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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:vco03030]
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03410 Base excision repair [PATH:vco03410]
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03420 Nucleotide excision repair [PATH:vco03420]
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03430 Mismatch repair [PATH:vco03430]
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03440 Homologous recombination [PATH:vco03440]
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 VC0395_A1993 recJ; single-stranded-DNA-specific exonuclease RecJ
VC0395_A2815 ssb; single-strand binding protein
VC0395_A2505 recF; recF protein
VC0395_A2037 recO; DNA repair protein RecO
VC0395_A0574 recR; recombination protein RecR
VC0395_A0070 recA; recA protein
VC0395_A2409 polI; DNA polymerase I
VC0395_A1437 ruvA; Holliday junction DNA helicase RuvA
VC0395_A1436 ruvB; Holliday junction DNA helicase RuvB
VC0395_A1438 ruvC; crossover junction endodeoxyribonuclease RuvC
VC0395_A2283 recG; ATP-dependent DNA helicase RecG
VC0395_A1904 recB; exodeoxyribonuclease V, 135 kDa subunit
VC0395_A1905 recC; exodeoxyribonuclease V, 125 kDa subunit
VC0395_A1903 recD; exodeoxyribonuclease V, 67 kDa subunit
VC0395_A1836 dnaE; DNA polymerase III, alpha subunit
VC0395_A2506 dnaN; DNA polymerase III, beta chain
VC0395_A0572 dnaZX; DNA polymerase III, subunits gamma and tau
VC0395_A0476 holA; DNA polymerase III, delta subunit
VC0395_A1601 holB; DNA polymerase III, delta prime subunit
VC0395_A0909 putative DNA polymerase III, epsilon subunit
VC0395_A2692 putative DNA polymerase III, epsilon subunit
VC0395_A1825 dnaQ; DNA polymerase III, epsilon subunit
VC0395_A2084 holC; DNA polymerase III, chi subunit
VC0395_A0187 holD; DNA polymerase III, psi subunit
VC0395_A2251 priA; primosomal protein N`
VC0395_A2778 priB; primosomal replication protein N
VC0395_A1448 priC; primosomal replication protein N``
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:vco03000]
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03021 Transcription machinery [BR:vco03021]
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03019 Messenger RNA biogenesis [BR:vco03019]
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03041 Spliceosome
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03011 Ribosome [BR:vco03011]
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03009 Ribosome biogenesis [BR:vco03009]
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03016 Transfer RNA biogenesis [BR:vco03016]
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03012 Translation factors [BR:vco03012]
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03110 Chaperones and folding catalysts [BR:vco03110]
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04131 Membrane trafficking [BR:vco04131]
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04121 Ubiquitin system [BR:vco04121]
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03051 Proteasome [BR:vco03051]
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03032 DNA replication proteins [BR:vco03032]
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03036 Chromosome and associated proteins [BR:vco03036]
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03400 DNA repair and recombination proteins [BR:vco03400]
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VC0395_0223 ogt; methylated-DNA--protein-cysteine S-methyltransferase
VC0395_A1004 cry2; cryptochrome Cry2
VC0395_0080 phrB-2; deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific
VC0395_A1938 ung; uracil-DNA glycosylase
VC0395_A0003 mutY; A/G-specific adenine glycosylase
VC0395_A0532 nth; endonuclease III
VC0395_A1971 mutT; mutator MutT protein
VC0395_0042 conserved hypothetical protein
VC0395_0425 conserved hypothetical protein
VC0395_0222 transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II
VC0395_A1277 tag; DNA-3-methyladenine glycosidase I
VC0395_A2602 mutM; formamidopyrimidine-DNA glycosylase
VC0395_A1451 xth; exodeoxyribonuclease III
VC0395_A1939 nfo; endonuclease IV
VC0395_A1993 recJ; single-stranded-DNA-specific exonuclease RecJ
VC0395_A0492 ligA-1; DNA ligase
VC0395_A2409 polI; DNA polymerase I
VC0395_A2812 uvrA; excinuclease ABC, subunit A
VC0395_A0540 uvrB; excinuclease ABC subunit B
VC0395_A0834 uvrC; excinuclease ABC, subunit C
VC0395_A2571 uvrD; DNA helicase II
VC0395_A2730 rpoB; DNA-directed RNA polymerase, beta subunit
VC0395_A2731 rpoC; DNA-directed RNA polymerase, beta' subunit
VC0395_A2149 rpoA; DNA-directed RNA polymerase, alpha subunit
VC0395_A2281 rpoZ; DNA-directed RNA polymerase, omega subunit
VC0395_A1476 mfd; transcription-repair coupling factor
VC0395_A0063 mutS; DNA mismatch repair protein MutS
VC0395_A2756 mutL; DNA mismatch repair protein MutL
VC0395_A0200 mutH; DNA mismatch repair protein MutH
VC0395_A0855 sbcB; exodeoxyribonuclease I
VC0395_A0294 xseA; exodeoxyribonuclease VII, large subunit
VC0395_A0414 xseB; exodeoxyribonuclease VII, small subunit
VC0395_A1836 dnaE; DNA polymerase III, alpha subunit
VC0395_A2506 dnaN; DNA polymerase III, beta chain
VC0395_A2084 holC; DNA polymerase III, chi subunit
VC0395_A0476 holA; DNA polymerase III, delta subunit
VC0395_A1601 holB; DNA polymerase III, delta prime subunit
VC0395_A0909 putative DNA polymerase III, epsilon subunit
VC0395_A2692 putative DNA polymerase III, epsilon subunit
VC0395_A1825 dnaQ; DNA polymerase III, epsilon subunit
VC0395_A0572 dnaZX; DNA polymerase III, subunits gamma and tau
VC0395_A0187 holD; DNA polymerase III, psi subunit
VC0395_A2815 ssb; single-strand binding protein
VC0395_A2203 dam; DNA adenine methylase
VC0395_A1904 recB; exodeoxyribonuclease V, 135 kDa subunit
VC0395_A1905 recC; exodeoxyribonuclease V, 125 kDa subunit
VC0395_A1903 recD; exodeoxyribonuclease V, 67 kDa subunit
VC0395_A0070 recA; recA protein
VC0395_A1437 ruvA; Holliday junction DNA helicase RuvA
VC0395_A1436 ruvB; Holliday junction DNA helicase RuvB
VC0395_A1438 ruvC; crossover junction endodeoxyribonuclease RuvC
VC0395_A2251 priA; primosomal protein N`
VC0395_A2778 priB; primosomal replication protein N
VC0395_A1448 priC; primosomal replication protein N``
VC0395_0454 putative exonuclease SbcC
VC0395_0453 putative exonuclease SbcD
VC0395_A1922 radA; DNA repair protein RadA
VC0395_A2505 recF; recF protein
VC0395_A2283 recG; ATP-dependent DNA helicase RecG
VC0395_A2037 recO; DNA repair protein RecO
VC0395_A0574 recR; recombination protein RecR
VC0395_A0378 recN; DNA repair protein RecN
VC0395_A0252 conserved hypothetical protein
VC0395_A2676 cas; crispr-associated protein Cas1
VC0395_A1242 ATP-dependent RNA helicase, DEAD/DEAH box family
VC0395_A0877 gyrA; DNA gyrase, subunit A
VC0395_A2504 gyrB; DNA gyrase, subunit B
VC0395_A1332 topA; DNA topoisomerase I
VC0395_A2650 hupA; DNA-binding protein HU
VC0395_A1509 hupB; DNA-binding protein HU-beta
VC0395_A2685 fis; factor-for-inversion stimulation protein
VC0395_A0846 himA; integration host factor, alpha subunit
VC0395_A1504 hipB; integration host factor, beta subunit
VC0395_A2576 recQ; ATP-dependent DNA helicase RecQ
VC0395_A0700 vicH; DNA-binding protein VicH
VC0395_A1876 dinP; DNA-damage-inducible protein P
VC0395_A2423 lexA; LexA repressor
VC0395_A0831 polB; DNA polymerase II
VC0395_A0071 recX; regulatory protein RecX
VC0395_A2555 rep; ATP-dependent DNA helicase Rep
VC0395_0656 helD; helicase IV
VC0395_A1575 putative ATP-dependent helicase
VC0395_A1446 putative ATP-dependent helicase
VC0395_A0875 nrdA; ribonucleoside-diphosphate reductase, alpha subunit
VC0395_A0874 nrdB; ribonucleoside-diphosphate reductase, beta subunit
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:vco03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Vibrio cholerae O1 O395