PSHAa0516 recJ; Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific
       PSHAa2705 ssb; Single-strand binding protein (SSB) (Helix-destabilizing protein)
       PSHAa0003 recF; gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction
       PSHAa0734 recO; DNA repair protein recO (Recombination protein O)
       PSHAa1203 recR; recombination protein recR
       PSHAa0694 recA; RecA protein (Recombinase A)
       PSHAa2757 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal)
       PSHAa1876 ruvA; Holliday junction helicase, subunit A
       PSHAa1875 ruvB; Holliday junction helicase, subunit B
       PSHAa1877 ruvC; Holliday junction nuclease
       PSHAa2799 recG; ATP-dependent DNA helicase recG
       PSHAa1858 recB; exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
       PSHAa1859 recC; exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
       PSHAa1857 recD; exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
       PSHAa2015 dnaE; DNA polymerase III, alpha subunit; the entire polymerase contains 10 subunits
       PSHAa0002 dnaN; DNA polymerase III, beta-subunit; processivity clamp of DNA polymerase III
       PSHAa1201 putative DnaX, DNA polymerase III, gamma/tau subunits
       PSHAa1029 holA; Putative DNA polymerase III, delta subunit, probably ATP hydrolase
       PSHAa1802 holB; putative DNA polymerase III delta' subunit
       PSHAa1435 putative DNA polymerase III, epsilon subunit
       PSHAa1963 dnaQ; DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function
       PSHAa0589 putative DNA polymerase, exonuclease activity
       PSHAa1996 conserved protein of unknown function; putative enzyme
       PSHAa2424 holC; DNA polymerase III, chi subunit
       PSHAa2728 priA; Primosome factor Y, also called protein n'; ATP-dependent DNA helicase activity required for recA-dependent stable DNA replication mode; also involved in double-strand break repair
       PSHAa2441 priB; primosomal replication protein N
       PSHAa1993 conserved protein of unknown function

K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''

       PSHAb0293 ogt; putative Methylated-DNA-[protein]-cysteine S-methyltransferase; O6-methylguanine-DNA methyltransferase
       PSHAa2200 putative deoxyribodipyrimidine photolyase
       PSHAb0453 phr; putative deoxyribodipyrimidine photolyase
       PSHAa2561 ung; uracil-DNA-glycosylase
       PSHAa0554 mutY; A/G-specific adenine glycosylase
       PSHAa1099 nth; endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil
       PSHAb0342 putative S1/P1 Nuclease
       PSHAa2744 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP
       PSHAa0994 conserved protein of unknown function
       PSHAb0291 putative ADA regulatory protein (Regulatory protein of adaptative response)
       PSHAa0788 tag; putative 3-methyl-adenine DNA glycosylase I
       PSHAa0447 mutM; formamidopyrimidine DNA glycosylase
       PSHAa1339 xthA; exonuclease III
       PSHAa0516 recJ; Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific
       PSHAa1083 ligA; NAD-dependent DNA ligase
       PSHAa2757 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal)
       PSHAa2707 uvrA; DNA excision repair enzyme subunit, with UvrBC
       PSHAa1110 uvrB; ATP-dependent DNA excision repair enzyme UvrAC
       PSHAa1915 uvrC; DNA repair enzyme together with UvrAB; incision nuclease subunit C; repair of UV damage to DNA
       PSHAa0122 uvrD; DNA-dependent ATPase I and helicase II; highly similar to PSHA_1_2804
       PSHAa1096 uvrD; DNA helicase II.
       PSHAa0222 rpoB; DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit)
       PSHAa0223 rpoC; RNA polymerase, beta prime subunit
       PSHAa2806 rpoA; DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit)
       PSHAa2791 rpoZ; DNA-directed RNA polymerase omega chain (EC 2.7. 7.6) (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit)
       PSHAa1836 mfd; transcription-repair ATP-dependent coupling factor
       PSHAa0692 mutS; methyl-directed mismatch repair ATP-binding protein, dimer/tetramer, associates to MutL, triggers MutH activity on hemimethylated GATC
       PSHAa0269 mutL; Enzyme in GATC methyl-directed mismatch repair, stimulates binding of Vsr and MutS to heteroduplex DNA
       PSHAa0743 mutH; methyl-directed mismatch repair protein with restriction endonuclease-like domain
       PSHAa1255 sbcB; exodeoxyribonuclease I
       PSHAa0647 xseA; exonuclease VII, large subunit
       PSHAa2364 xseB; exonuclease VII small subunit
       PSHAa2015 dnaE; DNA polymerase III, alpha subunit; the entire polymerase contains 10 subunits
       PSHAa0002 dnaN; DNA polymerase III, beta-subunit; processivity clamp of DNA polymerase III
       PSHAa2424 holC; DNA polymerase III, chi subunit
       PSHAa1029 holA; Putative DNA polymerase III, delta subunit, probably ATP hydrolase
       PSHAa1802 holB; putative DNA polymerase III delta' subunit
       PSHAa1435 putative DNA polymerase III, epsilon subunit
       PSHAa1963 dnaQ; DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function
       PSHAa0589 putative DNA polymerase, exonuclease activity
       PSHAa1996 conserved protein of unknown function; putative enzyme
       PSHAa1201 putative DnaX, DNA polymerase III, gamma/tau subunits
       PSHAa2705 ssb; Single-strand binding protein (SSB) (Helix-destabilizing protein)
       PSHAa2712 dam; DNA adenine methylase
       PSHAa1858 recB; exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
       PSHAa1859 recC; exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
       PSHAa1857 recD; exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
       PSHAa0694 recA; RecA protein (Recombinase A)
       PSHAa1876 ruvA; Holliday junction helicase, subunit A
       PSHAa1875 ruvB; Holliday junction helicase, subunit B
       PSHAa1877 ruvC; Holliday junction nuclease
       PSHAa2728 priA; Primosome factor Y, also called protein n'; ATP-dependent DNA helicase activity required for recA-dependent stable DNA replication mode; also involved in double-strand break repair
       PSHAa2441 priB; primosomal replication protein N
       PSHAa1993 conserved protein of unknown function
       PSHAb0054 sbcC; exonuclease sbcCD subunit C
       PSHAa1895 putative orphan protein
       PSHAb0055 sbcD; exonuclease sbcCD subunit D
       PSHAa0663 radA; putative DNA repair protein radA (DNA repair protein sms)
       PSHAa0003 recF; gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction
       PSHAa2799 recG; ATP-dependent DNA helicase recG
       PSHAa0734 recO; DNA repair protein recO (Recombination protein O)
       PSHAa1203 recR; recombination protein recR
       PSHAa1218 recN; DNA repair protein recN
       PSHAa2381 rdgC; nucleoid-associated protein
       PSHAa1985 yejH; putative ATP-dependent helicase with nucleoside triP hydrolase domain
       PSHAa1421 gyrA; DNA gyrase, subunit A, type II topoisomerase
       PSHAa0004 gyrB; DNA gyrase, subunit B (type II topoisomerase)
       PSHAa1348 topA; DNA topoisomerase type I, omega protein
       PSHAa1287 hupA; DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translation
       PSHAb0462 hupB; DNA-binding protein HU-beta (NS1) (HU-1)
       PSHAa2059 hupB; DNA-binding protein HU-beta (NS1) (HU-1)
       PSHAa0346 fis; DNA-binding protein for site-specific recombination and inversion, transcription of rRNA and tRNA operons, and DNA replication
       PSHAa1902 ihfA; integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication
       PSHAa1426 ihfB; putative integration host factor (iHF), beta subunit, site-specific recombination
       PSHAa2572 recQ; ATP-dependent DNA helicase
       PSHAb0119 putative helicase (recQ-like)
       PSHAa2389 dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P
       PSHAb0536 umuC; component of DNA polymerase V with UmuD
       PSHAb0537 umuD; component of DNA polymerase V
       PSHAa2873 lexA; transcriptional repressor for SOS response
       PSHAa1990 DNA polymerase II
       PSHAa0531 recX; putative regulatory protein, inhibitor of RecA recombinase and coprotease activities
       PSHAa2762 rep; Rep helicase, a single-stranded DNA-dependent ATPase
       PSHAa1890 helD; putative helicase IV
       PSHAb0497 yoaA; putative ATP-dependent helicase YoaA with nucleotide triphosphate hydrolase domain, SOS repair, DinG family
       PSHAa1991 dinG; putative ATP-dependent helicase DinG
       PSHAa1418 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit
       PSHAa1417 nrdB; ribonucleoside-diphosphate reductase 1, beta subunit

K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K05986 NUCS; nuclease S1 [EC:3.1.30.1]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K19789 radD; DNA repair protein RadD
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]