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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:suq03030]
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03410 Base excision repair [PATH:suq03410]
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03420 Nucleotide excision repair [PATH:suq03420]
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03430 Mismatch repair [PATH:suq03430]
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03440 Homologous recombination [PATH:suq03440]
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 HMPREF0772_11506 recJ; single-stranded-DNA-specific exonuclease RecJ
HMPREF0772_11095 single-strand binding family protein
HMPREF0772_10128 single-strand binding family protein
HMPREF0772_10464 recF; DNA replication and repair protein RecF
HMPREF0772_11574 recO; DNA repair protein RecO
HMPREF0772_10042 recR; recombination protein RecR
HMPREF0772_11943 recA; RecA protein
HMPREF0772_11461 polA; DNA-directed DNA polymerase
HMPREF0772_11500 ruvA; Holliday junction DNA helicase RuvA
HMPREF0772_11501 ruvB; Holliday junction DNA helicase RuvB
HMPREF0772_10982 divergent AAA domain protein
HMPREF0772_12005 recG; ATP-dependent DNA helicase RecG
HMPREF0772_11522 helicase, RecD/TraA family
HMPREF0772_11449 DNA polymerase III, alpha subunit
HMPREF0772_11965 polC; DNA polymerase III, alpha subunit, Gram-positive type
HMPREF0772_10466 dnaN; DNA polymerase III, beta subunit
HMPREF0772_10044 dnaX; DNA polymerase III, subunit gamma and tau
HMPREF0772_11554 holA; DNA polymerase III, delta subunit
HMPREF0772_10037 hypothetical protein
HMPREF0772_11249 exonuclease
HMPREF0772_12020 priA; primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:suq03000]
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03021 Transcription machinery [BR:suq03021]
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03019 Messenger RNA biogenesis [BR:suq03019]
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03041 Spliceosome
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03011 Ribosome [BR:suq03011]
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03009 Ribosome biogenesis [BR:suq03009]
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03016 Transfer RNA biogenesis [BR:suq03016]
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03012 Translation factors [BR:suq03012]
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03110 Chaperones and folding catalysts [BR:suq03110]
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04131 Membrane trafficking [BR:suq04131]
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04121 Ubiquitin system [BR:suq04121]
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03051 Proteasome
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03032 DNA replication proteins [BR:suq03032]
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03036 Chromosome and associated proteins [BR:suq03036]
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03400 DNA repair and recombination proteins [BR:suq03400]
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HMPREF0772_10644 6-O-methylguanine DNA methyltransferase, DNA binding domain protein
HMPREF0772_12496 FAD binding domain of DNA photolyase
HMPREF0772_12608 ung; uracil-DNA glycosylase
HMPREF0772_10850 DNA-3-methyladenine glycosylase
HMPREF0772_11276 mutY; A/G-specific adenine glycosylase
HMPREF0772_11752 nth; endonuclease III
HMPREF0772_10701 mutator mutT protein
HMPREF0772_11363 ytkD; nucleoside triphosphatase YtkD
HMPREF0772_11679 dut; dUTP diphosphatase
HMPREF0772_12220 hypothetical protein
HMPREF0772_11485 tag; DNA-3-methyladenine glycosylase I
HMPREF0772_11462 mutM; DNA-formamidopyrimidine glycosylase
HMPREF0772_11583 apurinic endonuclease (APN1)
HMPREF0772_11506 recJ; single-stranded-DNA-specific exonuclease RecJ
HMPREF0772_11238 ligA; DNA ligase (NAD+)
HMPREF0772_11461 polA; DNA-directed DNA polymerase
HMPREF0772_12422 uvrA; excinuclease ABC, A subunit
HMPREF0772_12423 uvrB; excinuclease ABC, B subunit
HMPREF0772_12087 uvrC; excinuclease ABC, C subunit
HMPREF0772_11237 pcrA; ATP-dependent DNA helicase PcrA
HMPREF0772_12647 rpoB; DNA-directed RNA polymerase, beta subunit
HMPREF0772_12646 rpoC; DNA-directed RNA polymerase, beta' subunit
HMPREF0772_10974 rpoA; DNA-directed RNA polymerase, alpha subunit
HMPREF0772_11062 rpoE; DNA-directed RNA polymerase, delta subunit
HMPREF0772_12022 rpoZ; DNA-directed RNA polymerase, omega subunit
HMPREF0772_10016 mfd; transcription-repair coupling factor
HMPREF0772_11933 mutS; DNA mismatch repair protein MutS
HMPREF0772_12089 recombination and DNA strand exchange inhibitor protein
HMPREF0772_11931 MutL C-terminal dimerization domain protein
HMPREF0772_11932 mutL; DNA mismatch repair domain protein
HMPREF0772_11617 xseA; exodeoxyribonuclease VII, large subunit
HMPREF0772_11618 xseB; exodeoxyribonuclease VII, small subunit
HMPREF0772_11449 DNA polymerase III, alpha subunit
HMPREF0772_11965 polC; DNA polymerase III, alpha subunit, Gram-positive type
HMPREF0772_10466 dnaN; DNA polymerase III, beta subunit
HMPREF0772_11554 holA; DNA polymerase III, delta subunit
HMPREF0772_10037 hypothetical protein
HMPREF0772_11249 exonuclease
HMPREF0772_10044 dnaX; DNA polymerase III, subunit gamma and tau
HMPREF0772_11095 single-strand binding family protein
HMPREF0772_10128 single-strand binding family protein
HMPREF0772_11522 helicase, RecD/TraA family
HMPREF0772_11943 recA; RecA protein
HMPREF0772_11500 ruvA; Holliday junction DNA helicase RuvA
HMPREF0772_11501 ruvB; Holliday junction DNA helicase RuvB
HMPREF0772_12020 priA; primosomal protein N'
HMPREF0772_11862 exonuclease SbcCD, C subunit
HMPREF0772_11863 sbcD; exonuclease SbcCD, D subunit
HMPREF0772_12665 radA; DNA repair protein RadA
HMPREF0772_10464 recF; DNA replication and repair protein RecF
HMPREF0772_10982 divergent AAA domain protein
HMPREF0772_12005 recG; ATP-dependent DNA helicase RecG
HMPREF0772_11574 recO; DNA repair protein RecO
HMPREF0772_10042 recR; recombination protein RecR
HMPREF0772_11621 recN; DNA repair protein RecN
HMPREF0772_11755 recU; recombination protein U
HMPREF0772_12279 addA; ATP-dependent nuclease subunit A
HMPREF0772_12280 addB; ATP-dependent nuclease subunit B
HMPREF0772_10462 gyrA; DNA gyrase, A subunit
HMPREF0772_10463 gyrB; DNA gyrase, B subunit
HMPREF0772_11980 topA; DNA topoisomerase I
HMPREF0772_11733 hup; DNA-binding protein HU
HMPREF0772_11724 ATP-dependent DNA helicase, RecQ family
HMPREF0772_12466 recQ; ATP-dependent DNA helicase RecQ
HMPREF0772_11248 dinB; DNA polymerase IV
HMPREF0772_11843 ImpB/MucB/SamB family protein
HMPREF0772_11869 lexA; repressor LexA
HMPREF0772_11271 recX; regulatory protein RecX
HMPREF0772_12090 PHP domain protein
HMPREF0772_11749 putative DnaQ family exonuclease/DinG family helicase
HMPREF0772_12453 ribonucleoside-diphosphate reductase, alpha subunit
HMPREF0772_12452 ribonucleoside-diphosphate reductase, beta subunit
HMPREF0772_11448 DHHA1 domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:suq03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Staphylococcus aureus subsp. aureus TCH60