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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:ppt03030]
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03410 Base excision repair [PATH:ppt03410]
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03420 Nucleotide excision repair [PATH:ppt03420]
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03430 Mismatch repair [PATH:ppt03430]
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03440 Homologous recombination [PATH:ppt03440]
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 PPS_1128 single-stranded-DNA-specific exonuclease RecJ
PPS_0481 single-stranded DNA-binding protein
PPS_2367 single-stranded DNA-binding protein
PPS_0011 recombination protein F
PPS_4213 DNA repair protein RecO
PPS_3657 recombination protein RecR
PPS_1281 recombinase A
PPS_0088 DNA polymerase I
PPS_4001 Holliday junction DNA helicase RuvA
PPS_4000 Holliday junction DNA helicase RuvB
PPS_4002 Holliday junction resolvase
PPS_5159 ATP-dependent DNA helicase RecG
PPS_4516 exodeoxyribonuclease V, beta subunit
PPS_4517 exodeoxyribonuclease V, gamma subunit
PPS_4515 exodeoxyribonuclease V, alpha subunit
PPS_1201 DNA polymerase III, alpha subunit
PPS_0010 DNA polymerase III, beta subunit
PPS_3659 DNA polymerase III, gamma and tau subunits
PPS_4638 DNA polymerase III, delta subunit
PPS_1553 DNA polymerase III, delta subunit
PPS_4607 DNA polymerase III, epsilon subunit
PPS_3538 DNA polymerase III, epsilon subunit
PPS_0349 DNA polymerase III, epsilon subunit
PPS_1007 DNA polymerase III subunit chi
PPS_4933 primosome assembly protein PriA
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:ppt03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:ppt03000]
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03021 Transcription machinery [BR:ppt03021]
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03019 Messenger RNA biogenesis [BR:ppt03019]
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03041 Spliceosome
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03011 Ribosome [BR:ppt03011]
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03009 Ribosome biogenesis [BR:ppt03009]
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03016 Transfer RNA biogenesis [BR:ppt03016]
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03012 Translation factors [BR:ppt03012]
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03110 Chaperones and folding catalysts [BR:ppt03110]
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04131 Membrane trafficking [BR:ppt04131]
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04121 Ubiquitin system [BR:ppt04121]
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03051 Proteasome [BR:ppt03051]
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03032 DNA replication proteins [BR:ppt03032]
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03036 Chromosome and associated proteins [BR:ppt03036]
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03400 DNA repair and recombination proteins [BR:ppt03400]
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PPS_2617 methylated-DNA-protein-cysteine methyltransferase
PPS_0796 deoxyribodipyrimidine photo-lyase
PPS_4236 uracil-DNA glycosylase
PPS_4654 3-methyladenine DNA glycosylase
PPS_0280 A/G-specific adenine glycosylase
PPS_4163 endonuclease III
PPS_2506 DEAD_2 domain-containing protein
PPS_4345 conserved hypothetical protein
PPS_2672 MutT/nudix family protein
PPS_2705 MutT/nudix family protein
PPS_3157 NUDIX hydrolase
PPS_5137 deoxyuridine 5'-triphosphate nucleotidohydrolase
PPS_0704 methylated-DNA-protein-cysteine methyltransferase
PPS_2200 deoxyribodipyrimidine photolyase-related protein
PPS_2870 2OG-Fe(II) oxygenase
PPS_0703 DNA-3-methyladenine glycosylase II
PPS_2874 alcohol dehydrogenase
PPS_0025 DNA-3-methyladenine glycosylase I
PPS_4970 formamidopyrimidine-DNA glycosylase
PPS_3020 exonuclease III
PPS_2253 exodeoxyribonuclease III
PPS_5141 exodeoxyribonuclease III Xth
PPS_1128 single-stranded-DNA-specific exonuclease RecJ
PPS_3678 NAD-dependent DNA ligase LigA
PPS_4812 NAD-dependent DNA ligase LigB
PPS_0088 DNA polymerase I
PPS_2850 excinuclease ABC subunit A
PPS_0754 excinuclease ABC subunit A
PPS_0479 excinuclease ABC subunit A
PPS_1562 excinuclease ABC subunit B
PPS_3495 excinuclease ABC subunit C
PPS_5201 DNA-dependent helicase II
PPS_3360 pathogenesis-related protein
PPS_0443 DNA-directed RNA polymerase, beta subunit
PPS_0444 DNA-directed RNA polymerase, beta subunit
PPS_0475 DNA-directed RNA polymerase, alpha subunit
PPS_5150 DNA-directed RNA polymerase, omega subunit
PPS_1219 DNA mismatch repair protein MutS
PPS_4739 DNA mismatch repair protein
PPS_4290 exonuclease I
PPS_1056 exodeoxyribonuclease VII, large subunit
PPS_0524 exodeoxyribonuclease VII, small subunit
PPS_1201 DNA polymerase III, alpha subunit
PPS_0010 DNA polymerase III, beta subunit
PPS_1007 DNA polymerase III subunit chi
PPS_4638 DNA polymerase III, delta subunit
PPS_1553 DNA polymerase III, delta subunit
PPS_4607 DNA polymerase III, epsilon subunit
PPS_3538 DNA polymerase III, epsilon subunit
PPS_0349 DNA polymerase III, epsilon subunit
PPS_3659 DNA polymerase III, gamma and tau subunits
PPS_0481 single-stranded DNA-binding protein
PPS_2367 single-stranded DNA-binding protein
PPS_1778 D12 class N6 adenine-specific DNA methyltransferase
PPS_4516 exodeoxyribonuclease V, beta subunit
PPS_4517 exodeoxyribonuclease V, gamma subunit
PPS_4515 exodeoxyribonuclease V, alpha subunit
PPS_1281 recombinase A
PPS_4001 Holliday junction DNA helicase RuvA
PPS_4000 Holliday junction DNA helicase RuvB
PPS_4002 Holliday junction resolvase
PPS_4933 primosome assembly protein PriA
PPS_1611 SMC domain-containing protein
PPS_1612 nuclease SbcCD subunit D
PPS_4474 DNA repair protein RadA
PPS_0011 recombination protein F
PPS_5159 ATP-dependent DNA helicase RecG
PPS_4213 DNA repair protein RecO
PPS_3657 recombination protein RecR
PPS_4575 DNA repair protein RecN
PPS_1350 recombination associated protein
PPS_4283 conserved hypothetical protein
PPS_2720 Ku family containing protein
PPS_2715 ATP-dependent DNA ligase
PPS_1408 DNA gyrase subunit A
PPS_0012 DNA gyrase subunit B
PPS_1702 DNA topoisomerase I
PPS_3313 DNA topoisomerase
PPS_5162 histone family protein DNA-binding protein
PPS_1003 histone family protein DNA-binding protein
PPS_1885 histone family protein DNA-binding protein
PPS_4663 DNA-binding protein Fis
PPS_2038 integration host factor, alpha subunit
PPS_1414 integration host factor, beta subunit
PPS_3863 ATP-dependent DNA helicase RecQ
PPS_4014 DNA polymerase IV
PPS_1972 DNA-directed DNA polymerase
PPS_2814 LexA repressor
PPS_1706 LexA repressor
PPS_1981 DNA polymerase II
PPS_2813 conserved hypothetical protein
PPS_2812 conserved hypothetical protein
PPS_2811 error-prone DNA polymerase
PPS_1282 recombination regulator RecX
PPS_5116 ATP-dependent DNA helicase Rep
PPS_4136 ATP-dependent DNA helicase DinG
PPS_4152 DEAD/DEAH box helicase domain-containing protein
PPS_4194 DEAD/DEAH box helicase domain-containing protein
PPS_4035 ribonucleotide-diphosphate reductase, alpha subunit
PPS_4036 ribonucleotide-diphosphate reductase, beta subunit
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:ppt03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Pseudomonas putida S16