09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:seec03030]
03410 Base excision repair [PATH:seec03410]
CFSAN002050_13660 endonuclease IV CFSAN002050_19915 uracil-DNA glycosylase CFSAN002050_21905 adenine DNA glycosylase CFSAN002050_01550 5-hydroxymethyluracil DNA glycosylase CFSAN002050_10195 endoribonuclease SymE CFSAN002050_17555 3-methyl-adenine DNA glycosylase CFSAN002050_25180 DNA-3-methyladenine glycosylase CFSAN002050_23050 DNA glycosylase CFSAN002050_12910 exonuclease III CFSAN002050_18020 endonuclease V CFSAN002050_02875 DNA polymerase I CFSAN002050_21560 ssDNA exonuclease RecJ CFSAN002050_01615 DNA ligase CFSAN002050_19075 ligA; NAD-dependent DNA ligase LigA
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
03420 Nucleotide excision repair [PATH:seec03420]
03430 Mismatch repair [PATH:seec03430]
03440 Homologous recombination [PATH:seec03440]
03450 Non-homologous end-joining
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:seec03000]
03021 Transcription machinery [BR:seec03021]
03019 Messenger RNA biogenesis [BR:seec03019]
03041 Spliceosome
03011 Ribosome [BR:seec03011]
03009 Ribosome biogenesis [BR:seec03009]
03016 Transfer RNA biogenesis [BR:seec03016]
03012 Translation factors [BR:seec03012]
03110 Chaperones and folding catalysts [BR:seec03110]
04131 Membrane trafficking [BR:seec04131]
04121 Ubiquitin system [BR:seec04121]
03051 Proteasome [BR:seec03051]
03032 DNA replication proteins [BR:seec03032]
03036 Chromosome and associated proteins [BR:seec03036]
03400 DNA repair and recombination proteins [BR:seec03400]
CFSAN002050_14720 methylated-DNA--protein-cysteine methyltransferase CFSAN002050_10165 deoxyribodipyrimidine photolyase CFSAN002050_19915 uracil-DNA glycosylase CFSAN002050_21905 adenine DNA glycosylase CFSAN002050_13660 endonuclease IV CFSAN002050_07130 nucleoside triphosphate pyrophosphohydrolase CFSAN002050_01575 deoxyuridine 5'-triphosphate nucleotidohydrolase CFSAN002050_18255 transcriptional regulator CFSAN002050_18250 alpha-ketoglutarate-dependent dioxygenase CFSAN002050_23050 DNA glycosylase CFSAN002050_17555 3-methyl-adenine DNA glycosylase CFSAN002050_25180 DNA-3-methyladenine glycosylase CFSAN002050_01550 5-hydroxymethyluracil DNA glycosylase CFSAN002050_10195 endoribonuclease SymE CFSAN002050_12910 exonuclease III CFSAN002050_18020 endonuclease V CFSAN002050_03655 endonuclease VIII CFSAN002050_21560 ssDNA exonuclease RecJ CFSAN002050_01615 DNA ligase CFSAN002050_19075 ligA; NAD-dependent DNA ligase LigA CFSAN002050_02875 DNA polymerase I CFSAN002050_04505 excinuclease ABC subunit A CFSAN002050_10545 excinuclease ABC subunit B CFSAN002050_16545 uvrC; excinuclease ABC subunit C CFSAN002050_12945 nucleotide excision repair endonuclease CFSAN002050_02640 uvrD; DNA-dependent helicase CFSAN002050_03590 rpoB; DNA-directed RNA polymerase subunit beta CFSAN002050_03595 DNA-directed RNA polymerase subunit beta' CFSAN002050_24045 DNA-directed RNA polymerase subunit alpha CFSAN002050_01625 rpoZ; DNA-directed RNA polymerase subunit omega CFSAN002050_12470 ATP-dependent DNA helicase RecG CFSAN002050_20860 DNA mismatch repair protein MutS CFSAN002050_05205 DNA mismatch repair protein CFSAN002050_21385 DNA mismatch repair protein CFSAN002050_17295 sbcB; exonuclease I CFSAN002050_19510 xseA; exodeoxyribonuclease VII large subunit CFSAN002050_08720 exodeoxyribonuclease VII small subunit CFSAN002050_15855 exodeoxyribonuclease X CFSAN002050_07695 dnaE; DNA polymerase III subunit alpha CFSAN002050_02080 DNA polymerase III subunit beta CFSAN002050_05795 DNA polymerase III subunit chi CFSAN002050_09845 holA; DNA polymerase III subunit delta CFSAN002050_12395 DNA polymerase III subunit delta' CFSAN002050_07860 DNA polymerase III subunit epsilon CFSAN002050_09025 DNA polymerase III subunits gamma and tau CFSAN002050_06270 DNA polymerase III subunit psi CFSAN002050_15845 DNA polymerase III subunit theta CFSAN002050_04510 single-stranded DNA-binding protein CFSAN002050_04105 single-stranded DNA-binding protein CFSAN002050_22380 single-stranded DNA-binding protein CFSAN002050_16275 single-stranded DNA-binding protein CFSAN002050_00235 DNA modification methylase CFSAN002050_24380 DNA adenine methylase CFSAN002050_16765 very short patch repair endonuclease CFSAN002050_17000 Fis family transcriptional regulator CFSAN002050_21325 recB; exonuclease V subunit beta CFSAN002050_21335 recC; exonuclease V subunit gamma CFSAN002050_21320 recD; exonuclease V subunit alpha CFSAN002050_20440 recA; recombinase RecA CFSAN002050_15945 ruvA; Holliday junction DNA helicase RuvA CFSAN002050_15940 ruvB; Holliday junction DNA helicase RuvB CFSAN002050_15960 ruvC; Holliday junction resolvase CFSAN002050_03315 primosome assembly protein PriA CFSAN002050_05365 primosomal replication protein N CFSAN002050_09010 primosomal replication protein N'' CFSAN002050_06205 primosomal protein DnaI CFSAN002050_08570 exonuclease subunit SbcC CFSAN002050_08575 exonuclease subunit SbcD CFSAN002050_06380 DNA repair protein RadA CFSAN002050_02075 recF; recombinase F CFSAN002050_01640 ATP-dependent DNA helicase RecG CFSAN002050_19840 recO; DNA repair protein RecO CFSAN002050_09035 recR; recombinase RecR CFSAN002050_20085 recombinase CFSAN002050_08555 rdgC; recombinase CFSAN002050_21005 CRISPR-associated protein Cas1 CFSAN002050_18115 hypothetical protein CFSAN002050_18285 DNA gyrase subunit A CFSAN002050_02070 gyrB; DNA gyrase subunit B CFSAN002050_15040 topoisomerase I CFSAN002050_03665 transcriptional regulator CFSAN002050_08865 transcriptional regulator CFSAN002050_11390 exodeoxyribonuclease CFSAN002050_23895 fis; Fis family transcriptional regulator CFSAN002050_13085 ihfA; integration host factor subunit alpha CFSAN002050_11255 ihfB; integration host factor subunit beta CFSAN002050_02670 ATP-dependent DNA helicase RecQ CFSAN002050_15220 DNA-binding protein CFSAN002050_08165 DNA polymerase IV CFSAN002050_22155 DNA polymerase V subunit UmuC CFSAN002050_22160 DNA polymerase V subunit UmuC CFSAN002050_00830 DNA polymerase V subunit UmuC CFSAN002050_15995 DNA polymerase V subunit UmuC CFSAN002050_16795 DNA polymerase V subunit UmuC CFSAN002050_22230 DNA polymerase V CFSAN002050_22165 umuDC operon protein-like protein CFSAN002050_04440 DNA repair protein CFSAN002050_16800 umuDC operon protein-like protein CFSAN002050_16000 umuDC operon protein-like protein CFSAN002050_00835 umuDC operon protein-like protein CFSAN002050_04015 LexA repressor CFSAN002050_06935 DNA polymerase II CFSAN002050_12200 DNA damage-inducible protein I CFSAN002050_11450 DNA damage-inducible protein I CFSAN002050_20435 recX; recombination protein RecX CFSAN002050_24500 hypothetical protein CFSAN002050_02445 ATP-dependent DNA helicase Rep CFSAN002050_11765 helD; DNA helicase IV CFSAN002050_10685 dinG; ATP-dependent DNA helicase DinG CFSAN002050_15585 ATP-dependent helicase CFSAN002050_22505 DEAD/DEAH box helicase CFSAN002050_18310 ribonucleotide-diphosphate reductase subunit alpha CFSAN002050_18315 ribonucleotide-diphosphate reductase subunit beta CFSAN002050_20335 ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K05984 cho; excinuclease Cho [EC:3.1.25.-] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K03573 mutH; DNA mismatch repair protein MutH K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] K06223 dam; DNA adenine methylase [EC:2.1.1.72] K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K02686 priB; primosomal replication protein N K04067 priC; primosomal replication protein N'' K02317 dnaT; DNA replication protein DnaT K03546 sbcC; DNA repair protein SbcC/Rad50 K03547 sbcD; DNA repair protein SbcD/Mre11 K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K03554 rdgC; recombination associated protein RdgC K15342 cas1; CRISP-associated protein Cas1 K19789 radD; DNA repair protein RadD K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K05787 hupA; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-] K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K03746 hns; DNA-binding protein H-NS K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K03502 umuC; DNA polymerase V K03502 umuC; DNA polymerase V K03502 umuC; DNA polymerase V K03502 umuC; DNA polymerase V K03502 umuC; DNA polymerase V K03503 umuD; DNA polymerase V [EC:3.4.21.-] K03503 umuD; DNA polymerase V [EC:3.4.21.-] K03503 umuD; DNA polymerase V [EC:3.4.21.-] K03503 umuD; DNA polymerase V [EC:3.4.21.-] K03503 umuD; DNA polymerase V [EC:3.4.21.-] K03503 umuD; DNA polymerase V [EC:3.4.21.-] K01356 lexA; repressor LexA [EC:3.4.21.88] K02336 polB; DNA polymerase II [EC:2.7.7.7] K12149 dinI; DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I K03565 recX; regulatory protein K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-] K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] K03658 helD; DNA helicase IV [EC:5.6.2.4] K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:seec03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Salmonella enterica subsp. enterica serovar Cubana KEGG Orthology (KO) - Salmonella enterica subsp. enterica serovar Cubana