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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:pru03030]
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03410 Base excision repair [PATH:pru03410]
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03420 Nucleotide excision repair [PATH:pru03420]
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03430 Mismatch repair [PATH:pru03430]
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03440 Homologous recombination [PATH:pru03440]
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 PRU_0555 recJ; single-stranded-DNA-specific exonuclease RecJ
PRU_0881 ssb; single-strand binding protein
PRU_0201 recF; DNA replication and repair protein RecF
PRU_2337 putative DNA repair protein RecO
PRU_0897 recR; recombination protein RecR
PRU_0066 recA; RecA protein
PRU_2485 polA; DNA-directed DNA polymerase
PRU_2041 ruvA; Holliday junction DNA helicase RuvA
PRU_2468 ruvB; Holliday junction DNA helicase RuvB
PRU_0827 ruvC; crossover junction endodeoxyribonuclease RuvC
PRU_1944 recG; ATP-dependent DNA helicase RecG
PRU_1009 divergent AAA domain protein
PRU_0534 divergent AAA domain protein
PRU_0144 divergent AAA domain protein
PRU_1058 divergent AAA domain protein
PRU_1896 dnaE; DNA polymerase III, alpha subunit
PRU_0839 dnaN; DNA polymerase III, beta subunit
PRU_1618 dnaX; DNA polymerase III, subunits gamma and tau
PRU_0540 holA; DNA polymerase III, delta subunit
PRU_1701 putative DNA polymerase III, delta prime subunit
PRU_0838 putative DNA polymerase III, epsilon subunit
PRU_1188 exonuclease
PRU_2813 exonuclease
PRU_2170 priA; primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:pru03000]
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03021 Transcription machinery [BR:pru03021]
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03019 Messenger RNA biogenesis [BR:pru03019]
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03041 Spliceosome
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03011 Ribosome [BR:pru03011]
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03009 Ribosome biogenesis [BR:pru03009]
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03016 Transfer RNA biogenesis [BR:pru03016]
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03012 Translation factors [BR:pru03012]
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03110 Chaperones and folding catalysts [BR:pru03110]
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04131 Membrane trafficking [BR:pru04131]
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04121 Ubiquitin system
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03051 Proteasome [BR:pru03051]
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03032 DNA replication proteins [BR:pru03032]
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03036 Chromosome and associated proteins [BR:pru03036]
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03400 DNA repair and recombination proteins [BR:pru03400]
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PRU_2354 ung; uracil-DNA glycosylase
PRU_2000 mutY; A/G-specific adenine glycosylase
PRU_1406 nth; endonuclease III
PRU_0662 mutT_1; mutator mutT protein
PRU_0340 nudF; ADP-ribose pyrophosphatase
PRU_0422 hydrolase, NUDIX family
PRU_0664 mutT_2; mutator mutT protein
PRU_2916 dut; dUTP diphosphatase
PRU_1657 xth; exodeoxyribonuclease III
PRU_0555 recJ; single-stranded-DNA-specific exonuclease RecJ
PRU_0567 ligA; DNA ligase (NAD(+))
PRU_2485 polA; DNA-directed DNA polymerase
PRU_1647 uvrA_2; excinuclease ABC, A subunit
PRU_1453 uvrA_1; excinuclease ABC, A subunit
PRU_1356 uvrB; excinuclease ABC, B subunit
PRU_2479 uvrC; excinuclease ABC, C subunit
PRU_0995 putative ATP-dependent DNA helicase PcrA
PRU_2135 rpoB; DNA-directed RNA polymerase, beta subunit
PRU_2134 rpoC; DNA-directed RNA polymerase, beta' subunit
PRU_2088 rpoA; DNA-directed RNA polymerase, alpha subunit
PRU_1607 mfd; transcription-repair coupling factor
PRU_2504 mutS; DNA mismatch repair protein MutS
PRU_0293 MutS2 family protein
PRU_0036 mutL; DNA mismatch repair protein MutL
PRU_0168 xseA; exodeoxyribonuclease VII, large subunit
PRU_0167 xseB; exodeoxyribonuclease VII, small subunit
PRU_1896 dnaE; DNA polymerase III, alpha subunit
PRU_0839 dnaN; DNA polymerase III, beta subunit
PRU_0540 holA; DNA polymerase III, delta subunit
PRU_1701 putative DNA polymerase III, delta prime subunit
PRU_0838 putative DNA polymerase III, epsilon subunit
PRU_1188 exonuclease
PRU_2813 exonuclease
PRU_1618 dnaX; DNA polymerase III, subunits gamma and tau
PRU_0881 ssb; single-strand binding protein
PRU_1005 DNA adenine methylase
PRU_0358 DNA mismatch endonuclease Vsr family protein
PRU_0066 recA; RecA protein
PRU_2041 ruvA; Holliday junction DNA helicase RuvA
PRU_2468 ruvB; Holliday junction DNA helicase RuvB
PRU_0827 ruvC; crossover junction endodeoxyribonuclease RuvC
PRU_2170 priA; primosomal protein N'
PRU_1745 hypothetical protein
PRU_1633 radA; DNA repair protein RadA
PRU_0201 recF; DNA replication and repair protein RecF
PRU_1944 recG; ATP-dependent DNA helicase RecG
PRU_1009 divergent AAA domain protein
PRU_0534 divergent AAA domain protein
PRU_0144 divergent AAA domain protein
PRU_1058 divergent AAA domain protein
PRU_2337 putative DNA repair protein RecO
PRU_0897 recR; recombination protein RecR
PRU_0836 recN; DNA repair protein RecN
PRU_0374 UvrD/Rep helicase family protein
PRU_1947 conserved hypothetical protein
PRU_0813 gyrA; DNA gyrase, A subunit
PRU_2340 gyrB; DNA gyrase, B subunit
PRU_2627 topA; DNA topoisomerase
PRU_2302 DNA-binding protein, HU family
PRU_0683 DNA-binding protein, HU family
PRU_0554 ATP-dependent DNA helicase, RecQ family
PRU_0991 recQ_2; ATP-dependent DNA helicase RecQ
PRU_0031 recQ_1; ATP-dependent DNA helicase RecQ
PRU_0499 putative DNA polymerase IV
PRU_0925 prophage PRU01, ImpB/MucB/SamB family protein
PRU_0508 ImpB/MucB/SamB family protein
PRU_1186 ImpB/MucB/SamB family protein
PRU_0924 umuD_1; prophage PRU01, umuD protein
PRU_1185 umuD_2; umuD protein
PRU_2397 regulatory protein RecX
PRU_0302 DHH family protein
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K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K03565 recX; regulatory protein
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:pru03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Xylanibacter ruminicola