|
KO |
09100 Metabolism
|
|
|
09120 Genetic Information Processing
|
|
|
09121 Transcription
|
|
|
09122 Translation
|
|
|
09123 Folding, sorting and degradation
|
|
|
09124 Replication and repair
|
03030 DNA replication [PATH:sif03030]
|
03410 Base excision repair [PATH:sif03410]
|
03420 Nucleotide excision repair [PATH:sif03420]
|
03430 Mismatch repair [PATH:sif03430]
|
03440 Homologous recombination [PATH:sif03440]
|
Sinf_0638 recJ; single-stranded-DNA-specific exonuclease RecJ
Sinf_0116 ssbB; single-strand DNA-binding protein
Sinf_1635 ssbA; single-strand DNA-binding protein
Sinf_1797 Single-stranded DNA-binding protein
Sinf_1953 recF; recombination protein RecF
Sinf_0023 recO; DNA repair and homologous recombination RecO
Sinf_0527 recR; recombination protein RecR
Sinf_1892 recA; recombination protein A
Sinf_1851 polA; DNA polymerase I
Sinf_1897 ruvA; Holliday junction DNA helicase
Sinf_0039 ruvB; Holliday junction DNA helicase RuvB
Sinf_1611 recG; ATP-dependent DNA helicase RecG
Sinf_1661 exo-deoxyribonuclease V alpha subunit
Sinf_0753 dnaE; DNA polymerase III, subunit alpha
Sinf_0215 polC; DNA polymerase III (alpha subunit)
Sinf_0002 dnaN; DNA polymerase III (beta subunit)
Sinf_0597 dnaX; DNA polymerase III, gamma and tau subunits
Sinf_0546 DNA polymerase III delta subunit
Sinf_1482 holB; DNA polymerase III delta' subunit
Sinf_1686 DNA polymerase III epsilon subunit
|
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
|
03450 Non-homologous end-joining
|
03460 Fanconi anemia pathway
|
|
|
09126 Chromosome
|
|
|
09125 Information processing in viruses
|
|
|
09130 Environmental Information Processing
|
|
|
09140 Cellular Processes
|
|
|
09150 Organismal Systems
|
|
|
09160 Human Diseases
|
|
|
09180 Brite Hierarchies
|
|
|
09181 Protein families: metabolism
|
|
|
09182 Protein families: genetic information processing
|
03000 Transcription factors [BR:sif03000]
|
03021 Transcription machinery [BR:sif03021]
|
03019 Messenger RNA biogenesis [BR:sif03019]
|
03041 Spliceosome
|
03011 Ribosome [BR:sif03011]
|
03009 Ribosome biogenesis [BR:sif03009]
|
03016 Transfer RNA biogenesis [BR:sif03016]
|
03012 Translation factors [BR:sif03012]
|
03110 Chaperones and folding catalysts [BR:sif03110]
|
04131 Membrane trafficking [BR:sif04131]
|
04121 Ubiquitin system
|
03051 Proteasome
|
03032 DNA replication proteins [BR:sif03032]
|
03036 Chromosome and associated proteins [BR:sif03036]
|
03400 DNA repair and recombination proteins [BR:sif03400]
|
Sinf_0738 ung; uracil-DNA glycosylase
Sinf_1643 mutY; A/G-specific adenine glycosylase
Sinf_0643 nth; endonuclease III (DNA repair)
Sinf_0491 NTP pyrophosphohydrolase including oxidative damage repair enzyme
Sinf_0649 mutX; mutator MutT protein
Sinf_1215 NTP pyrophosphohydrolase, MutT/nudix family protein
Sinf_1399 MutT/NudX family protein (putative)
Sinf_1832 dut; Deoxy UTP pyrophosphatase (dUTPase)
Sinf_1896 tag; DNA-3-methyladenine glycosylase I
Sinf_1439 mutM; formamido pyrimidine-DNA glycosylase
Sinf_1472 exoA; exodeoxyribonuclease
Sinf_0638 recJ; single-stranded-DNA-specific exonuclease RecJ
Sinf_0608 ligA; DNA ligase (NAD-dependent)
Sinf_1851 polA; DNA polymerase I
Sinf_1628 uvrA; excinuclease ABC
Sinf_1216 uvrB; excinuclease ABC (subunit B)
Sinf_0694 uvrC; excinuclease ABC (subunit C)
Sinf_1020 pcrA; ATP-dependent DNA helicase PcrA
Sinf_0918 hypothetical protein
Sinf_0094 rpoB; DNA-directed RNA polymerase beta subunit
Sinf_0095 rpoC; RNA polymerase (beta' subunit)
Sinf_0072 rpoA; RNA polymerase (alpha subunit)
Sinf_0280 rpoE; RNA polymerase (delta subunit)
Sinf_0399 rpoZ; DNA-directed RNA polymerase omega chain
Sinf_0008 mfd; transcription repair coupling factor
Sinf_1899 mutS; DNA Mismatch repair ATPase (MutS family)
Sinf_1656 mutS2; Mismatch repair ATPase (MutS family)
Sinf_1898 mutL; DNA mismatch repair protein mutL
Sinf_0508 xseA; exodeoxyribonuclease VII large subunit
Sinf_0509 xseB; exodeoxyribonuclease VII small subunit
Sinf_0753 dnaE; DNA polymerase III, subunit alpha
Sinf_0215 polC; DNA polymerase III (alpha subunit)
Sinf_0002 dnaN; DNA polymerase III (beta subunit)
Sinf_0546 DNA polymerase III delta subunit
Sinf_1482 holB; DNA polymerase III delta' subunit
Sinf_1686 DNA polymerase III epsilon subunit
Sinf_0597 dnaX; DNA polymerase III, gamma and tau subunits
Sinf_0116 ssbB; single-strand DNA-binding protein
Sinf_1635 ssbA; single-strand DNA-binding protein
Sinf_1797 Single-stranded DNA-binding protein
Sinf_1661 exo-deoxyribonuclease V alpha subunit
Sinf_1892 recA; recombination protein A
Sinf_1897 ruvA; Holliday junction DNA helicase
Sinf_0039 ruvB; Holliday junction DNA helicase RuvB
Sinf_1831 radA; DNA repair protein RadA
Sinf_1953 recF; recombination protein RecF
Sinf_1611 recG; ATP-dependent DNA helicase RecG
Sinf_0023 recO; DNA repair and homologous recombination RecO
Sinf_0527 recR; recombination protein RecR
Sinf_0513 recN; DNA repair and genetic recombination proteinRecN
Sinf_0390 recU; recombination protein RecU
Sinf_0627 rexA; ATP-dependent deoxyribonuclease (subunit A)
Sinf_0626 rexB; ATP-dependent deoxyribonuclease (subunit B)
Sinf_1254 CRISPR-associated protein Cas1
Sinf_0969 gyrA; DNA gyrase A subunit
Sinf_1283 gyrB; DNA gyrase subunit B
Sinf_0909 topA; DNA topoisomerase I
Sinf_0517 hup; DNA-binding protein HU
Sinf_0776 Recombinational DNA repair protein RecT (prophage associated)
Sinf_1663 dinP; DNA polymerase IV
Sinf_0886 ImpB/MucB/SamB family protein
Sinf_0922 ImpB/MucB/SamB family protein
Sinf_0884 Pleiotropic regulator of exopolysaccharide synthesis, competence and biofilm formation Ftr, XRE family
Sinf_0900 transcriptional regulator
Sinf_0418 recX; RecA regulator RecX
Sinf_1317 DnaQ family exonuclease/DinG family helicase
Sinf_0578 nrdE; ribonucleoside-diphosphate reductase(major subunit)
Sinf_0577 nrdF; ribonucleoside-diphosphate reductase (minor subunit)
Sinf_1297 Exopolyphosphatase-related protein
|
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
|
03029 Mitochondrial biogenesis [BR:sif03029]
|
|
|
09183 Protein families: signaling and cellular processes
|
|
|
09185 Viral protein families
|
|
|
09184 RNA family
|
|
|
09190 Not Included in Pathway or Brite
|