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09100 Metabolism
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09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:scl03030]
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03410 Base excision repair [PATH:scl03410]
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03420 Nucleotide excision repair [PATH:scl03420]
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03430 Mismatch repair [PATH:scl03430]
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03440 Homologous recombination [PATH:scl03440]
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sce4480 recJ; single-stranded-DNA-specific exonuclease RecJ
sce8612 single-stranded DNA binding protein
sce2625 ssb; ssDNA-binding protein
sce2627 single-strand binding protein
sce8165 recF; RecF protein
sce1679 recO; DNA repair protein RecO (recombination protein O)
sce0257 recR; DNA repair and genetic recombination protein
sce5959 recA2; RecA protein
sce1739 recA recombinase homolog
sce2624 recA1; RecA protein
sce8671 polA1; DNA polymerase I
sce0297 ruvA; holliday junction DNA helicase
sce7216 ruvB; holliday junction DNA helicase
sce5077 ruvC; Holliday Junction Resolvase RuvC
sce6272 Crossover junction endodeoxyribonuclease ruvC
sce7918 recD; putative exodeoxyribonuclease V
sce3750 dnaE2; DNA polymerase III, alpha subunit
sce8164 dnaN; DNA polymerase III beta subunit
sce0259 dnaX; DNA polymerase III subunit Tau
sce5298 holA; putative DNA polymerase III, delta subunit
sce1791 holB; DNA polymerase III delta' subunit
sce1712 exonuclease
sce7572 DNA polymerase III, epsilon subunit
sce7048 priA; primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K03553 recA; recombination protein RecA
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:scl03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:scl03000]
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03021 Transcription machinery [BR:scl03021]
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03019 Messenger RNA biogenesis [BR:scl03019]
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03041 Spliceosome [BR:scl03041]
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03011 Ribosome [BR:scl03011]
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03009 Ribosome biogenesis [BR:scl03009]
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03016 Transfer RNA biogenesis [BR:scl03016]
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03012 Translation factors [BR:scl03012]
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03110 Chaperones and folding catalysts [BR:scl03110]
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04131 Membrane trafficking [BR:scl04131]
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04121 Ubiquitin system [BR:scl04121]
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03051 Proteasome [BR:scl03051]
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03032 DNA replication proteins [BR:scl03032]
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03036 Chromosome and associated proteins [BR:scl03036]
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03400 DNA repair and recombination proteins [BR:scl03400]
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sce0906 methylated-DNA--protein-cysteine methyltransferase
sce6204 O-6-alkylguanine-DNA/cysteine-protein methyltransferase
sce6412 phr; High confidence in function and specificity
sce4747 ung; uracil-DNA glycosylase
sce6176 methylpurine-DNA glycosylase family protein
sce3935 A/G-specific adenine glycosylase
sce3915 nth1; endonuclease III
sce4746 nth2; putative endonuclease III
sce5054 nth3; putative endonuclease III
sce_pseudo_05 pseudogene
sce8529 Nudix/MutT family protein
sce2352 hypothetical protein
sce0295 putative NUDIX hydrolase
sce2316 MutT/nudix family protein, probable
sce1719 ADP-ribose pyrophosphatase
sce4456 mutT; putative mutT/nudix family protein
sce3429 dut; dUTP diphosphatase
sce5098 G/U mismatch-specific DNA glycosylase
sce7637 DNA-directed DNA polymerase
sce2980 hypothetical protein
sce1734 putative DNA polymerase related protein
sce7864 alkA; putative DNA-3-methyladenine glycosidase
sce6205 ada; putative regulatory protein Ada
sce7131 fpgX; DNA-formamidopyrimidine glycosylase
sce8116 xthA; exodeoxyribonuclease III
sce1381 putative nuclease
sce8011 nfo; High confidence in function and specificity
sce4480 recJ; single-stranded-DNA-specific exonuclease RecJ
sce4457 DNA ligase
sce8671 polA1; DNA polymerase I
sce2571 uvrA1; excinuclease ABC subunit A
sce3785 uvrA2; excinuclease ABC subunit A
sce8597 uvrA4; excinuclease ABC subunit A
sce0664 uvrB; excinuclease ABC, B subunit
sce7397 uvrC; excinuclease ABC, subunit C
sce0891 pcrA; ATP-depentend DNA helicase
sce3530 uvrD; ATP-dependent DNA helicase
sce0567 probable uvrD/Rep helicase family protein
sce5957 unnamed protein product; Hypothetical protein
sce0410 rpoB; DNA-directed RNA polymerase
sce0411 rpoC; DNA-directed RNA polymerase, beta' subunit
sce7936 rpoA; DNA-directed RNA polymerase, alpha subunit
sce7258 putative DNA-directed RNA polymerase, omega subunit
sce2633 mfd; transcription-repair coupling factor
sce3129 mutS1; DNA mismatch repair protein
sce7270 mutS3; DNA mismatch repair protein
sce5295 mutS2; DNA mismatch repair protein
sce5049 putative DNA mismatch repair protein
sce9052 mutL; DNA mismatch repair protein MutL
sce3003 mutH; methyl-directed mismatch repair
sce2475 exodeoxyribonuclease VII, large subunit
sce5399 xseA; exodeoxyribonuclease VII, large subunit
sce6489 exodeoxyribonuclease VII small subunit
sce5400 xseB; exodeoxyribonuclease VII small subunit
sce3750 dnaE2; DNA polymerase III, alpha subunit
sce8164 dnaN; DNA polymerase III beta subunit
sce5298 holA; putative DNA polymerase III, delta subunit
sce1791 holB; DNA polymerase III delta' subunit
sce1712 exonuclease
sce7572 DNA polymerase III, epsilon subunit
sce0259 dnaX; DNA polymerase III subunit Tau
sce8612 single-stranded DNA binding protein
sce2625 ssb; ssDNA-binding protein
sce2627 single-strand binding protein
sce2777 dam; site-specific DNA-methyltransferase
sce7918 recD; putative exodeoxyribonuclease V
sce5959 recA2; RecA protein
sce1739 recA recombinase homolog
sce2624 recA1; RecA protein
sce0297 ruvA; holliday junction DNA helicase
sce7216 ruvB; holliday junction DNA helicase
sce5077 ruvC; Holliday Junction Resolvase RuvC
sce6272 Crossover junction endodeoxyribonuclease ruvC
sce7048 priA; primosomal protein N'
sce8165 recF; RecF protein
sce1679 recO; DNA repair protein RecO (recombination protein O)
sce0257 recR; DNA repair and genetic recombination protein
sce1067 recN; recombination protein N
sce7338 Hypothetical protein
sce0269 hypothetical protein
sce9176 hypothetical protein
sce2664 hypothetical protein
sce3523 unnamed protein product; High confidence in function and specificity
sce3724 gyrA; DNA gyrase subunit A
sce4451 DNA gyrase subunit A
sce4452 gyrB; DNA gyrase subunit B
sce8166 DNA gyrase subunit B
sce5115 topA; DNA topoisomerase I
sce1161 topI; DNA topoisomerase, type I, putative
sce8278 histone-like protein
sce8609 himA; integration host factor alpha-subunit
sce0510 ihfB; integration host factor beta-subunit
sce2885 recQ; ATP-dependent DNA helicase RecQ
sce1364 dinP; DNA polymerase IV
sce4469 lexA; LexA repressor
sce5497 polB; DNA-directed DNA polymerase
sce1740 hypothetical protein predicted by Glimmer/Critica
sce1741 dnaE1; DNA polymerase III, alpha subunit
sce0207 hypothetical protein
sce8781 DNA polymerase lambda
sce7600 ATP-dependent DNA helicase.
sce2970 yoaA; ATP-dependent helicase
sce2802 lhr1; putative ATP-dependent helicase, N-terminal fragment
sce7687 ATP-dependent helicase
sce3970 lhr2; putative ATP-dependent helicase
sce3875 nrdA2; Ribonucleoside-diphosphate reductase
sce0379 nrdA1; putative Ribonucleoside-diphosphate reductase
sce3876 nrdB; Ribonucleotide-diphosphate reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03553 recA; recombination protein RecA
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:scl03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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