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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:spl03030]
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03410 Base excision repair [PATH:spl03410]
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03420 Nucleotide excision repair [PATH:spl03420]
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03430 Mismatch repair [PATH:spl03430]
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03440 Homologous recombination [PATH:spl03440]
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 Spea_0807 single-stranded-DNA-specific exonuclease RecJ
Spea_0571 single-strand binding protein
Spea_0003 DNA replication and repair protein RecF
Spea_1039 DNA repair protein RecO
Spea_1525 recombination protein RecR
Spea_1195 recA protein
Spea_0102 DNA polymerase I
Spea_2363 Holliday junction DNA helicase RuvA
Spea_2362 Holliday junction DNA helicase RuvB
Spea_2364 crossover junction endodeoxyribonuclease RuvC
Spea_3884 ATP-dependent DNA helicase RecG
Spea_2420 exodeoxyribonuclease V, beta subunit
Spea_2419 exodeoxyribonuclease V, gamma subunit
Spea_2421 exodeoxyribonuclease V, alpha subunit
Spea_2870 DNA polymerase III, alpha subunit
Spea_0002 DNA polymerase III, beta subunit
Spea_1508 DNA polymerase III, subunits gamma and tau
Spea_3145 DNA polymerase III, delta subunit
Spea_1924 DNA polymerase III, delta prime subunit
Spea_1999 DNA polymerase III, epsilon subunit
Spea_1698 Exonuclease RNase T and DNA polymerase III
Spea_2402 DNA polymerase III, epsilon subunit
Spea_0902 DNA polymerase III chi subunit HolC
Spea_3778 primosomal protein N'
Spea_3585 single-strand binding protein/Primosomal replication protein n
Spea_2658 primosomal replication protein N'', putative
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:spl03000]
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03021 Transcription machinery [BR:spl03021]
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03019 Messenger RNA biogenesis [BR:spl03019]
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03041 Spliceosome
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03011 Ribosome [BR:spl03011]
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03009 Ribosome biogenesis [BR:spl03009]
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03016 Transfer RNA biogenesis [BR:spl03016]
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03012 Translation factors [BR:spl03012]
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03110 Chaperones and folding catalysts [BR:spl03110]
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04131 Membrane trafficking [BR:spl04131]
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04121 Ubiquitin system [BR:spl04121]
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03051 Proteasome [BR:spl03051]
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03032 DNA replication proteins [BR:spl03032]
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03036 Chromosome and associated proteins [BR:spl03036]
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03400 DNA repair and recombination proteins [BR:spl03400]
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Spea_1459 methylated-DNA--protein-cysteine methyltransferase
Spea_3314 uracil-DNA glycosylase
Spea_1108 A/G-specific adenine glycosylase
Spea_2359 endonuclease III
Spea_0407 mutator MutT protein
Spea_0812 NUDIX hydrolase
Spea_3839 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Spea_1458 transcriptional regulator, AraC family
Spea_0008 DNA-3-methyladenine glycosylase I
Spea_4104 formamidopyrimidine-DNA glycosylase
Spea_1638 exodeoxyribonuclease III
Spea_1070 apurinic endonuclease Apn1
Spea_0807 single-stranded-DNA-specific exonuclease RecJ
Spea_1689 DNA ligase, NAD-dependent
Spea_0102 DNA polymerase I
Spea_0569 excinuclease ABC, A subunit
Spea_2351 excinuclease ABC, B subunit
Spea_2291 excinuclease ABC, B subunit
Spea_1954 excinuclease ABC, C subunit
Spea_0468 DNA helicase II
Spea_0177 DNA-directed RNA polymerase, beta subunit
Spea_0178 DNA-directed RNA polymerase, beta' subunit
Spea_0209 DNA-directed RNA polymerase, alpha subunit
Spea_3878 DNA-directed RNA polymerase, omega subunit
Spea_1543 transcription-repair coupling factor
Spea_1194 DNA mismatch repair protein MutS
Spea_3542 DNA mismatch repair protein MutL
Spea_1020 DNA mismatch repair endonuclease mutH
Spea_2487 Exodeoxyribonuclease I
Spea_1312 exodeoxyribonuclease VII, large subunit
Spea_2989 exodeoxyribonuclease VII, small subunit
Spea_2870 DNA polymerase III, alpha subunit
Spea_0002 DNA polymerase III, beta subunit
Spea_0902 DNA polymerase III chi subunit HolC
Spea_3145 DNA polymerase III, delta subunit
Spea_1924 DNA polymerase III, delta prime subunit
Spea_1999 DNA polymerase III, epsilon subunit
Spea_1698 Exonuclease RNase T and DNA polymerase III
Spea_2402 DNA polymerase III, epsilon subunit
Spea_1508 DNA polymerase III, subunits gamma and tau
Spea_0571 single-strand binding protein
Spea_0241 DNA adenine methylase
Spea_2420 exodeoxyribonuclease V, beta subunit
Spea_2419 exodeoxyribonuclease V, gamma subunit
Spea_2421 exodeoxyribonuclease V, alpha subunit
Spea_1195 recA protein
Spea_2363 Holliday junction DNA helicase RuvA
Spea_2362 Holliday junction DNA helicase RuvB
Spea_2364 crossover junction endodeoxyribonuclease RuvC
Spea_3778 primosomal protein N'
Spea_3585 single-strand binding protein/Primosomal replication protein n
Spea_2658 primosomal replication protein N'', putative
Spea_2633 SMC domain protein
Spea_2634 nuclease SbcCD, D subunit
Spea_3032 DNA repair protein RadA
Spea_0003 DNA replication and repair protein RecF
Spea_3884 ATP-dependent DNA helicase RecG
Spea_1039 DNA repair protein RecO
Spea_1525 recombination protein RecR
Spea_1169 DNA repair protein RecN
Spea_2971 putative exonuclease RdgC
Spea_2559 type III restriction protein res subunit
Spea_2067 DNA gyrase, A subunit
Spea_0004 DNA gyrase, B subunit
Spea_1535 DNA topoisomerase I
Spea_2678 histone family protein DNA-binding protein
Spea_3731 histone family protein DNA-binding protein
Spea_0389 transcriptional regulator, Fis family
Spea_2468 integration host factor, alpha subunit
Spea_2074 integration host factor, beta subunit
Spea_3830 ATP-dependent DNA helicase RecQ
Spea_2238 ATP-dependent DNA helicase, RecQ family
Spea_2856 histone family protein nucleoid-structuring protein H-NS
Spea_3092 DNA-directed DNA polymerase
Spea_2195 DNA-directed DNA polymerase
Spea_2196 peptidase S24 and S26 domain protein
Spea_3997 transcriptional repressor, LexA family
Spea_2655 DNA polymerase B region
Spea_1595 regulatory protein RecX
Spea_0360 ATP-dependent DNA helicase Rep
Spea_2292 UvrD/REP helicase
Spea_2656 helicase c2
Spea_2455 helicase c2
Spea_2064 ribonucleoside-diphosphate reductase, alpha subunit
Spea_2063 Ribonucleoside-diphosphate reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K19789 radD; DNA repair protein RadD
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:spl03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Shewanella pealeana