KEGG Orthology (KO) - Shewanella putrefaciens 200

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:shp03030]
     03410 Base excision repair [PATH:shp03410]
       Sput200_2148 endonuclease III
       Sput200_0976 uracil-DNA glycosylase
       Sput200_2837 A/G-specific adenine glycosylase
       Sput200_0069 formamidopyrimidine-DNA glycosylase
       Sput200_2521 transcriptional regulator, AraC family
       Sput200_0008 DNA-3-methyladenine glycosylase I
       Sput200_2446 exodeoxyribonuclease III
       Sput200_0045 DNA polymerase I
       Sput200_0889 single-stranded-DNA-specific exonuclease RecJ
       Sput200_2389 DNA ligase, NAD-dependent
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
     03420 Nucleotide excision repair [PATH:shp03420]
     03430 Mismatch repair [PATH:shp03430]
     03440 Homologous recombination [PATH:shp03440]
     03450 Non-homologous end-joining
     03460 Fanconi anemia pathway
 
   09126 Chromosome
 
   09125 Information processing in viruses
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:shp03000]
     03021 Transcription machinery [BR:shp03021]
     03019 Messenger RNA biogenesis [BR:shp03019]
     03041 Spliceosome
     03011 Ribosome [BR:shp03011]
     03009 Ribosome biogenesis [BR:shp03009]
     03016 Transfer RNA biogenesis [BR:shp03016]
     03012 Translation factors [BR:shp03012]
     03110 Chaperones and folding catalysts [BR:shp03110]
     04131 Membrane trafficking [BR:shp04131]
     04121 Ubiquitin system [BR:shp04121]
     03051 Proteasome [BR:shp03051]
     03032 DNA replication proteins [BR:shp03032]
     03036 Chromosome and associated proteins [BR:shp03036]
     03400 DNA repair and recombination proteins [BR:shp03400]
       Sput200_2520 methylated-DNA/protein-cysteine methyltransferase
       Sput200_2851 Deoxyribodipyrimidine photo-lyase
       Sput200_0976 uracil-DNA glycosylase
       Sput200_2837 A/G-specific adenine glycosylase
       Sput200_2148 endonuclease III
       Sput200_3633 ERCC4 domain protein
       Sput200_3508 NUDIX hydrolase
       Sput200_3567 mutator MutT protein
       Sput200_2354 transcriptional regulator for NAD metabolism, NrtR
       Sput200_0328 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
       Sput200_0449 deoxyribodipyrimidine photolyase-related protein
       Sput200_2521 transcriptional regulator, AraC family
       Sput200_0008 DNA-3-methyladenine glycosylase I
       Sput200_0069 formamidopyrimidine-DNA glycosylase
       Sput200_2446 exodeoxyribonuclease III
       Sput200_0889 single-stranded-DNA-specific exonuclease RecJ
       Sput200_2389 DNA ligase, NAD-dependent
       Sput200_0045 DNA polymerase I
       Sput200_2523 GTPase EngC
       Sput200_0569 excinuclease ABC, A subunit
       Sput200_2140 excinuclease ABC, B subunit
       Sput200_1659 excinuclease ABC, C subunit
       Sput200_0759 UvrD/REP helicase
       Sput200_3502 DNA helicase II
       Sput200_0158 DNA-directed RNA polymerase, beta subunit
       Sput200_0159 DNA-directed RNA polymerase, beta' subunit
       Sput200_0190 DNA-directed RNA polymerase, alpha subunit
       Sput200_3643 DNA-directed RNA polymerase, omega subunit
       Sput200_1850 transcription-repair coupling factor
       Sput200_2886 DNA mismatch repair protein MutS
       Sput200_3409 DNA mismatch repair protein MutL
       Sput200_1146 DNA mismatch repair endonuclease mutH
       Sput200_1586 Exodeoxyribonuclease I
       Sput200_2788 exodeoxyribonuclease VII, large subunit
       Sput200_1283 exodeoxyribonuclease VII, small subunit
       Sput200_1373 DNA polymerase III, alpha subunit
       Sput200_0002 DNA polymerase III, beta subunit
       Sput200_2879 DNA polymerase III chi subunit HolC
       Sput200_3009 DNA polymerase III, delta subunit
       Sput200_2236 DNA polymerase III, delta prime subunit
       Sput200_1896 DNA polymerase III, epsilon subunit
       Sput200_2381 Exonuclease RNase T and DNA polymerase III
       Sput200_1815 DNA polymerase III, epsilon subunit
       Sput200_2328 DNA polymerase III, subunits gamma and tau
       Sput200_0571 single-strand binding protein
       Sput200_3786 single-strand binding protein/Primosomal replication protein n
       Sput200_4015 DNA adenine methylase
       Sput200_1899 exodeoxyribonuclease V, beta subunit
       Sput200_1900 exodeoxyribonuclease V, gamma subunit
       Sput200_1898 exodeoxyribonuclease V, alpha subunit
       Sput200_2885 recA protein
       Sput200_2052 Holliday junction DNA helicase RuvA
       Sput200_2051 Holliday junction DNA helicase RuvB
       Sput200_2053 crossover junction endodeoxyribonuclease RuvC
       Sput200_0476 primosomal protein N'
       Sput200_0683 single-strand binding protein/Primosomal replication protein n
       Sput200_1524 primosomal replication protein N'', putative
       Sput200_1549 dsDNA exonuclease, SbcC
       Sput200_1548 nuclease SbcCD, D subunit
       Sput200_2956 DNA repair protein RadA
       Sput200_0003 DNA replication and repair protein RecF
       Sput200_0316 ATP-dependent DNA helicase RecG
       Sput200_1166 DNA repair protein RecO
       Sput200_2326 recombination protein RecR
       Sput200_2909 DNA repair protein RecN
       Sput200_1300 putative exonuclease RdgC
       Sput200_2173 CRISPR-associated protein Cas1
       Sput200_2376 type III restriction protein res subunit
       Sput200_3509 protein of unknown function DUF853 NPT hydrolase putative
       Sput200_1940 DNA gyrase, A subunit
       Sput200_0004 DNA gyrase, B subunit
       Sput200_2273 DNA topoisomerase I
       Sput200_1505 histone family protein DNA-binding protein
       Sput200_3452 histone family protein DNA-binding protein
       Sput200_3582 transcriptional regulator, Fis family
       Sput200_2162 integration host factor, alpha subunit
       Sput200_1969 integration host factor, beta subunit
       Sput200_1985 ATP-dependent DNA helicase, RecQ family
       Sput200_0337 ATP-dependent DNA helicase RecQ
       Sput200_2541 histone family protein nucleoid-structuring protein H-NS
       Sput200_3873 histone family protein nucleoid-structuring protein H-NS
       Sput200_0948 DNA-directed DNA polymerase
       Sput200_0752 DNA polymerase V subunit, UmuC
       Sput200_3884 UMUC domain protein DNA-repair protein
       Sput200_0753 DNA polymerase V subunit, UmuD
       Sput200_3883 DNA polymerase V subunit, UmuD
       Sput200_0144 transcriptional repressor, LexA family
       Sput200_1527 DNA polymerase B region
       Sput200_2884 regulatory protein RecX
       Sput200_3612 ATP-dependent DNA helicase Rep
       Sput200_2168 helicase c2
       Sput200_1526 helicase c2
       Sput200_1937 ribonucleoside-diphosphate reductase, alpha subunit
       Sput200_1936 ribonucleotide reductase
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:shp03029]
 
   09183 Protein families: signaling and cellular processes
 
   09185 Viral protein families
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: April 22, 2024