA polymerase III (delta' subunit) protein
NE0141 dnaQ; probable DNA polymerase III (epsilon chain) protein
NE0442 holC; putative DNA polymerase III (chi subunit) protein
NE1753 lig; NAD-dependent DNA ligase
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K03555 mutS; DNA mismatch repair protein MutS
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03440 Homologous recombination [PATH:neu03440]
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NE0010 recJ; recJ: single-stranded-DNA-specific exonuclease
NE2453 ssb; Single-strand binding protein family
NE1932 recA; RecA bacterial DNA recombination protein:AAA ATPase superfamily
NE1468 polA; polA; DNA polymerase I protein
NE0212 ruvA; probable Holliday junction DNA helicase subunit
NE0213 ruvB; ruvB; holliday junction DNA helicase protein
NE0211 ruvC; Crossover junction endodeoxyribonuclease RuvC
NE1850 recG; RecG-like helicases
NE2525 possible ATP-dependent DNA helicase RecG-related protein
NE0383 conserved hypothetical protein
NE1978 dnaE1; dnaE1; DNA polymerase III (alpha chain) protein
NE0002 dnaN; DNA polymerase III, beta chain
NE0433 dnaX; dnaX; DNA polymerase III (subunits tau and gamma) protein
NE1137 holA; putative DNA polymerase III (delta subunit) protein
NE2180 holB; putative DNA polymerase III (delta' subunit) protein
NE0141 dnaQ; probable DNA polymerase III (epsilon chain) protein
NE0442 holC; putative DNA polymerase III (chi subunit) protein
NE1505 priA; probable priA; primosomal protein N' (replication factor Y)
NE0197 conserved hypothetical protein
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:neu03000]
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03021 Transcription machinery [BR:neu03021]
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03019 Messenger RNA biogenesis [BR:neu03019]
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03041 Spliceosome
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03011 Ribosome [BR:neu03011]
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03009 Ribosome biogenesis [BR:neu03009]
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03016 Transfer RNA biogenesis [BR:neu03016]
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03012 Translation factors [BR:neu03012]
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03110 Chaperones and folding catalysts [BR:neu03110]
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04131 Membrane trafficking [BR:neu04131]
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04121 Ubiquitin system [BR:neu04121]
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03051 Proteasome [BR:neu03051]
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03032 DNA replication proteins [BR:neu03032]
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NE0140 rnhA; probable ribonuclease hi protein
NE2207 hupB; Bacterial histone-like DNA-binding protein
NE0952 ihfA; Bacterial histone-like DNA-binding protein
NE1961 ihfB; Bacterial histone-like DNA-binding protein
NE0001 dnaA; dnaA; chromosomal replication initiator protein
NE0194 dnaB; dnaB; replicative DNA helicase protein
NE0228 CHC2 zinc finger
NE2453 ssb; Single-strand binding protein family
NE1978 dnaE1; dnaE1; DNA polymerase III (alpha chain) protein
NE0002 dnaN; DNA polymerase III, beta chain
NE0442 holC; putative DNA polymerase III (chi subunit) protein
NE1137 holA; putative DNA polymerase III (delta subunit) protein
NE2180 holB; putative DNA polymerase III (delta' subunit) protein
NE0141 dnaQ; probable DNA polymerase III (epsilon chain) protein
NE0433 dnaX; dnaX; DNA polymerase III (subunits tau and gamma) protein
NE1707 rnhB; Ribonuclease HII and HIII
NE1468 polA; polA; DNA polymerase I protein
NE1753 lig; NAD-dependent DNA ligase
NE0098 conserved hypothetical protein
NE0332 gyrA; DNA gyrase/topoisomerase IV, subunit A
NE0003 gyrB; DNA gyrase, subunit B:DNA topoisomerase II gyrB
NE1966 topB; topB; DNA topoisomerase III protein
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K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K02313 dnaA; chromosomal replication initiator protein
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K10763 hda; DnaA-homolog protein
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
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03036 Chromosome and associated proteins [BR:neu03036]
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03400 DNA repair and recombination proteins [BR:neu03400]
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NE0885 ogt; Methylated-DNA--protein-cysteine methyltransferase
NE0056 mutY; HhH-GPD
NE2223 nth; HhH-GPD:Iron-sulfur cluster loop (FCL)
NE2215 NUDIX hydrolase
NE1462 dut; dUTPase
NE1560 conserved hypothetical protein
NE0931 conserved hypothetical protein
NE1398 putative DNA polymerase-related protein, bacteriophage-type
NE0981 HhH-GPD
NE2552 mutM; Formamidopyrimidine-DNA glycolase
NE2192 xthA2; Exodeoxyribonuclease III:Exodeoxyribonuclease III xth
NE0023 xthA1; Exodeoxyribonuclease III:Exodeoxyribonuclease III xth
NE0010 recJ; recJ: single-stranded-DNA-specific exonuclease
NE1753 lig; NAD-dependent DNA ligase
NE1468 polA; polA; DNA polymerase I protein
NE2455 uvrA1; ABC transporter:Excinuclease ABC A subunit
NE0785 uvrB; Helicase subunit of the DNA excision repair complex
NE0933 uvrC; uvrC Nuclease subunit of the excinuclease complex
NE1473 uvrD; UvrD/REP helicase
NE2046 rpoB; RNA polymerases beta subunit
NE2045 rpoC; RNA polymerase, alpha subunit
NE0426 rpoA; Bacterial RNA polymerase, alpha chain
NE2255 rpoZ; RNA polymerase omega subunit
NE0008 mfd; mfd: transcription-repair coupling factor
NE1705 mutS; mutS; DNA mismatch repair protein
NE0830 DNA mismatch repair protein MutS family, C-terminal domain
NE1742 mutL; mutL; DNA mismatch repair protein
NE0671 sbcB; exodeoxyribonuclease I
NE1172 xseA; xseA; exodeoxyribonuclease vII large subunit protein
NE1159 xseB; Exonuclease VII, small subunit
NE1978 dnaE1; dnaE1; DNA polymerase III (alpha chain) protein
NE0002 dnaN; DNA polymerase III, beta chain
NE0442 holC; putative DNA polymerase III (chi subunit) protein
NE1137 holA; putative DNA polymerase III (delta subunit) protein
NE2180 holB; putative DNA polymerase III (delta' subunit) protein
NE0141 dnaQ; probable DNA polymerase III (epsilon chain) protein
NE0433 dnaX; dnaX; DNA polymerase III (subunits tau and gamma) protein
NE2453 ssb; Single-strand binding protein family
NE1932 recA; RecA bacterial DNA recombination protein:AAA ATPase superfamily
NE0212 ruvA; probable Holliday junction DNA helicase subunit
NE0213 ruvB; ruvB; holliday junction DNA helicase protein
NE0211 ruvC; Crossover junction endodeoxyribonuclease RuvC
NE1505 priA; probable priA; primosomal protein N' (replication factor Y)
NE0197 conserved hypothetical protein
NE1392 sbcC; ATP/GTP-binding site motif A (P-loop):ABC transporter
NE1390 sbcD; Serine/threonine specific protein phosphatase:Exonuclease SbcD
NE1808 radA; sms: DNA repair protein RadA
NE1850 recG; RecG-like helicases
NE2525 possible ATP-dependent DNA helicase RecG-related protein
NE0383 conserved hypothetical protein
NE1479 recN; ABC transporter:DNA repair protein RecN
NE0507 rdgC; putative recombination associated protein rdgC
NE0111 Protein of unknown function DUF48
NE0844 Protein of unknown function DUF48
NE1263 conserved hypothetical protein
NE0332 gyrA; DNA gyrase/topoisomerase IV, subunit A
NE0003 gyrB; DNA gyrase, subunit B:DNA topoisomerase II gyrB
NE2207 hupB; Bacterial histone-like DNA-binding protein
NE0875 fis; probable factor-for-inversion-stimulation transcription regulator protein
NE0952 ihfA; Bacterial histone-like DNA-binding protein
NE1961 ihfB; Bacterial histone-like DNA-binding protein
NE2564 recQ; ATP-dependent DNA helicase RecQ
NE0093 recQ; ATP-dependent DNA helicase
NE2520 ATP-dependent DNA helicase RecQ
NE1339 H-NS histone family
NE1219 UMUC family (DNA-repair)
NE1931 recX; RecX regulatory protein
NE0880 probable ATP-dependent DNA helicase-related protein
NE2423 nrdA; Ribonucleotide reductase large subunit
NE2422 nrdB; Ribonucleotide reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:neu03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Nitrosomonas europaea