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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:pne03030]
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03410 Base excision repair [PATH:pne03410]
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03420 Nucleotide excision repair [PATH:pne03420]
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 Pnec_0912 transcription-repair coupling factor
Pnec_1610 excinuclease ABC, A subunit
Pnec_0467 excinuclease ABC, B subunit
Pnec_0423 excinuclease ABC, C subunit
Pnec_1433 UvrD/REP helicase
Pnec_1429 DNA polymerase I
Pnec_0503 DNA ligase, NAD-dependent
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K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03430 Mismatch repair [PATH:pne03430]
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03440 Homologous recombination [PATH:pne03440]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:pne03000]
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03021 Transcription machinery [BR:pne03021]
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03019 Messenger RNA biogenesis [BR:pne03019]
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03041 Spliceosome
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03011 Ribosome [BR:pne03011]
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03009 Ribosome biogenesis [BR:pne03009]
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03016 Transfer RNA biogenesis [BR:pne03016]
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03012 Translation factors [BR:pne03012]
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03110 Chaperones and folding catalysts [BR:pne03110]
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04131 Membrane trafficking [BR:pne04131]
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04121 Ubiquitin system
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03051 Proteasome
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03032 DNA replication proteins [BR:pne03032]
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03036 Chromosome and associated proteins [BR:pne03036]
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03400 DNA repair and recombination proteins [BR:pne03400]
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Pnec_0204 methylated-DNA--protein-cysteine methyltransferase
Pnec_0263 Deoxyribodipyrimidine photo-lyase
Pnec_0151 Uracil-DNA glycosylase superfamily
Pnec_1621 A/G-specific adenine glycosylase
Pnec_0463 endonuclease III
Pnec_0197 NUDIX hydrolase
Pnec_1461 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Pnec_1265 Uncharacterized deoxyribodipyrimidine photolyase-like protein
Pnec_0925 conserved hypothetical protein
Pnec_0979 HhH-GPD family protein
Pnec_1622 formamidopyrimidine-DNA glycosylase
Pnec_0701 exodeoxyribonuclease III Xth
Pnec_1725 exodeoxyribonuclease III Xth
Pnec_0487 single-stranded-DNA-specific exonuclease RecJ
Pnec_0503 DNA ligase, NAD-dependent
Pnec_1429 DNA polymerase I
Pnec_1610 excinuclease ABC, A subunit
Pnec_0467 excinuclease ABC, B subunit
Pnec_0423 excinuclease ABC, C subunit
Pnec_1433 UvrD/REP helicase
Pnec_0042 DNA-directed RNA polymerase, beta subunit
Pnec_0043 DNA-directed RNA polymerase, beta' subunit
Pnec_0076 DNA-directed RNA polymerase, alpha subunit
Pnec_0794 DNA-directed RNA polymerase, omega subunit
Pnec_0912 transcription-repair coupling factor
Pnec_0315 exodeoxyribonuclease VII, large subunit
Pnec_1424 Exonuclease VII small subunit
Pnec_1249 DNA polymerase III, alpha subunit
Pnec_0002 DNA polymerase III, beta subunit
Pnec_1232 DNA polymerase III chi subunit HolC
Pnec_0256 DNA polymerase III, delta subunit
Pnec_0884 DNA-directed DNA polymerase
Pnec_0839 DNA polymerase III, epsilon subunit
Pnec_0644 DNA polymerase III, subunits gamma and tau
Pnec_1608 single-strand binding protein
Pnec_1549 recA protein
Pnec_1583 Holliday junction DNA helicase RuvA
Pnec_1584 Holliday junction DNA helicase RuvB
Pnec_1582 crossover junction endodeoxyribonuclease RuvC
Pnec_0025 primosomal protein N'
Pnec_0429 putative primosomal replication protein N, PriB
Pnec_0497 DNA repair protein RadA
Pnec_1504 ATP-dependent DNA helicase RecG
Pnec_0415 DNA repair protein RecO
Pnec_0646 recombination protein RecR
Pnec_1490 DNA repair protein RecN
Pnec_1489 DNA repair protein RecN
Pnec_0641 UvrD/REP helicase
Pnec_0640 inactivated superfamily I helicase-like protein
Pnec_1315 DNA gyrase, A subunit
Pnec_0003 DNA gyrase, B subunit
Pnec_1743 histone family protein DNA-binding protein
Pnec_1580 transcriptional regulator, Fis family
Pnec_1004 integration host factor, alpha subunit
Pnec_1307 histone family protein DNA-binding protein
Pnec_0426 transcriptional repressor, LexA family
Pnec_1548 regulatory protein RecX
Pnec_0222 ribonucleoside-diphosphate reductase, alpha subunit
Pnec_0223 Ribonucleoside-diphosphate reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04485 radA; DNA repair protein RadA/Sms
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:pne03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Polynucleobacter necessarius