KEGG Orthology (KO) - Rhodanobacter denitrificans

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:rhd03030]
     03410 Base excision repair [PATH:rhd03410]
     03420 Nucleotide excision repair [PATH:rhd03420]
     03430 Mismatch repair [PATH:rhd03430]
     03440 Homologous recombination [PATH:rhd03440]
     03450 Non-homologous end-joining
       R2APBS1_0679 DNA polymerase LigD, polymerase domain protein
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
   09126 Chromosome
 
   09125 Information processing in viruses
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:rhd03000]
     03021 Transcription machinery [BR:rhd03021]
     03019 Messenger RNA biogenesis [BR:rhd03019]
     03041 Spliceosome
     03011 Ribosome [BR:rhd03011]
     03009 Ribosome biogenesis [BR:rhd03009]
     03016 Transfer RNA biogenesis [BR:rhd03016]
     03012 Translation factors [BR:rhd03012]
     03110 Chaperones and folding catalysts [BR:rhd03110]
     04131 Membrane trafficking [BR:rhd04131]
     04121 Ubiquitin system
     03051 Proteasome [BR:rhd03051]
     03032 DNA replication proteins [BR:rhd03032]
     03036 Chromosome and associated proteins [BR:rhd03036]
     03400 DNA repair and recombination proteins [BR:rhd03400]
       R2APBS1_2352 O-6-methylguanine DNA methyltransferase
       R2APBS1_0205 deoxyribodipyrimidine photolyase
       R2APBS1_3530 Uracil-DNA glycosylase
       R2APBS1_2741 DNA-3-methyladenine glycosylase
       R2APBS1_3032 A/G-specific DNA-adenine glycosylase
       R2APBS1_1314 endonuclease III
       R2APBS1_0550 S1/P1 Nuclease
       R2APBS1_2765 Zn-finger containing NTP pyrophosphohydrolase
       R2APBS1_3852 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
       R2APBS1_1795 O-6-methylguanine DNA methyltransferase
       R2APBS1_1797 alkylated DNA repair protein
       R2APBS1_1010 G:T/U mismatch-specific DNA glycosylase
       R2APBS1_1798 HhH-GPD superfamily base excision DNA repair protein
       R2APBS1_2351 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
       R2APBS1_3675 DNA-3-methyladenine glycosylase I
       R2APBS1_3555 formamidopyrimidine-DNA glycosylase Fpg
       R2APBS1_3935 Exodeoxyribonuclease III
       R2APBS1_3848 exodeoxyribonuclease III
       R2APBS1_1916 single-stranded DNA-specific exonuclease
       R2APBS1_1641 single-stranded DNA-specific exonuclease
       R2APBS1_1646 single-stranded DNA-specific exonuclease
       R2APBS1_3523 NAD-dependent DNA ligase
       R2APBS1_2141 DNA ligase, NAD-dependent
       R2APBS1_0332 DNA polymerase I
       R2APBS1_2574 Excinuclease ABC subunit A
       R2APBS1_2784 Excinuclease ABC subunit B
       R2APBS1_1617 Excinuclease ABC subunit C
       R2APBS1_0330 DNA/RNA helicase, superfamily I
       R2APBS1_2001 DNA/RNA helicase, superfamily I
       R2APBS1_0971 DNA-directed RNA polymerase subunit beta
       R2APBS1_0972 DNA-directed RNA polymerase subunit beta'
       R2APBS1_1002 DNA-directed RNA polymerase, alpha subunit
       R2APBS1_3353 DNA-directed RNA polymerase subunit omega
       R2APBS1_1278 transcription-repair coupling factor Mfd
       R2APBS1_2635 DNA mismatch repair protein MutS
       R2APBS1_2585 DNA mismatch repair protein MutL
       R2APBS1_2136 exonuclease I
       R2APBS1_2193 Exodeoxyribonuclease VII large subunit
       R2APBS1_1021 Exodeoxyribonuclease VII small subunit
       R2APBS1_1026 DNA-directed DNA polymerase III PolC
       R2APBS1_0002 DNA polymerase III, beta subunit
       R2APBS1_3243 DNA polymerase III, chi subunit
       R2APBS1_1136 DNA polymerase III, delta subunit
       R2APBS1_1455 DNA polymerase III, delta'' subunit
       R2APBS1_2257 DNA polymerase III, epsilon subunit
       R2APBS1_1434 DNA polymerase III, subunit gamma/tau
       R2APBS1_0652 single stranded DNA-binding protein
       R2APBS1_1930 single stranded DNA-binding protein
       R2APBS1_2003 single-stranded DNA-binding protein
       R2APBS1_2344 site-specific DNA methylase
       R2APBS1_2866 site-specific DNA methylase
       R2APBS1_0424 T/G mismatch-specific endonuclease
       R2APBS1_1250 ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing
       R2APBS1_1251 DNA helicase/exodeoxyribonuclease V, gamma subunit
       R2APBS1_1249 DNA helicase/exodeoxyribonuclease V, alpha subunit
       R2APBS1_2633 protein RecA
       R2APBS1_0712 Holliday junction DNA helicase subunit RuvA
       R2APBS1_0714 Holliday junction DNA helicase subunit RuvB
       R2APBS1_0711 Holliday junction endonuclease RuvC
       R2APBS1_3503 replication restart DNA helicase PriA
       R2APBS1_1181 DNA repair protein RadA
       R2APBS1_0003 DNA replication and repair protein RecF
       R2APBS1_1911 RecG-like helicase
       R2APBS1_3350 ATP-dependent DNA helicase RecG
       R2APBS1_2232 DNA replication and repair protein RecO
       R2APBS1_1436 DNA replication and repair protein RecR
       R2APBS1_1826 DNA replication and repair protein RecN
       R2APBS1_1933 DNA recombination-dependent growth factor C
       R2APBS1_3580 DNA recombination-dependent growth factor C
       R2APBS1_1335 putative ATPase
       R2APBS1_0679 DNA polymerase LigD, polymerase domain protein
       R2APBS1_1484 DNA gyrase subunit A
       R2APBS1_0004 DNA gyrase subunit B
       R2APBS1_3690 DNA topoisomerase I, bacterial
       R2APBS1_2265 bacterial nucleoid DNA-binding protein
       R2APBS1_0336 Factor for inversion stimulation Fis, transcriptional activator
       R2APBS1_1053 integration host factor, alpha subunit
       R2APBS1_1810 integration host factor, beta subunit
       R2APBS1_3112 ATP-dependent DNA helicase RecQ
       R2APBS1_0826 DNA-binding protein H-NS
       R2APBS1_0433 DNA-binding protein H-NS
       R2APBS1_3043 DNA-binding protein H-NS
       R2APBS1_3447 nucleotidyltransferase/DNA polymerase involved in DNA repair
       R2APBS1_1657 nucleotidyltransferase/DNA polymerase involved in DNA repair
       R2APBS1_1656 SOS response UmuD protein
       R2APBS1_1874 SOS response transcriptional repressor, RecA-mediated autopeptidase
       R2APBS1_1679 SOS-response transcriptional repressor, LexA
       R2APBS1_1873 hypothetical protein
       R2APBS1_1680 hypothetical protein
       R2APBS1_1872 nucleotidyltransferase/DNA polymerase involved in DNA repair
       R2APBS1_1681 nucleotidyltransferase/DNA polymerase involved in DNA repair
       R2APBS1_1869 DNA-directed DNA polymerase III PolC
       R2APBS1_1682 DNA polymerase III, alpha subunit
       R2APBS1_2632 hypothetical protein
       R2APBS1_3559 DNA/RNA helicase, superfamily I
       R2APBS1_3161 DNA helicase, Rad3
       R2APBS1_3517 DNA helicase, Rad3
       R2APBS1_1972 DNA helicase, Rad3
       R2APBS1_0174 Lhr-like helicase
       R2APBS1_1902 ribonucleotide reductase, alpha subunit
       R2APBS1_1903 ribonucleotide reductase, alpha subunit
       R2APBS1_0415 ribonucleotide reductase, alpha subunit
       R2APBS1_3606 ribonucleoside-diphosphate reductase, alpha subunit
       R2APBS1_1901 hypothetical protein
       R2APBS1_3608 ribonucleotide reductase, beta subunit
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K05986 NUCS; nuclease S1 [EC:3.1.30.1]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K03554 rdgC; recombination associated protein RdgC
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:rhd03029]
 
   09183 Protein families: signaling and cellular processes
 
   09185 Viral protein families
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: March 27, 2024