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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:ral03030]
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03410 Base excision repair [PATH:ral03410]
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03420 Nucleotide excision repair [PATH:ral03420]
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03430 Mismatch repair [PATH:ral03430]
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03440 Homologous recombination [PATH:ral03440]
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 Rumal_1667 single-stranded-DNA-specific exonuclease RecJ
Rumal_3327 phosphoesterase RecJ domain protein
Rumal_3663 single-strand binding protein
Rumal_2479 single-strand binding protein
Rumal_1902 single-strand binding protein/Primosomal replication protein n
Rumal_1211 single-strand binding protein/Primosomal replication protein n
Rumal_0004 DNA replication and repair protein RecF
Rumal_1828 DNA repair protein RecO
Rumal_1263 recombination protein RecR
Rumal_2211 recA protein
Rumal_0287 DNA polymerase I
Rumal_2564 Holliday junction DNA helicase RuvA
Rumal_2561 Holliday junction DNA helicase RuvB
Rumal_2566 crossover junction endodeoxyribonuclease RuvC
Rumal_2400 ATP-dependent DNA helicase RecG
Rumal_2657 helicase, RecD/TraA family
Rumal_3282 Exodeoxyribonuclease V
Rumal_3283 Exodeoxyribonuclease V
Rumal_3066 DNA polymerase III, alpha subunit
Rumal_3286 DNA polymerase III, alpha subunit
Rumal_2122 DNA polymerase III, alpha subunit
Rumal_0002 DNA polymerase III, beta subunit
Rumal_1265 DNA polymerase III, subunits gamma and tau
Rumal_1890 DNA polymerase III, delta subunit
Rumal_3219 Exonuclease RNase T and DNA polymerase III
Rumal_3788 Exonuclease RNase T and DNA polymerase III
Rumal_3308 Exonuclease RNase T and DNA polymerase III
Rumal_1810 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:ral03000]
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03021 Transcription machinery [BR:ral03021]
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03019 Messenger RNA biogenesis [BR:ral03019]
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03041 Spliceosome
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03011 Ribosome [BR:ral03011]
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03009 Ribosome biogenesis [BR:ral03009]
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03016 Transfer RNA biogenesis [BR:ral03016]
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03012 Translation factors [BR:ral03012]
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03110 Chaperones and folding catalysts [BR:ral03110]
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04131 Membrane trafficking [BR:ral04131]
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04121 Ubiquitin system
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03051 Proteasome [BR:ral03051]
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03032 DNA replication proteins [BR:ral03032]
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03036 Chromosome and associated proteins [BR:ral03036]
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03400 DNA repair and recombination proteins [BR:ral03400]
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Rumal_1897 methylated-DNA/protein-cysteine methyltransferase
Rumal_1692 uracil-DNA glycosylase
Rumal_2012 DNA-(apurinic or apyrimidinic site) lyase
Rumal_1237 DNA-(apurinic or apyrimidinic site) lyase
Rumal_0144 NUDIX hydrolase
Rumal_3089 NUDIX hydrolase
Rumal_1635 NUDIX hydrolase
Rumal_1831 NUDIX hydrolase
Rumal_3035 NUDIX hydrolase
Rumal_0557 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Rumal_1874 exodeoxyribonuclease III Xth
Rumal_3954 Deoxyribonuclease V
Rumal_1667 single-stranded-DNA-specific exonuclease RecJ
Rumal_3327 phosphoesterase RecJ domain protein
Rumal_1735 DNA ligase, NAD-dependent
Rumal_0287 DNA polymerase I
Rumal_0448 excinuclease ABC, A subunit
Rumal_0446 excinuclease ABC, B subunit
Rumal_2463 excinuclease ABC, C subunit
Rumal_1640 UvrD/REP helicase
Rumal_1205 UvrD/REP helicase
Rumal_2919 DNA-directed RNA polymerase, beta subunit
Rumal_2918 DNA-directed RNA polymerase, beta' subunit
Rumal_0065 DNA-directed RNA polymerase, alpha subunit
Rumal_1809 DNA-directed RNA polymerase, omega subunit
Rumal_3130 transcription-repair coupling factor
Rumal_1995 DNA mismatch repair protein MutS
Rumal_1827 MutS2 family protein
Rumal_1994 DNA mismatch repair protein MutL
Rumal_1967 exodeoxyribonuclease VII, large subunit
Rumal_1966 Exonuclease VII small subunit
Rumal_3066 DNA polymerase III, alpha subunit
Rumal_3286 DNA polymerase III, alpha subunit
Rumal_2122 DNA polymerase III, alpha subunit
Rumal_0002 DNA polymerase III, beta subunit
Rumal_1890 DNA polymerase III, delta subunit
Rumal_3219 Exonuclease RNase T and DNA polymerase III
Rumal_3788 Exonuclease RNase T and DNA polymerase III
Rumal_3308 Exonuclease RNase T and DNA polymerase III
Rumal_1265 DNA polymerase III, subunits gamma and tau
Rumal_3663 single-strand binding protein
Rumal_2479 single-strand binding protein
Rumal_1902 single-strand binding protein/Primosomal replication protein n
Rumal_1211 single-strand binding protein/Primosomal replication protein n
Rumal_1391 D12 class N6 adenine-specific DNA methyltransferase
Rumal_2926 DNA adenine methylase
Rumal_0666 DNA adenine methylase
Rumal_0709 DNA mismatch endonuclease Vsr
Rumal_2657 helicase, RecD/TraA family
Rumal_3282 Exodeoxyribonuclease V
Rumal_3283 Exodeoxyribonuclease V
Rumal_2211 recA protein
Rumal_2564 Holliday junction DNA helicase RuvA
Rumal_2561 Holliday junction DNA helicase RuvB
Rumal_2566 crossover junction endodeoxyribonuclease RuvC
Rumal_1810 primosomal protein N'
Rumal_2584 DNA repair ATPase
Rumal_2583 nuclease SbcCD, D subunit
Rumal_2331 DNA repair protein RadA
Rumal_0004 DNA replication and repair protein RecF
Rumal_2400 ATP-dependent DNA helicase RecG
Rumal_1828 DNA repair protein RecO
Rumal_1263 recombination protein RecR
Rumal_1960 DNA repair protein RecN
Rumal_3723 UvrD/REP helicase
Rumal_3724 hypothetical protein
Rumal_1134 CRISPR-associated protein Cas1
Rumal_0011 DNA gyrase, A subunit
Rumal_2388 DNA topoisomerase (ATP-hydrolyzing)
Rumal_3508 DNA topoisomerase (ATP-hydrolyzing)
Rumal_3495 DNA gyrase subunit B domain protein
Rumal_2386 DNA topoisomerase (ATP-hydrolyzing)
Rumal_0008 DNA gyrase, B subunit
Rumal_3076 DNA topoisomerase I
Rumal_3542 histone family protein DNA-binding protein
Rumal_0961 histone family protein DNA-binding protein
Rumal_3814 hypothetical protein
Rumal_1588 histone family protein DNA-binding protein
Rumal_2955 ATP-dependent DNA helicase RecQ
Rumal_3899 DNA-directed DNA polymerase
Rumal_3416 UMUC domain protein DNA-repair protein
Rumal_1858 UMUC domain protein DNA-repair protein
Rumal_0302 transcriptional repressor, LexA family
Rumal_3450 transcriptional regulator, XRE family
Rumal_2210 regulatory protein RecX
Rumal_2149 DEAD/DEAH box helicase domain protein
Rumal_3016 phosphoesterase RecJ domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:ral03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Ruminococcus albus