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KO |
09100 Metabolism
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09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:psa03030]
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03410 Base excision repair [PATH:psa03410]
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03420 Nucleotide excision repair [PATH:psa03420]
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03430 Mismatch repair [PATH:psa03430]
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03440 Homologous recombination [PATH:psa03440]
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PST_2759 recJ; single-stranded-DNA-specific exonuclease RecJ
PST_0814 ssb; single-stranded DNA-binding protein
PST_0003 recF; DNA replication and repair protein RecF
PST_1233 recO; DNA repair protein RecO
PST_1822 recR; recombination protein RecR
PST_1508 recA; RecA protein
PST_0113 polA; DNA polymerase I
PST_2809 ruvA; Holliday junction DNA helicase RuvA
PST_2808 ruvB; Holliday junction DNA helicase RuvB
PST_2810 ruvC; crossover junction endodeoxyribonuclease RuvC
PST_0135 recG; ATP-dependent DNA helicase RecG
PST_0249 conserved hypothetical protein
PST_4033 recB; exodeoxyribonuclease V, beta subunit
PST_4034 recC; exodeoxyribonuclease V gamma chain
PST_4032 recD; exodeoxyribonuclease V alpha chain
PST_1552 dnaE; DNA polymerase III, alpha chain
PST_0002 dnaN; DNA polymerase III, beta subunit
PST_1820 dnaX; DNA polymerase subunits gamma and tau
PST_3770 holA; DNA polymerase III, delta subunit
PST_2616 holB; DNA polymerase III, delta prime subunit
PST_2251 dnaQ; DNA polymerase III, epsilon chain
PST_3900 exonuclease
PST_3059 holC; DNA polymerase III, chi subunit
PST_0549 priA; primosome assembly protein PriA
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:psa03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:psa03000]
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03021 Transcription machinery [BR:psa03021]
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03019 Messenger RNA biogenesis [BR:psa03019]
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03041 Spliceosome
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03011 Ribosome [BR:psa03011]
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03009 Ribosome biogenesis [BR:psa03009]
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03016 Transfer RNA biogenesis [BR:psa03016]
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03012 Translation factors [BR:psa03012]
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03110 Chaperones and folding catalysts [BR:psa03110]
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04131 Membrane trafficking [BR:psa04131]
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04121 Ubiquitin system [BR:psa04121]
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03051 Proteasome [BR:psa03051]
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03032 DNA replication proteins [BR:psa03032]
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03036 Chromosome and associated proteins [BR:psa03036]
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03400 DNA repair and recombination proteins [BR:psa03400]
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PST_1964 phrB; deoxyribodipyrimidine photolyase
PST_1216 ung; uracil-DNA glycosylase
PST_4097 mutY; A / G specific adenine glycosylase
PST_1206 nth; endonuclease III
PST_2107 rad3-related DNA helicase
PST_3163 mutT/nudix family protein
PST_3475 NTP pyrophosphohydrolase
PST_0471 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
PST_3621 transcriptional regulator, AraC family
PST_0952 conserved hypothetical protein
PST_0206 probable uracil-DNA glycosylase
PST_3963 Leucyl-tRNA synthetase
PST_2427 alkA; DNA-3-methyladenine glycosidase II
PST_0011 tag; DNA-3-methyladenine glycosidase I
PST_4007 mutM; formamidopyrimidine-DNA glycosylase
PST_0858 endonuclease
PST_2186 xthA; exodeoxyribonuclease III
PST_3108 exodeoxyribonuclease III
PST_0465 crc; catabolite repression control protein
PST_3627 endonuclease V
PST_2759 recJ; single-stranded-DNA-specific exonuclease RecJ
PST_1857 ligA; DNA ligase, NAD-dependent
PST_3931 DNA ligase, NAD-dependent, putative
PST_0113 polA; DNA polymerase I
PST_0812 uvrA; excinuclease ABC subunit A
PST_2997 uvrB; excinuclease ABC, B subunit
PST_2086 uvrC; excinuclease ABC subunit C
PST_0173 uvrD; DNA helicase II
PST_0777 rpoB; DNA-directed RNA polymerase beta chain
PST_0778 rpoC; DNA-directed RNA polymerase, beta' subunit
PST_0809 rpoA; DNA-directed RNA polymerase alpha chain
PST_0460 rpoZ; RNA polymerase omega subunit
PST_2657 mfd; transcription-repair coupling protein Mfd
PST_1505 mutS; DNA mismatch repair protein MutS
PST_3670 mutL; DNA mismatch repair protein MutL
PST_1160 sbcB; exodeoxyribonuclease I
PST_3010 xseA; exodeoxyribonuclease VII large subunit
PST_3704 xseB; exodeoxyribonuclease VII, small subunit
PST_1552 dnaE; DNA polymerase III, alpha chain
PST_0002 dnaN; DNA polymerase III, beta subunit
PST_3059 holC; DNA polymerase III, chi subunit
PST_3770 holA; DNA polymerase III, delta subunit
PST_2616 holB; DNA polymerase III, delta prime subunit
PST_2251 dnaQ; DNA polymerase III, epsilon chain
PST_3900 exonuclease
PST_1820 dnaX; DNA polymerase subunits gamma and tau
PST_0814 ssb; single-stranded DNA-binding protein
PST_3230 DNA-methyltransferase
PST_4033 recB; exodeoxyribonuclease V, beta subunit
PST_4034 recC; exodeoxyribonuclease V gamma chain
PST_4032 recD; exodeoxyribonuclease V alpha chain
PST_1508 recA; RecA protein
PST_2809 ruvA; Holliday junction DNA helicase RuvA
PST_2808 ruvB; Holliday junction DNA helicase RuvB
PST_2810 ruvC; crossover junction endodeoxyribonuclease RuvC
PST_0549 priA; primosome assembly protein PriA
PST_0847 sbcC; exonuclease SbcC
PST_0848 sbcD; exonuclease SbcD
PST_0943 radA; DNA repair protein RadA
PST_0003 recF; DNA replication and repair protein RecF
PST_0135 recG; ATP-dependent DNA helicase RecG
PST_0249 conserved hypothetical protein
PST_1233 recO; DNA repair protein RecO
PST_1822 recR; recombination protein RecR
PST_3329 recN; DNA repair protein RecN
PST_2773 recombination associated protein rdgC
PST_3750 CRISPR-associated protein Cas1
PST_1167 hypothetical protein
PST_2162 KU domain protein
PST_2130 DNA ligase, ATP-dependent, putative
PST_2161 conserved hypothetical protein
PST_2343 gyrA; DNA gyrase subunit A
PST_0004 gyrB; DNA gyrase subunit B
PST_1729 topA; DNA topoisomerase I
PST_2217 DNA topoisomerase, type I, putative
PST_0439 hupA; DNA-binding protein, HU family
PST_2064 hupB; DNA-binding protein HU
PST_3278 fis; DNA-binding protein Fis
PST_2363 ihfA; integration host factor, alpha subunit
PST_2506 ihfB; integration host factor, beta subunit
PST_2467 recQ; ATP-dependent DNA helicase RecQ
PST_0296 ATP-dependent DNA helicase domain protein
PST_2990 dinP; DNA-damage-inducible protein P
PST_3349 impB/mucB/samB family protein
PST_3355 rulA; ultraviolet light resistance protein A
PST_1734 lexA-2; LexA repressor
PST_2786 polB; DNA polymerase II
PST_2344 cell division inhibitor SulA, putative
PST_2346 nucleotidyltransferase/DNA polymerase involved in DNA repair
PST_2347 DNA polymerase III, alpha subunit, putative
PST_1509 recX; regulatory protein RecX
PST_0497 rep; ATP-dependent DNA helicase Rep
PST_1951 probable helicase
PST_1523 ATP-dependent helicase, DinG family
PST_1447 probable ATP-dependent DNA helicase
PST_2663 ATP-dependent helicase, DEAD box family
PST_3461 ATP-dependent helicase
PST_1637 nrdA; ribonucleoside reductase, large chain
PST_0109 ribonucleotide reductase, alpha subunit
PST_1636 nrdB; ribonucleoside reductase, small chain
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K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:psa03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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