SPA2910 recJ; single-stranded DNA-specific exonuclease
       SPA4072 ssb; single-strand DNA-binding protein
       SPA3680 recF; recF protein
       SPA0286 recO; DNA repair protein RecO
       SPA2236 recR; recombination protein RecR
       SPA2687 recA; RecA protein
       SPA3840 polA; DNA polymerase I
       SPA0974 ruvA; Holliday junction DNA helicase
       SPA0975 ruvB; Holliday junction DNA helicase
       SPA0971 ruvC; crossover junction endodeoxyribonuclease
       SPA3596 recG; ATP-dependent DNA helicase
       SPA2859 recB; exonuclease V subunit
       SPA2861 recC; exonuclease V subunit
       SPA2858 recD; exonuclease V alpha-subunit
       SPA0238 dnaE; DNA polymerase III, alpha chain
       SPA3681 dnaN; DNA polymerase III beta-subunit
       SPA2238 dnaX; DNA polymerase III subunits gamma and tau
       SPA2088 holA; DNA polymerase III, delta subunit
       SPA1650 holB; DNA polymerase III, delta' subunit
       SPA2505 dnaQ; DNA polymerase III epsilon subunit
       SPA0993 holE; DNA polymerase III, theta subunit
       SPA4277 holC; DNA polymerase III, chi subunit
       SPA4371 holD; DNA polymerase III, psi subunit
       SPA3938 priA; primosomal protein replication factor
       SPA4209 priB; primosomal replication protein N
       SPA2241 priC; primosomal replication protein N
       SPA4358 dnaT; primosomal protein I

K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT

       SPA1225 ogt; O6-methylguanine-DNA-alkyltransferase
       SPA2032 phrB; deoxyribodipyrimidine photolyase
       SPA0271 ung; uracil-DNA glycosylase
       SPA2973 mutY; A/G-specific adenine glycosylase
       SPA1400 nth; endonuclease III
       SPA0139 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase
       SPA3583 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
       SPA0599 ada; ADA regulatory protein
       SPA0600 alkB; AlkB protein
       SPA3080 mug; G/U mismatch-specific DNA glycosylase
       SPA0742 alkA; DNA-3-methyladenine glycosidase II
       SPA3494 tag; 3-methyladenine DNA glycosylase I, constitutive
       SPA3578 mutM; formamidopyrimidine-DNA glycosylase
       SPA2015 nei; endonuclease VIII, DNA N-glycosylase with an AP lyase activity
       SPA1542 xthA; exodeoxyribonuclease III
       SPA0648 nfo; endonuclease IV
       SPA4005 nfi; putative endonuclease
       SPA2910 recJ; single-stranded DNA-specific exonuclease
       SPA0438 ligA; DNA ligase
       SPA3591 yicF; putative DNA ligase
       SPA3840 polA; DNA polymerase I
       SPA4071 uvrA; excision nuclease subunit A
       SPA1954 uvrB; excision nuclease ABC subunit B
       SPA0923 uvrC; excinuclease ABC subunit C
       SPA1535 conserved hypothetical protein
       SPA3792 uvrD; DNA helicase II
       SPA3991 rpoB; DNA-directed RNA polymerase, beta-subunit
       SPA3992 rpoC; DNA-directed RNA polymerase, beta'-subunit
       SPA3281 rpoA; DNA-directed RNA polymerase alpha chain
       SPA3593 rpoZ; DNA-directed RNA polymerase omega chain
       SPA1634 mfd; transcription-repair coupling factor (TrcF)
       SPA2766 mutS; DNA mismatch repair protein
       SPA4176 mutL; DNA mismatch repair protein
       SPA2870 mutH; DNA mismatch repair protein
       SPA0804 sbcB; exodeoxyribonuclease I
       SPA0355 xseA; exodeoxyribonuclease large subunit
       SPA2299 xseB; exodeoxyribonuclease small subunit
       SPA0991 exoX; exodeoxyribonuclease X
       SPA0238 dnaE; DNA polymerase III, alpha chain
       SPA3681 dnaN; DNA polymerase III beta-subunit
       SPA4277 holC; DNA polymerase III, chi subunit
       SPA2088 holA; DNA polymerase III, delta subunit
       SPA1650 holB; DNA polymerase III, delta' subunit
       SPA2505 dnaQ; DNA polymerase III epsilon subunit
       SPA2238 dnaX; DNA polymerase III subunits gamma and tau
       SPA4371 holD; DNA polymerase III, psi subunit
       SPA0993 holE; DNA polymerase III, theta subunit
       SPA4072 ssb; single-strand DNA-binding protein
       SPA2591 DNA adenine methylase
       SPA3349 dam; DNA adenine methylase
       SPA2624 putative phage gene
       SPA0879 vsr; patch repair protein
       SPA2859 recB; exonuclease V subunit
       SPA2861 recC; exonuclease V subunit
       SPA2858 recD; exonuclease V alpha-subunit
       SPA2687 recA; RecA protein
       SPA0974 ruvA; Holliday junction DNA helicase
       SPA0975 ruvB; Holliday junction DNA helicase
       SPA0971 ruvC; crossover junction endodeoxyribonuclease
       SPA2401 rus; hypothetical protein
       SPA3938 priA; primosomal protein replication factor
       SPA4209 priB; primosomal replication protein N
       SPA2241 priC; primosomal replication protein N
       SPA4358 dnaT; primosomal protein I
       SPA2328 sbcC; exonuclease SbcC
       SPA2327 sbcD; exonuclease SbcD
       SPA4389 radA; putative DNA repair protein
       SPA3680 recF; recF protein
       SPA3596 recG; ATP-dependent DNA helicase
       SPA0286 recO; DNA repair protein RecO
       SPA2236 recR; recombination protein RecR
       SPA2543 recN; DNA repair protein
       SPA2331 rdgC; recombination associated protein RdgC
       SPA2794 conserved hypothetical protein
       SPA0627 yejH; putative helicase
       SPA0592 gyrA; DNA gyrase subunit A
       SPA3679 gyrB; DNA gyrase subunit B
       SPA1162 topA; DNA topoisomerase I, omega protein I
       SPA4007 hupA; histone like DNA-binding protein HU-alpha (NS2) (HU-2)
       SPA2271 hupB; DNA-binding protein HU-beta
       SPA3252 fis; Fis DNA-binding protein
       SPA1504 himA; integration host factor alpha-subunit
       SPA1816 himD; integration host factor beta-subunit (IHF-beta)
       SPA3799 recQ; ATP-dependent DNA helicase
       SPA1127 hns; DNA-binding protein (histone-like protein Hlp-II)
       SPA2442 dinP; hypothetical protein DinP (DNA damage-inducible protein)
       SPA0873 umuC; UmuC protein
       SPA0872 umuD; UmuD protein
       SPA4054 lexA; LexA repressor
       SPA0098 polB; DNA polymerase II
       SPA1689 dinI; damage-inducible protein
       SPA2588 hypothetical protein
       SPA2686 oraA; putative regulatory protein RecX
       SPA3373 conserved hypothetical protein
       SPA3753 rep; ATP-dependent DNA helicase
       SPA1775 helD; helicase IV (75 kD helicase)
       SPA1932 dinG; LexA regulated (SOS) repair enzyme
       SPA1052 yoaA; putative ATP-dependent helicase
       SPA0587 nrdA; ribonucleoside-diphosphate reductase 1 alpha chain
       SPA2665 nrdE; ribonucleoside-diphosphate reductase 2 alpha chain
       SPA0586 nrdB; ribonucleoside-diphosphate reductase 1 beta chain

K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K12149 dinI; DNA-damage-inducible protein I
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]