KEGG Orthology (KO) - Shewanella denitrificans

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     KO
 09100 Metabolism
 
   09101 Carbohydrate metabolism
 
   09102 Energy metabolism
 
   09103 Lipid metabolism
 
   09104 Nucleotide metabolism
 
   09105 Amino acid metabolism
     00250 Alanine, aspartate and glutamate metabolism [PATH:sdn00250]
     00260 Glycine, serine and threonine metabolism [PATH:sdn00260]
     00270 Cysteine and methionine metabolism [PATH:sdn00270]
     00280 Valine, leucine and isoleucine degradation [PATH:sdn00280]
     00290 Valine, leucine and isoleucine biosynthesis [PATH:sdn00290]
     00300 Lysine biosynthesis [PATH:sdn00300]
       Sden_2982 aspartate kinase
       Sden_2740 homoserine dehydrogenase / aspartate kinase
       Sden_0616 homoserine dehydrogenase / aspartate kinase
       Sden_1484 aspartate semialdehyde dehydrogenase
       Sden_1735 dihydrodipicolinate synthase
       Sden_0994 dihydrodipicolinate reductase
       Sden_1551 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
       Sden_3193 acetylornithine aminotransferase
       Sden_1054 acetylornithine aminotransferase
       Sden_1814 succinyldiaminopimelate desuccinylase
       Sden_0391 diaminopimelate epimerase
       Sden_0390 diaminopimelate decarboxylase
       Sden_0350 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
       Sden_0351 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
K00928 lysC; aspartate kinase [EC:2.7.2.4]
K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
     00310 Lysine degradation [PATH:sdn00310]
     00220 Arginine biosynthesis [PATH:sdn00220]
     00330 Arginine and proline metabolism [PATH:sdn00330]
     00340 Histidine metabolism [PATH:sdn00340]
     00350 Tyrosine metabolism [PATH:sdn00350]
     00360 Phenylalanine metabolism [PATH:sdn00360]
     00380 Tryptophan metabolism [PATH:sdn00380]
     00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:sdn00400]
 
   09106 Metabolism of other amino acids
 
   09107 Glycan biosynthesis and metabolism
     00510 N-Glycan biosynthesis
     00513 Various types of N-glycan biosynthesis
     00512 Mucin type O-glycan biosynthesis
     00515 Mannose type O-glycan biosynthesis
     00514 Other types of O-glycan biosynthesis
     00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
     00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
     00533 Glycosaminoglycan biosynthesis - keratan sulfate
     00531 Glycosaminoglycan degradation
     00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
     00601 Glycosphingolipid biosynthesis - lacto and neolacto series
     00603 Glycosphingolipid biosynthesis - globo and isoglobo series
     00604 Glycosphingolipid biosynthesis - ganglio series
     00511 Other glycan degradation [PATH:sdn00511]
     00540 Lipopolysaccharide biosynthesis [PATH:sdn00540]
     00542 O-Antigen repeat unit biosynthesis
     00541 O-Antigen nucleotide sugar biosynthesis [PATH:sdn00541]
     00550 Peptidoglycan biosynthesis [PATH:sdn00550]
       Sden_0502 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
       Sden_0153 UDP-N-acetylmuramate dehydrogenase
       Sden_0356 UDP-N-acetylmuramate--L-alanine ligase
       Sden_0353 UDP-N-acetylmuramoylalanine--D-glutamate ligase
       Sden_0350 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
       Sden_2354 D-alanine--D-alanine ligase
       Sden_0351 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
       Sden_1558 Undecaprenyl pyrophosphate synthetase
       Sden_2826 Undecaprenyl-diphosphatase
       Sden_0465 phosphoesterase, PA-phosphatase related
       Sden_0352 Phospho-N-acetylmuramoyl-pentapeptide-transferase
       Sden_0355 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
       Sden_1156 Monofunctional biosynthetic peptidoglycan transglycosylase
       Sden_0255 Penicillin-binding protein 1A
       Sden_3164 Penicillin-binding protein 1B
       Sden_0855 peptidoglycan glycosyltransferase
       Sden_0349 peptidoglycan synthetase FtsI
       Sden_0851 penicillin-binding protein 6. Serine peptidase. MEROPS family S11
       Sden_1778 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
     00552 Teichoic acid biosynthesis [PATH:sdn00552]
     00571 Lipoarabinomannan (LAM) biosynthesis
     00572 Arabinogalactan biosynthesis - Mycobacterium
     00543 Exopolysaccharide biosynthesis [PATH:sdn00543]
 
   09108 Metabolism of cofactors and vitamins
 
   09109 Metabolism of terpenoids and polyketides
 
   09110 Biosynthesis of other secondary metabolites
 
   09111 Xenobiotics biodegradation and metabolism
 
   09112 Not included in regular maps
 
 09120 Genetic Information Processing
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
     01000 Enzymes [BR:sdn01000]
     01001 Protein kinases [BR:sdn01001]
     01009 Protein phosphatases and associated proteins [BR:sdn01009]
     01002 Peptidases and inhibitors [BR:sdn01002]
     01003 Glycosyltransferases [BR:sdn01003]
     01005 Lipopolysaccharide biosynthesis proteins [BR:sdn01005]
     01011 Peptidoglycan biosynthesis and degradation proteins [BR:sdn01011]
       Sden_0502 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
       Sden_0153 UDP-N-acetylmuramate dehydrogenase
       Sden_0356 UDP-N-acetylmuramate--L-alanine ligase
       Sden_0353 UDP-N-acetylmuramoylalanine--D-glutamate ligase
       Sden_0350 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
       Sden_2354 D-alanine--D-alanine ligase
       Sden_0522 alanine racemase
       Sden_0232 glutamate racemase
       Sden_0352 Phospho-N-acetylmuramoyl-pentapeptide-transferase
       Sden_0355 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
       Sden_2826 Undecaprenyl-diphosphatase
       Sden_0465 phosphoesterase, PA-phosphatase related
       Sden_2725 integral membrane protein MviN
       Sden_0255 Penicillin-binding protein 1A
       Sden_3164 Penicillin-binding protein 1B
       Sden_0855 peptidoglycan glycosyltransferase
       Sden_0349 peptidoglycan synthetase FtsI
       Sden_0851 penicillin-binding protein 6. Serine peptidase. MEROPS family S11
       Sden_1778 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
       Sden_1095 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
       Sden_1156 Monofunctional biosynthetic peptidoglycan transglycosylase
       Sden_0707 ErfK/YbiS/YcfS/YnhG
       Sden_1501 Peptidoglycan-binding domain 1
       Sden_2504 peptidase M23B
       Sden_2347 Lytic transglycosylase, catalytic
       Sden_0853 Lytic murein transglycosylase B
       Sden_2141 Lytic murein transglycosylase
       Sden_1631 membrane-bound lytic murein transglycosylase B
       Sden_2022 Lytic transglycosylase, catalytic
       Sden_1857 Lytic transglycosylase, catalytic
       Sden_1272 Lytic transglycosylase, catalytic
       Sden_2052 aminodeoxychorismate lyase
       Sden_0852 rare lipoprotein A
       Sden_3208 N-acetylmuramoyl-L-alanine amidase
       Sden_3386 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
       Sden_2824 major outer membrane lipoprotein, putative
K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
K01775 alr; alanine racemase [EC:5.1.1.1]
K01776 murI; glutamate racemase [EC:5.1.1.3]
K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
K03980 murJ; putative peptidoglycan lipid II flippase
K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
K19235 ybiS; L,D-transpeptidase YbiS
K21470 ycbB; L,D-transpeptidase YcbB
K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
K06078 lpp; murein lipoprotein
     01004 Lipid biosynthesis proteins [BR:sdn01004]
     01008 Polyketide biosynthesis proteins [BR:sdn01008]
     01006 Prenyltransferases [BR:sdn01006]
     01007 Amino acid related enzymes [BR:sdn01007]
     00199 Cytochrome P450
     00194 Photosynthesis proteins [BR:sdn00194]
 
   09182 Protein families: genetic information processing
 
   09183 Protein families: signaling and cellular processes
 
   09185 Viral protein families
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: March 16, 2024