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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:pfv03030]
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03410 Base excision repair [PATH:pfv03410]
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 Psefu_3368 endonuclease III
Psefu_3256 Uracil-DNA glycosylase
Psefu_3925 A/G-specific adenine glycosylase
Psefu_0166 Formamidopyrimidine-DNA glycosylase
Psefu_2085 Methylated-DNA--(protein)-cysteine S-methyltransferase
Psefu_0018 DNA-3-methyladenine glycosylase I
Psefu_0310 leucyl-tRNA synthetase
Psefu_0188 exodeoxyribonuclease III Xth
Psefu_2520 exodeoxyribonuclease III
Psefu_4313 DNA polymerase I
Psefu_1147 single-stranded-DNA-specific exonuclease RecJ
Psefu_0340 DNA ligase (NAD(+))
Psefu_2622 DNA ligase
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K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03420 Nucleotide excision repair [PATH:pfv03420]
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03430 Mismatch repair [PATH:pfv03430]
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03440 Homologous recombination [PATH:pfv03440]
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03450 Non-homologous end-joining [PATH:pfv03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:pfv03000]
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03021 Transcription machinery [BR:pfv03021]
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03019 Messenger RNA biogenesis [BR:pfv03019]
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03041 Spliceosome
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03011 Ribosome [BR:pfv03011]
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03009 Ribosome biogenesis [BR:pfv03009]
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03016 Transfer RNA biogenesis [BR:pfv03016]
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03012 Translation factors [BR:pfv03012]
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03110 Chaperones and folding catalysts [BR:pfv03110]
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04131 Membrane trafficking [BR:pfv04131]
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04121 Ubiquitin system [BR:pfv04121]
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03051 Proteasome [BR:pfv03051]
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03032 DNA replication proteins [BR:pfv03032]
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03036 Chromosome and associated proteins [BR:pfv03036]
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03400 DNA repair and recombination proteins [BR:pfv03400]
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Psefu_2084 methylated-DNA/protein-cysteine methyltransferase
Psefu_0934 Deoxyribodipyrimidine photo-lyase
Psefu_3256 Uracil-DNA glycosylase
Psefu_3925 A/G-specific adenine glycosylase
Psefu_3368 endonuclease III
Psefu_1673 helicase c2
Psefu_1639 NUDIX hydrolase
Psefu_3553 mutator MutT protein
Psefu_2970 NUDIX hydrolase
Psefu_3999 NUDIX hydrolase
Psefu_4305 Deoxyuridine 5'-triphosphate nucleotidohydrolase
Psefu_0533 Ada DNA repair protein and transcriptional regulator, AraC family
Psefu_0310 leucyl-tRNA synthetase
Psefu_2085 Methylated-DNA--(protein)-cysteine S-methyltransferase
Psefu_0018 DNA-3-methyladenine glycosylase I
Psefu_0166 Formamidopyrimidine-DNA glycosylase
Psefu_0188 exodeoxyribonuclease III Xth
Psefu_2520 exodeoxyribonuclease III
Psefu_0777 Endonuclease V
Psefu_1147 single-stranded-DNA-specific exonuclease RecJ
Psefu_0340 DNA ligase (NAD(+))
Psefu_2622 DNA ligase
Psefu_4313 DNA polymerase I
Psefu_0669 UvrABC system protein A
Psefu_3085 UvrABC system protein B
Psefu_2431 UvrABC system protein C
Psefu_0119 UvrD/REP helicase
Psefu_1244 pathogenesis-related protein
Psefu_0633 DNA-directed RNA polymerase subunit beta
Psefu_0634 DNA-directed RNA polymerase subunit beta'
Psefu_0665 DNA-directed RNA polymerase subunit alpha
Psefu_0291 DNA-directed RNA polymerase subunit omega
Psefu_2908 transcription-repair coupling factor
Psefu_1324 DNA mismatch repair protein mutS
Psefu_4108 DNA mismatch repair protein mutL
Psefu_0971 Exodeoxyribonuclease I
Psefu_1413 Exodeoxyribonuclease 7 large subunit
Psefu_3771 Exodeoxyribonuclease 7 small subunit
Psefu_3417 DNA polymerase III, alpha subunit
Psefu_0002 DNA polymerase III, beta subunit
Psefu_3319 DNA polymerase III chi subunit HolC
Psefu_3461 DNA polymerase III, delta subunit
Psefu_2723 DNA polymerase III, delta prime subunit
Psefu_0833 Exonuclease RNase T and DNA polymerase III
Psefu_2261 DNA polymerase III, epsilon subunit
Psefu_3859 Exonuclease RNase T and DNA polymerase III
Psefu_2839 DNA polymerase III, subunits gamma and tau
Psefu_0671 single-strand binding protein
Psefu_1472 D12 class N6 adenine-specific DNA methyltransferase
Psefu_2736 exodeoxyribonuclease V, beta subunit
Psefu_2737 exodeoxyribonuclease V, gamma subunit
Psefu_2735 exodeoxyribonuclease V, alpha subunit
Psefu_1326 Protein recA
Psefu_1528 Holliday junction ATP-dependent DNA helicase ruvA
Psefu_1529 Holliday junction ATP-dependent DNA helicase ruvB
Psefu_1527 Crossover junction endodeoxyribonuclease ruvC
Psefu_0416 primosomal protein N'
Psefu_1143 SMC domain protein
Psefu_1137 nuclease SbcCD, D subunit
Psefu_3970 DNA repair protein RadA
Psefu_0003 DNA replication and repair protein recF
Psefu_0283 ATP-dependent DNA helicase RecG
Psefu_3233 DNA repair protein recO
Psefu_2837 Recombination protein recR
Psefu_3603 DNA repair protein RecN
Psefu_3147 Recombination-associated protein rdgC
Psefu_0977 protein of unknown function DUF853 NPT hydrolase
Psefu_2817 DNA repair protein
Psefu_2816 DNA ligase D
Psefu_2016 DNA gyrase, A subunit
Psefu_0004 DNA gyrase, B subunit
Psefu_2291 DNA topoisomerase
Psefu_2915 DNA topoisomerase I
Psefu_0280 histone family protein DNA-binding protein
Psefu_2620 histone family protein DNA-binding protein
Psefu_2250 histone family protein DNA-binding protein
Psefu_4018 transcriptional regulator, Fis family
Psefu_2750 Integration host factor subunit alpha
Psefu_1971 Integration host factor subunit beta
Psefu_1983 ATP-dependent DNA helicase RecQ
Psefu_4024 ATP-dependent DNA helicase, RecQ family
Psefu_1482 DNA polymerase IV
Psefu_1476 DNA-directed DNA polymerase
Psefu_1475 Peptidase S24/S26A/S26B, conserved region
Psefu_2911 SOS-response transcriptional repressor, LexA
Psefu_4133 DNA polymerase B region
Psefu_3189 cell division inhibitor SulA, putative
Psefu_3190 DNA repair nucleotidyltransferase/DNA polymerase-like protein
Psefu_3191 Error-prone DNA polymerase
Psefu_1327 Regulatory protein recX
Psefu_0717 ATP-dependent DNA helicase Rep
Psefu_3341 helicase c2
Psefu_2076 DEAD/H associated domain protein
Psefu_1782 ribonucleoside-diphosphate reductase, alpha subunit
Psefu_1781 Ribonucleoside-diphosphate reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:pfv03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Pseudomonas fulva