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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:smx03030]
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03410 Base excision repair [PATH:smx03410]
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03420 Nucleotide excision repair [PATH:smx03420]
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03430 Mismatch repair [PATH:smx03430]
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03440 Homologous recombination [PATH:smx03440]
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 SM11_chr1678 recJ; single-stranded-DNA-specific exonuclease
SM11_chr2007 ssb; single-strand DNA-binding protein
SM11_chr3660 recF; DNA replication and repair protein recF
SM11_chr0753 recO; probabable RecO
SM11_chr3707 recR; Recombination protein recR
SM11_chr1599 recA; recombinase A
SM11_chr3647 polA; DNA polymerase I
SM11_chr2914 ruvA; Holliday junction DNA helicase motor protein
SM11_chr2913 ruvB; Holliday junction DNA helicase B
SM11_chr2915 ruvC; crossover junction endodeoxyribonuclease RuvC
SM11_chr1755 recG; ATP-dependent DNA helicase RecG
SM11_chr2285 dnaE1; putative DNA polymerase III alpha chain protein
SM11_chr3812 dnaN; DNA polymerase III beta subunit
SM11_chr3704 dnaX; DNA polymerase III subunits gamma and tau
SM11_chr3457 putative DNA polymerase III, delta subunit
SM11_chr1957 holB; DNA polymerase III, delta prime subunit
SM11_pC1603 conserved hypothetical protein
SM11_chr3470 dnaQ; DNA polymerase III epsilon subunit
SM11_chr2508 putative DNA polymerase III chi subunit
SM11_chr3218 priA; probabable primosomal protein N' (replication factor Y)
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:smx03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:smx03000]
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03021 Transcription machinery [BR:smx03021]
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03019 Messenger RNA biogenesis [BR:smx03019]
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03041 Spliceosome
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03011 Ribosome [BR:smx03011]
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03009 Ribosome biogenesis [BR:smx03009]
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03016 Transfer RNA biogenesis [BR:smx03016]
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03012 Translation factors [BR:smx03012]
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03110 Chaperones and folding catalysts [BR:smx03110]
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04131 Membrane trafficking [BR:smx04131]
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04121 Ubiquitin system
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03051 Proteasome [BR:smx03051]
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03032 DNA replication proteins [BR:smx03032]
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03036 Chromosome and associated proteins [BR:smx03036]
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03400 DNA repair and recombination proteins [BR:smx03400]
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SM11_pD0205 putative methylated-DNA-protein-cysteine methyltransferase
SM11_pC1562 Hypothetical protein
SM11_chr3098 ung; uracil-DNA glycosylase
SM11_pD0204 putative 3-methyladenine DNA glycosylase protein
SM11_chr0584 mutY; A/G-specific adenine glycosylase protein
SM11_chr3639 nth; endonuclease III protein
SM11_chr2783 mutT; putative mutator protein 7,8-dihydro-8-oxoguanine-triphosphatase
SM11_chr3822 dnaS; deoxyuridine 5'-triphosphate nucleotidohydrolase
SM11_chr0070 ada1; putative methylated-DNA--protein-cysteine methyltransferase transcription regulator
SM11_chr3637 ada2; putative methylated-DNA--protein-cysteine methyltransferase transcription regulator
SM11_chr3512 alkB; Alkylated DNA repair protein
SM11_chr0695 putative DNA polymerase bacteriophage-type
SM11_pD0342 putative DNA polymerase related protein
SM11_chr2797 alkA; DNA-3-methyladenine glycosidase II
SM11_chr0436 tag; DNA-3-methyladenine glycosylase I
SM11_chr3845 mutM; probabable formamidopyrimidine-dna glycosylase protein
SM11_chr1759 xthA1; probabable exodeoxyribonuclease III protein
SM11_chr2048 xthA2; putative exodeoxyribonuclease III protein
SM11_pD0223 xthA4; probabable exodeoxyribonuclease III protein
SM11_chr3328 xthA3; putative exodeoxyribonuclease III protein
SM11_chr1678 recJ; single-stranded-DNA-specific exonuclease
SM11_chr1153 ligA; DNA ligase
SM11_chr3647 polA; DNA polymerase I
SM11_chr2008 uvrA; excinuclease ABC subunit A
SM11_chr1496 uvrB; excinuclease ABC subunit B
SM11_chr2492 uvrC; excinuclease ABC subunit C
SM11_chr1174 uvrD1; DNA helicase II
SM11_chr0892 UvrD/REP helicase
SM11_pC0046 uvrD2; UvrD2 DNA helicase
SM11_chr2224 rpoB; DNA-directed RNA polymerase beta chain
SM11_chr2223 rpoC; DNA-directed RNA polymerase subunit beta'
SM11_chr2192 rpoA; RpoA
SM11_chr0727 rpoZ; RpoZ
SM11_chr1757 mfd; transcription-repair coupling factor (TRCF) protein
SM11_chr0029 mutS; DNA mismatch repair protein
SM11_chr0469 mutL; DNA mismatch repair protein
SM11_chr3774 xseA; putative exodeoxyribonuclease 7 large subunit
SM11_chr0537 xseB; putative exodeoxyribonuclease 7 small subunit
SM11_chr2285 dnaE1; putative DNA polymerase III alpha chain protein
SM11_chr3812 dnaN; DNA polymerase III beta subunit
SM11_chr2508 putative DNA polymerase III chi subunit
SM11_chr3457 putative DNA polymerase III, delta subunit
SM11_chr1957 holB; DNA polymerase III, delta prime subunit
SM11_pC1603 conserved hypothetical protein
SM11_chr3470 dnaQ; DNA polymerase III epsilon subunit
SM11_chr3704 dnaX; DNA polymerase III subunits gamma and tau
SM11_chr2007 ssb; single-strand DNA-binding protein
SM11_chr1599 recA; recombinase A
SM11_chr2914 ruvA; Holliday junction DNA helicase motor protein
SM11_chr2913 ruvB; Holliday junction DNA helicase B
SM11_chr2915 ruvC; crossover junction endodeoxyribonuclease RuvC
SM11_chr3218 priA; probabable primosomal protein N' (replication factor Y)
SM11_chr2538 radA; DNA repair protein radA
SM11_chr3660 recF; DNA replication and repair protein recF
SM11_chr1755 recG; ATP-dependent DNA helicase RecG
SM11_chr0753 recO; probabable RecO
SM11_chr3707 recR; Recombination protein recR
SM11_chr1152 recN; DNA repair protein RecN
SM11_chr3498 ATP-dependent nuclease / helicase
SM11_chr3499 addB; Double-strand break repair protein AddB
SM11_chr0623 hypothetical protein
SM11_pC1480 conserved hypothetical protein
SM11_pD0372 hypothetical protein
SM11_pD0373 hypothetical protein
SM11_pD0226 putative DNA ligase
SM11_chr2371 ligD; DNA polymerase LigD ligase region
SM11_pC1481 ATP-dependent DNA ligase
SM11_pD0393 Hypothetical protein
SM11_chr2907 probabable ATP-dependent DNA ligase
SM11_pC1486 conserved hypothetical protein
SM11_pD0933 putative ATP-dependent DNA ligase protein
SM11_chr2005 gyrA; DNA gyrase subunit A
SM11_chr3477 gyrB; DNA gyrase subunit B
SM11_pD0345 putative DNA topoisomerase I
SM11_chr2274 topA; DNA topoisomerase I
SM11_chr2339 hupB; DNA-binding protein HU
SM11_chr2440 himA; integration host factor subunit alpha
SM11_chr0019 ihfB; integration host factor subunit beta
SM11_chr0862 recQ; ATP-dependent DNA helicase RecQ
SM11_pC1065 putative DNA polymerase
SM11_pC0028 Nucleotidyltransferase/DNA polymerase
SM11_chr2283 dinB1; putative DNA polymerase IV 1
SM11_chr1947 lexA; LexA repressor
SM11_pC1064 conserved hypothetical protein
SM11_chr3298 hypothetical protein
SM11_pC1063 conserved hypothetical protein
SM11_chr3297 imuB; putative DNA polymerase
SM11_pC1061 dnaE3-2; DnaE3 putative DNA polymerase III alpha chain
SM11_chr3296 dnaE2; putative DNA polymerase III alpha chain protein
SM11_chr0167 lhr; putative ATP-dependent helicase protein
SM11_chr2010 nrdJ; Vitamin B12-dependent ribonucleotide reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:smx03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Sinorhizobium meliloti SM11