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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:vpa03030]
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03410 Base excision repair [PATH:vpa03410]
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03420 Nucleotide excision repair [PATH:vpa03420]
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03430 Mismatch repair [PATH:vpa03430]
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03440 Homologous recombination [PATH:vpa03440]
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 VP0511 single-stranded-DNA-specific exonuclease RecJ
VP2709 single-strand binding protein
VP0013 RecF protein
VP2570 DNA repair protein RecO
VP2177 recombination protein RecR
VP2550 RecA protein
VP0107 DNA polymerase I
VP1051 holliday junction DNA helicase RuvA
VP1052 holliday junction DNA helicase RuvB
VP1048 crossover junction endodeoxyribonuclease RuvC
VP0157 ATP-dependent DNA helicase RecG
VP2374 exodeoxyribonuclease V, 135 kDa subunit
VP2375 exodeoxyribonuclease V, 125 kDa subunit
VPA1266 putative ATP-dependent exoDNAse (exonuclease V), alpha subunit
VP2373 exodeoxyribonuclease V, 67 kDa subunit
VP2303 DNA polymerase III, alpha subunit
VP0012 DNA polymerase III, beta chain
VP2179 DNA polymerase III, subunits gamma and tau
VP0725 DNA polymerase III, delta subunit
VP2048 DNA polymerase III, delta prime subunit
VPA0793 hypothetical protein
VP2877 putative DNA polymerase III, epsilon subunit
VP2292 DNA polymerase III, epsilon subunit
VP1903 putative DNA polymerase III, epsilon subunit
VP1724 putative DNA polymerase III, epsilon subunit
VPA0074 putative DNA polymerase III, epsilon subunit
VP2645 DNA polymerase III, chi subunit
VP2442 DNA polymerase III, psi subunit
VP0253 primosomal protein N'
VP2739 primosomal replication protein N
VP1005 primosomal replication protein N''
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:vpa03000]
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03021 Transcription machinery [BR:vpa03021]
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03019 Messenger RNA biogenesis [BR:vpa03019]
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03041 Spliceosome
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03011 Ribosome [BR:vpa03011]
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03009 Ribosome biogenesis [BR:vpa03009]
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03016 Transfer RNA biogenesis [BR:vpa03016]
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03012 Translation factors [BR:vpa03012]
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03110 Chaperones and folding catalysts [BR:vpa03110]
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04131 Membrane trafficking [BR:vpa04131]
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04121 Ubiquitin system [BR:vpa04121]
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03051 Proteasome [BR:vpa03051]
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03032 DNA replication proteins [BR:vpa03032]
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03036 Chromosome and associated proteins [BR:vpa03036]
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03400 DNA repair and recombination proteins [BR:vpa03400]
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VPA0046 methylated-DNA-protein-cysteine S-methyltransferase
VPA1471 deoxyribodipyrimidine photolyase
VP0500 uracil-DNA glycosylase
VP2626 A/G-specific adenine glycosylase
VP2108 endonuclease III
VP0468 mutator MutT protein
VPA0204 conserved hypothetical protein
VPA0045 ada regulatory protein
VP1179 DNA-3-methyladenine glycosidase I
VP0189 formamidopyrimidine-DNA glycosylase
VP1003 exodeoxyribonuclease III
VP0498 endonuclease IV
VP0511 single-stranded-DNA-specific exonuclease RecJ
VP0800 DNA ligase
VP0107 DNA polymerase I
VP2712 excinuclease ABC, subunit A
VP2100 excinuclease ABC, subunit B
VP1944 excinuclease ABC, subunit C
VP3013 DNA helicase II
VP2922 DNA-directed RNA polymerase, beta subunit
VP2921 DNA-directed RNA polymerase, beta' subunit
VP0282 DNA-directed RNA polymerase, alpha subunit
VP0160 DNA-directed RNA polymerase, omega subunit
VP0975 transcription-repair coupling factor
VP2552 DNA mismatch repair protein MutS
VP2819 DNA mismatch repair protein MutL
VP0518 DNA mismatch repair protein MutH
VP1301 exodeoxyribonuclease I
VP0615 exodeoxyribonuclease VII, large subunit
VP0688 exodeoxyribonuclease, small subunit
VP2303 DNA polymerase III, alpha subunit
VP0012 DNA polymerase III, beta chain
VP2645 DNA polymerase III, chi subunit
VP0725 DNA polymerase III, delta subunit
VP2048 DNA polymerase III, delta prime subunit
VPA0793 hypothetical protein
VP2877 putative DNA polymerase III, epsilon subunit
VP2292 DNA polymerase III, epsilon subunit
VP1903 putative DNA polymerase III, epsilon subunit
VP1724 putative DNA polymerase III, epsilon subunit
VPA0074 putative DNA polymerase III, epsilon subunit
VP2179 DNA polymerase III, subunits gamma and tau
VP2442 DNA polymerase III, psi subunit
VP2709 single-strand binding protein
VP2742 DNA adenine methylase
VP2374 exodeoxyribonuclease V, 135 kDa subunit
VP2375 exodeoxyribonuclease V, 125 kDa subunit
VPA1266 putative ATP-dependent exoDNAse (exonuclease V), alpha subunit
VP2373 exodeoxyribonuclease V, 67 kDa subunit
VP2550 RecA protein
VP1051 holliday junction DNA helicase RuvA
VP1052 holliday junction DNA helicase RuvB
VP1048 crossover junction endodeoxyribonuclease RuvC
VP0253 primosomal protein N'
VP2739 primosomal replication protein N
VP1005 primosomal replication protein N''
VPA1022 putative exonuclease SbcC
VPA1023 putative exonuclease SbcD
VP2429 DNA repair protein RadA
VP0013 RecF protein
VP0157 ATP-dependent DNA helicase RecG
VP2570 DNA repair protein RecO
VP2177 recombination protein RecR
VP0648 DNA repair protein RecN
VP0568 conserved hypothetical protein
VP1214 helicase-related protein
VP1932 DNA gyrase, subunit A
VP0014 DNA gyrase, subunit B
VP1022 DNA topoisomerase I
VP2911 DNA-binding protein HU-2
VP0920 DNA-binding protein HU-beta
VP2885 factor-for-inversion stimulation protein
VP1294 integration host factor, alpha subunit
VP2029 integration host factor, beta subunit
VP3007 ATP-dependent DNA helicase RecQ
VP2340 putative ATP-dependent DNA helicase RecQ
VP1133 DNA-binding protein H-NS
VP2342 DNA-damage-inducible protein P
VP2945 LexA repressor
VP1946 DNA polymerase II
VP2034 hypothetical protein
VP2035 hypothetical protein
VP2036 putative DNA polymerase III alpha chain
VP2549 regulatory protein RecX
VP0041 ATP-dependent DNA helicase Rep
VPA0672 helicase IV
VP1007 ATP-dependent helicase, DinG family
VP0865 ATP-dependent helicase, DinG family
VP1934 ribonucleoside-diphosphate reductase, alpha subunit
VP1935 ribonucleoside-diphosphate reductase, beta subunit
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K19789 radD; DNA repair protein RadD
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:vpa03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Vibrio parahaemolyticus RIMD 2210633