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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:slp03030]
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03410 Base excision repair [PATH:slp03410]
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03420 Nucleotide excision repair [PATH:slp03420]
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03430 Mismatch repair [PATH:slp03430]
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03440 Homologous recombination [PATH:slp03440]
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 Slip_0767 single-stranded-DNA-specific exonuclease RecJ
Slip_2347 single-strand binding protein
Slip_0003 DNA replication and repair protein RecF
Slip_1696 DNA repair protein RecO
Slip_0036 recombination protein RecR
Slip_1050 recA protein
Slip_1695 DNA polymerase I
Slip_0742 Holliday junction DNA helicase RuvA
Slip_0743 Holliday junction DNA helicase RuvB
Slip_0741 crossover junction endodeoxyribonuclease RuvC
Slip_0891 ATP-dependent DNA helicase RecG
Slip_1704 DNA polymerase III, alpha subunit
Slip_0998 DNA polymerase III, alpha subunit
Slip_0002 DNA polymerase III, beta subunit
Slip_0034 DNA polymerase III, subunits gamma and tau
Slip_1664 DNA polymerase III, delta subunit
Slip_0048 DNA polymerase III, delta prime subunit
Slip_0858 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:slp03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:slp03000]
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03021 Transcription machinery [BR:slp03021]
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03019 Messenger RNA biogenesis [BR:slp03019]
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03041 Spliceosome
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03011 Ribosome [BR:slp03011]
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03009 Ribosome biogenesis [BR:slp03009]
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03016 Transfer RNA biogenesis [BR:slp03016]
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03012 Translation factors [BR:slp03012]
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03110 Chaperones and folding catalysts [BR:slp03110]
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04131 Membrane trafficking [BR:slp04131]
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04121 Ubiquitin system
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03051 Proteasome
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03032 DNA replication proteins [BR:slp03032]
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03036 Chromosome and associated proteins [BR:slp03036]
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03400 DNA repair and recombination proteins [BR:slp03400]
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Slip_1668 methylated-DNA/protein-cysteinemethyltransferase
Slip_1947 HhH-GPD family protein
Slip_0825 endonuclease III
Slip_0715 NUDIX hydrolase
Slip_1398 NUDIX hydrolase
Slip_1015 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Slip_0557 phage SPO1 DNA polymerase-related protein
Slip_1694 formamidopyrimidine-DNA glycosylase
Slip_0918 apurinic endonuclease Apn1
Slip_0767 single-stranded-DNA-specific exonuclease RecJ
Slip_0619 DNA ligase, NAD-dependent
Slip_1695 DNA polymerase I
Slip_1864 excinuclease ABC, A subunit
Slip_1865 excinuclease ABC, B subunit
Slip_1863 excinuclease ABC, C subunit
Slip_0618 UvrD/REP helicase
Slip_2245 DNA-directed RNA polymerase, beta subunit
Slip_2244 DNA-directed RNA polymerase, beta' subunit
Slip_2208 DNA-directed RNA polymerase, alpha subunit
Slip_2318 conserved hypothetical protein
Slip_0855 DNA-directed RNA polymerase, omega subunit
Slip_0108 transcription-repair coupling factor
Slip_1073 DNA mismatch repair protein MutS
Slip_1717 MutS2 family protein
Slip_1076 DNA mismatch repair protein MutL
Slip_0431 exodeoxyribonuclease VII, large subunit
Slip_0432 exodeoxyribonuclease VII, small subunit
Slip_1704 DNA polymerase III, alpha subunit
Slip_0998 DNA polymerase III, alpha subunit
Slip_0002 DNA polymerase III, beta subunit
Slip_1664 DNA polymerase III, delta subunit
Slip_0048 DNA polymerase III, delta prime subunit
Slip_0034 DNA polymerase III, subunits gamma and tau
Slip_2347 single-strand binding protein
Slip_2008 D12 class N6 adenine-specific DNA methyltransferase
Slip_1825 D12 class N6 adenine-specific DNA methyltransferase
Slip_1050 recA protein
Slip_0742 Holliday junction DNA helicase RuvA
Slip_0743 Holliday junction DNA helicase RuvB
Slip_0741 crossover junction endodeoxyribonuclease RuvC
Slip_0858 primosomal protein N'
Slip_0523 SMC domain protein
Slip_0522 nuclease SbcCD, D subunit
Slip_2267 DNA repair protein RadA
Slip_0003 DNA replication and repair protein RecF
Slip_0891 ATP-dependent DNA helicase RecG
Slip_1696 DNA repair protein RecO
Slip_0036 recombination protein RecR
Slip_0439 DNA repair protein RecN
Slip_0521 recombination helicase AddA
Slip_0520 ATP-dependent nuclease subunit B
Slip_1543 CRISPR-associated protein Cas1
Slip_1344 CRISPR-associated protein Cas1
Slip_1508 Ku protein
Slip_1510 DNA polymerase LigD, polymerase domain protein
Slip_1509 ATP dependent DNA ligase
Slip_0006 DNA gyrase, A subunit
Slip_0005 DNA gyrase, B subunit
Slip_0944 DNA topoisomerase I
Slip_1586 histone family protein DNA-binding protein
Slip_0112 histone family protein DNA-binding protein
Slip_2037 histone family protein DNA-binding protein
Slip_2143 UMUC domain protein DNA-repair protein
Slip_1084 transcriptional repressor, LexA family
Slip_2141 DNA polymerase III, alpha subunit
Slip_1723 PHP domain protein
Slip_0591 helicase c2
Slip_1980 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
Slip_1005 phosphoesterase RecJ domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:slp03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Syntrophothermus lipocalidus