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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:sea03030]
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03410 Base excision repair [PATH:sea03410]
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03420 Nucleotide excision repair [PATH:sea03420]
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03430 Mismatch repair [PATH:sea03430]
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03440 Homologous recombination [PATH:sea03440]
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 SeAg_B3198 recJ; single-stranded-DNA-specific exonuclease RecJ
SeAg_B4512 ssb; single-stranded DNA-binding protein
SeAg_B4064 DNA replication and repair protein RecF
SeAg_B2741 recO; DNA repair protein RecO
SeAg_B0531 recR; recombination protein RecR
SeAg_B2948 recA; protein RecA
SeAg_B4231 DNA polymerase I
SeAg_B1229 ruvA; Holliday junction DNA helicase RuvA
SeAg_B1230 ruvB; holliday junction DNA helicase RuvB
SeAg_B1225 ruvC; crossover junction endodeoxyribonuclease RuvC
SeAg_B3961 recG; ATP-dependent DNA helicase RecG
SeAg_B3140 recB; exodeoxyribonuclease V, beta subunit
SeAg_B3142 recC; exodeoxyribonuclease V, gamma subunit
SeAg_B3139 recD; exodeoxyribonuclease V, alpha subunit
SeAg_B0272 dnaE; DNA polymerase III, alpha subunit
SeAg_B4065 dnaN; DNA polymerase III, beta subunit
SeAg_B0528 dnaX; DNA polymerase III, tau subunit
SeAg_B0689 holA; DNA polymerase III, delta subunit
SeAg_B1985 DNA polymerase III subunit delta'
SeAg_B0308 dnaQ; DNA polymerase III, epsilon subunit
SeAg_B1248 conserved domain protein
SeAg_B4762 holC; DNA polymerase III, chi subunit
SeAg_B4878 holD; DNA polymerase III, psi subunit
SeAg_B4341 primosomal protein N'
SeAg_B4670 priB; primosomal replication protein N
SeAg_B0522 primosomal replication protein N''
SeAg_B4865 primosomal protein 1
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:sea03000]
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03021 Transcription machinery [BR:sea03021]
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03019 Messenger RNA biogenesis [BR:sea03019]
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03041 Spliceosome
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03011 Ribosome [BR:sea03011]
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03009 Ribosome biogenesis [BR:sea03009]
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03016 Transfer RNA biogenesis [BR:sea03016]
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03012 Translation factors [BR:sea03012]
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03110 Chaperones and folding catalysts [BR:sea03110]
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04131 Membrane trafficking [BR:sea04131]
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04121 Ubiquitin system [BR:sea04121]
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03051 Proteasome [BR:sea03051]
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03032 DNA replication proteins [BR:sea03032]
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03036 Chromosome and associated proteins [BR:sea03036]
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03400 DNA repair and recombination proteins [BR:sea03400]
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SeAg_B1492 methylated-dna--protein-cysteine methyltransferase
SeAg_B0756 deoxyribodipyrimidine photo-lyase
SeAg_B2757 ung; uracil-DNA glycosylase
SeAg_B3274 mutY; A/G-specific adenine glycosylase
SeAg_B1721 nth; endonuclease III
SeAg_B0154 mutator MutT protein
SeAg_B3948 dut; dUTP diphosphatase
SeAg_B2401 regulatory protein ada
SeAg_B2400 alpha-ketoglutarate-dependent dioxygenase AlkB
SeAg_B3398 G/U mismatch-specific DNA glycosylase
SeAg_B2252 dna-3-methyladenine glycosylase 2
SeAg_B3856 dna-3-methyladenine glycosylase 1
SeAg_B3943 mutM; formamidopyrimidine-DNA glycosylase
SeAg_B0762 endonuclease VIII
SeAg_B1873 xth; exodeoxyribonuclease III
SeAg_B2351 endonuclease 4
SeAg_B4412 nfi; endonuclease V
SeAg_B3198 recJ; single-stranded-DNA-specific exonuclease RecJ
SeAg_B2571 ligA; DNA ligase, NAD-dependent
SeAg_B3956 ligA; NAD-dependent DNA ligase adenylation domain protein
SeAg_B4231 DNA polymerase I
SeAg_B4511 uvrA; excinuclease ABC, A subunit
SeAg_B0834 uvrB; excinuclease ABC, B subunit
SeAg_B1174 uvrC; excinuclease ABC, C subunit
SeAg_B1863 GIY-YIG catalytic domain protein
SeAg_B4180 uvrD; DNA helicase II
SeAg_B4396 rpoB; DNA-directed RNA polymerase, beta subunit
SeAg_B4397 rpoC; DNA-directed RNA polymerase, beta' subunit
SeAg_B3610 rpoA; DNA-directed RNA polymerase, alpha subunit
SeAg_B3958 rpoZ; DNA-directed RNA polymerase, omega subunit
SeAg_B1969 mfd; transcription-repair coupling factor
SeAg_B3030 mutS; DNA mismatch repair protein MutS
SeAg_B4637 DNA mismatch repair protein MutL
SeAg_B3152 mutH; DNA mismatch repair endonuclease MutH
SeAg_B2191 exodeoxyribonuclease I
SeAg_B2661 xseA; exodeoxyribonuclease VII, large subunit
SeAg_B0463 xseB; exodeoxyribonuclease VII, small subunit
SeAg_B1246 exodeoxyribonuclease 10
SeAg_B0272 dnaE; DNA polymerase III, alpha subunit
SeAg_B4065 dnaN; DNA polymerase III, beta subunit
SeAg_B4762 holC; DNA polymerase III, chi subunit
SeAg_B0689 holA; DNA polymerase III, delta subunit
SeAg_B1985 DNA polymerase III subunit delta'
SeAg_B0308 dnaQ; DNA polymerase III, epsilon subunit
SeAg_B0528 dnaX; DNA polymerase III, tau subunit
SeAg_B4878 holD; DNA polymerase III, psi subunit
SeAg_B1248 conserved domain protein
SeAg_B4512 ssb; single-stranded DNA-binding protein
SeAg_B3683 dam; DNA adenine methylase
SeAg_B2876 retron EC67 DNA adenine methylase
SeAg_B1128 very short patch repair protein
SeAg_B3140 recB; exodeoxyribonuclease V, beta subunit
SeAg_B3142 recC; exodeoxyribonuclease V, gamma subunit
SeAg_B3139 recD; exodeoxyribonuclease V, alpha subunit
SeAg_B2948 recA; protein RecA
SeAg_B1229 ruvA; Holliday junction DNA helicase RuvA
SeAg_B1230 ruvB; holliday junction DNA helicase RuvB
SeAg_B1225 ruvC; crossover junction endodeoxyribonuclease RuvC
SeAg_B4341 primosomal protein N'
SeAg_B4670 priB; primosomal replication protein N
SeAg_B0522 primosomal replication protein N''
SeAg_B4865 primosomal protein 1
SeAg_B0432 exonuclease SbcC
SeAg_B0433 ATP-dependent dsDNA exonuclease
SeAg_B4903 radA; DNA repair protein RadA
SeAg_B4064 DNA replication and repair protein RecF
SeAg_B3961 recG; ATP-dependent DNA helicase RecG
SeAg_B2741 recO; DNA repair protein RecO
SeAg_B0531 recR; recombination protein RecR
SeAg_B2829 recN; DNA repair protein RecN
SeAg_B0429 rdgC; recombination-associated exonuclease RdgC
SeAg_B3066 cas1; CRISPR-associated protein Cas1
SeAg_B2372 putative helicase
SeAg_B2408 gyrA; DNA gyrase, A subunit
SeAg_B4063 gyrB; DNA gyrase, B subunit
SeAg_B1432 topA; DNA topoisomerase I
SeAg_B4414 hupA; DNA-binding protein HU-alpha
SeAg_B0491 hupB; DNA-binding protein HU-beta
SeAg_B3576 fis; DNA-binding protein Fis
SeAg_B1834 ihfA; integration host factor, alpha subunit
SeAg_B0988 ihfB; integration host factor, beta subunit
SeAg_B4187 recQ; ATP-dependent DNA helicase RecQ
SeAg_B1394 hns; DNA-binding protein H-NS
SeAg_B0347 DNA polymerase IV
SeAg_B4494 lexA; LexA repressor
SeAg_B2026 DNA damage-inducible protein I, inhibits UmuD processing
SeAg_B2947 recX; regulatory protein RecX
SeAg_B3710 conserved hypothetical protein
SeAg_B4139 rep; ATP-dependent DNA helicase Rep
SeAg_B1033 helicase IV
SeAg_B0857 probable ATP-dependent helicase DinG
SeAg_B1310 conserved hypothetical protein
SeAg_B2924 ribonucleoside-diphosphate reductase, alpha subunit
SeAg_B2413 nrdA; ribonucleoside-diphosphate reductase, alpha subunit
SeAg_B2925 ribonucleoside-diphosphate reductase, beta subunit
SeAg_B2414 nrdB; ribonucleoside-diphosphate reductase, beta subunit
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:sea03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Salmonella enterica subsp. enterica serovar Agona SL483