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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:tbe03030]
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03410 Base excision repair [PATH:tbe03410]
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03420 Nucleotide excision repair [PATH:tbe03420]
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03430 Mismatch repair [PATH:tbe03430]
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03440 Homologous recombination [PATH:tbe03440]
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 Trebr_1088 single-stranded-DNA-specific exonuclease RecJ
Trebr_0560 single-strand binding protein
Trebr_1431 single-strand binding protein
Trebr_0003 DNA replication and repair protein recF
Trebr_1089 DNA repair protein recO
Trebr_2414 Recombination protein recR
Trebr_1726 Protein recA
Trebr_2076 DNA polymerase I
Trebr_1479 Holliday junction ATP-dependent DNA helicase ruvA
Trebr_1480 Holliday junction ATP-dependent DNA helicase ruvB
Trebr_1535 Crossover junction endodeoxyribonuclease ruvC
Trebr_0795 ATP-dependent DNA helicase RecG
Trebr_2452 putative transcriptional regulator
Trebr_2459 putative transcriptional regulator
Trebr_0797 DNA polymerase III, alpha subunit
Trebr_0002 DNA polymerase III, beta subunit
Trebr_1153 DNA polymerase III domain-containing protein
Trebr_2416 DNA polymerase III, subunits gamma and tau
Trebr_2129 DNA polymerase III, delta subunit
Trebr_1593 DNA polymerase III, epsilon subunit
Trebr_1170 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:tbe03000]
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03021 Transcription machinery [BR:tbe03021]
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03019 Messenger RNA biogenesis [BR:tbe03019]
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03041 Spliceosome [BR:tbe03041]
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03011 Ribosome [BR:tbe03011]
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03009 Ribosome biogenesis [BR:tbe03009]
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03016 Transfer RNA biogenesis [BR:tbe03016]
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03012 Translation factors [BR:tbe03012]
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03110 Chaperones and folding catalysts [BR:tbe03110]
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04131 Membrane trafficking [BR:tbe04131]
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04121 Ubiquitin system
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03051 Proteasome [BR:tbe03051]
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03032 DNA replication proteins [BR:tbe03032]
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03036 Chromosome and associated proteins [BR:tbe03036]
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03400 DNA repair and recombination proteins [BR:tbe03400]
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Trebr_2322 methylated-DNA/protein-cysteinemethyltransferase
Trebr_1529 HhH-GPD family protein
Trebr_0347 endonuclease III
Trebr_0364 helicase domain-containing protein
Trebr_2369 NUDIX hydrolase
Trebr_1312 NUDIX hydrolase
Trebr_1252 Deoxyuridine 5'-triphosphate nucleotidohydrolase
Trebr_1171 phage SPO1 DNA polymerase-related protein
Trebr_1630 DNA-3-methyladenine glycosylase I
Trebr_0477 exodeoxyribonuclease III Xth
Trebr_1058 endonuclease 4
Trebr_1088 single-stranded-DNA-specific exonuclease RecJ
Trebr_1211 DNA ligase
Trebr_2076 DNA polymerase I
Trebr_0845 UvrABC system protein A
Trebr_1115 UvrABC system protein B
Trebr_1963 UvrABC system protein C
Trebr_0525 UvrD/REP helicase
Trebr_1501 UvrD/REP helicase
Trebr_2301 DNA-directed RNA polymerase subunit beta
Trebr_2300 DNA-directed RNA polymerase subunit beta'
Trebr_2270 DNA-directed RNA polymerase subunit alpha
Trebr_1161 RNA polymerase Rpb6
Trebr_1353 transcription-repair coupling factor
Trebr_1582 DNA mismatch repair protein mutS
Trebr_1662 MutS2 protein
Trebr_1844 DNA mismatch repair protein mutL
Trebr_1842 Exodeoxyribonuclease 7 large subunit
Trebr_1843 Exodeoxyribonuclease 7 small subunit
Trebr_0797 DNA polymerase III, alpha subunit
Trebr_0002 DNA polymerase III, beta subunit
Trebr_2129 DNA polymerase III, delta subunit
Trebr_1593 DNA polymerase III, epsilon subunit
Trebr_1153 DNA polymerase III domain-containing protein
Trebr_2416 DNA polymerase III, subunits gamma and tau
Trebr_0560 single-strand binding protein
Trebr_1431 single-strand binding protein
Trebr_1726 Protein recA
Trebr_1479 Holliday junction ATP-dependent DNA helicase ruvA
Trebr_1480 Holliday junction ATP-dependent DNA helicase ruvB
Trebr_1535 Crossover junction endodeoxyribonuclease ruvC
Trebr_1170 primosomal protein N'
Trebr_1824 exonuclease
Trebr_1823 nuclease SbcCD, D subunit
Trebr_0418 DNA repair protein RadA
Trebr_0003 DNA replication and repair protein recF
Trebr_0795 ATP-dependent DNA helicase RecG
Trebr_2452 putative transcriptional regulator
Trebr_2459 putative transcriptional regulator
Trebr_1089 DNA repair protein recO
Trebr_2414 Recombination protein recR
Trebr_1260 DNA repair protein RecN
Trebr_2174 CRISPR-associated protein Cas1
Trebr_2586 DNA gyrase, A subunit
Trebr_2587 DNA gyrase, B subunit
Trebr_0957 DNA topoisomerase I
Trebr_0591 ATP-dependent DNA helicase, RecQ family
Trebr_2130 SOS-response transcriptional repressor, LexA
Trebr_0636 regulatory protein RecX
Trebr_1832 helicase c2
Trebr_0370 ribonucleoside-diphosphate reductase, alpha subunit
Trebr_0369 ribonucleotide reductase
Trebr_1540 phosphoesterase RecJ domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:tbe03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Treponema brennaborense