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09100 Metabolism
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09101 Carbohydrate metabolism
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09102 Energy metabolism
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00190 Oxidative phosphorylation [PATH:vvm00190]
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00195 Photosynthesis
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00196 Photosynthesis - antenna proteins
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00710 Carbon fixation in photosynthetic organisms
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00720 Carbon fixation pathways in prokaryotes
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00680 Methane metabolism [PATH:vvm00680]
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00910 Nitrogen metabolism [PATH:vvm00910]
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00920 Sulfur metabolism [PATH:vvm00920]
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VVMO6_02719 sulfate adenylyltransferase subunit 1
VVMO6_02720 sulfate adenylyltransferase subunit 2
VVMO6_02717 adenylylsulfate kinase
VVMO6_02860 3'(2'),5'-bisphosphate nucleotidase
VVMO6_00347 phosphoadenylyl-sulfate reductase (thioredoxin)
VVMO6_00345 sulfite reductase [NADPH] flavoprotein alpha-component
VVMO6_00346 sulfite reductase [NADPH] hemoprotein beta-component
VVMO6_03628 cytochrome c553
VVMO6_04009 rhodanese-related sulfurtransferase
VVMO6_00133 thiosulfate sulfurtransferase GlpE
VVMO6_00225 serine acetyltransferase
VVMO6_02247 cysteine synthase
VVMO6_02096 cysteine synthase B
VVMO6_01726 homoserine O-succinyltransferase
VVMO6_00305 cystathionine gamma-synthase
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K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
K17230 fccA; cytochrome subunit of sulfide dehydrogenase
K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
K01738 cysK; cysteine synthase [EC:2.5.1.47]
K01738 cysK; cysteine synthase [EC:2.5.1.47]
K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
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09103 Lipid metabolism
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09104 Nucleotide metabolism
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09105 Amino acid metabolism
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09106 Metabolism of other amino acids
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09107 Glycan biosynthesis and metabolism
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09108 Metabolism of cofactors and vitamins
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09109 Metabolism of terpenoids and polyketides
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09110 Biosynthesis of other secondary metabolites
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09111 Xenobiotics biodegradation and metabolism
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09112 Not included in regular maps
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09120 Genetic Information Processing
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:vvm03000]
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03021 Transcription machinery [BR:vvm03021]
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03019 Messenger RNA biogenesis [BR:vvm03019]
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03041 Spliceosome
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03011 Ribosome [BR:vvm03011]
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03009 Ribosome biogenesis [BR:vvm03009]
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03016 Transfer RNA biogenesis [BR:vvm03016]
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VVMO6_02619 tRNA nucleotidyltransferase
VVMO6_02276 glutamyl-tRNA synthetase
VVMO6_00726 prolyl-tRNA synthetase
VVMO6_02503 isoleucyl-tRNA synthetase
VVMO6_02307 leucyl-tRNA synthetase
VVMO6_01958 methionyl-tRNA synthetase
VVMO6_02214 glutaminyl-tRNA synthetase
VVMO6_02182 arginyl-tRNA synthetase
VVMO6_02522 lysyl-tRNA synthetase (class II)
VVMO6_01023 aspartyl-tRNA synthetase
VVMO6_00502 alanyl-tRNA synthetase
VVMO6_02423 predicted metal-dependent hydrolase
VVMO6_01128 asparaginyl-tRNA synthetase
VVMO6_01276 threonyl-tRNA synthetase
VVMO6_01888 seryl-tRNA synthetase
VVMO6_01852 cysteinyl-tRNA synthetase
VVMO6_00403 valyl-tRNA synthetase
VVMO6_02427 histidyl-tRNA synthetase
VVMO6_01250 phenylalanyl-tRNA synthetase alpha chain
VVMO6_01251 phenylalanyl-tRNA synthetase beta chain
VVMO6_04246 tyrosyl-tRNA synthetase cluster 1
VVMO6_00580 tyrosyl-tRNA synthetase cluster 1
VVMO6_00254 tryptophanyl-tRNA synthetase
VVMO6_02878 D-tyrosyl-tRNA(Tyr) deacylase
VVMO6_00941 bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)
VVMO6_04274 diadenosine tetraphosphate hydrolase
VVMO6_00424 tRNA (guanine46-N7-)-methyltransferase
VVMO6_00727 uncharacterized conserved protein
VVMO6_00874 tRNA pseudouridine synthase A
VVMO6_00597 tRNA pseudouridine synthase B tRNA Psi55
VVMO6_00493 tRNA pseudouridine 13 synthase
VVMO6_02439 cysteine desulfurase IscS subfamily
VVMO6_00045 yrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA
VVMO6_02407 yrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA
VVMO6_00240 tRNA delta(2)-isopentenylpyrophosphate transferase
VVMO6_02979 GTPase and tRNA-U34 5-formylation enzyme TrmE
VVMO6_00001 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
VVMO6_02860 3'(2'),5'-bisphosphate nucleotidase
VVMO6_02976 ribonuclease P protein component
VVMO6_02036 ribonuclease T
VVMO6_02827 ribonuclease PH
VVMO6_03643 exoribonuclease II
VVMO6_02172 ribonuclease D
VVMO6_02487 ABC transporter, ATP-binding protein
VVMO6_02961 glycyl-tRNA synthetase alpha chain
VVMO6_02962 glycyl-tRNA synthetase beta chain
VVMO6_00545 glutamyl-Q-tRNA synthetase
VVMO6_02287 YbaK family protein
VVMO6_02376 tRNA-specific adenosine-34 deaminase
VVMO6_00341 tRNA dihydrouridine synthase A
VVMO6_00182 tRNA dihydrouridine synthase B
VVMO6_01103 tRNA-dihydrouridine synthase C
VVMO6_02301 tRNA-i(6)A37 methylthiotransferase
VVMO6_01021 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase
VVMO6_01020 tRNA (5-methoxyuridine) 34 synthase
VVMO6_01010 S-adenosylmethionine-dependent methyltransferase Functionally Coupled to the MukBEF Chromosome Partitioning Mechanism
VVMO6_00145 tRNA (Uracil54-C5-)-methyltransferase
VVMO6_00519 tRNA (Guanine37-N1) -methyltransferase
VVMO6_02847 tRNA (guanosine18-2'-O-) -methyltransferase
VVMO6_02441 tRNA:Cm32/Um32 methyltransferase
VVMO6_03862 predicted SAM-dependent methyltransferase
VVMO6_00201 tRNA (cytosine34-2'-O-)-methyltransferase
VVMO6_02529 predicted O-methyltransferase
VVMO6_03226 hypothetical protein
VVMO6_03141 RNA methyltransferase, TrmH family
VVMO6_00742 tRNA pseudouridine synthase C tRNA Psi65
VVMO6_03127 pseudouridylate synthase 23S RNA-specific
VVMO6_00388 ribosomal large subunit pseudouridine synthase A
VVMO6_01813 pseudouridylate synthase 23S RNA-specific
VVMO6_01870 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
VVMO6_01513 tRNA(Cytosine32)-2-thiocytidine synthetase
VVMO6_02958 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA
VVMO6_00280 tRNA 5-methylaminomethyl-2-thiouridine synthase TusB
VVMO6_00279 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC
VVMO6_00278 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD
VVMO6_01669 tRNA 2-thiouridine synthesizing protein E
VVMO6_02437 iron binding protein IscA for iron-sulfur cluster assembly
VVMO6_00464 folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress
VVMO6_01897 tRNA-(ms[2]io[6]A)-hydroxylase
VVMO6_00869 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC
VVMO6_02449 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
VVMO6_01678 queuosine Biosynthesis QueC ATPase
VVMO6_01130 queuosine biosynthesis QueD, PTPS-I
VVMO6_01679 queuosine Biosynthesis QueE Radical SAM
VVMO6_02335 NADPH dependent preQ0 reductase
VVMO6_00236 iron-sulfur cluster-binding protein
VVMO6_02448 tRNA-guanine transglycosylase
VVMO6_02348 thiamine biosynthesis protein thiI
VVMO6_00763 tRNA(Ile)-lysidine synthetase
VVMO6_04560 predicted P-loop ATPase fused to an acetyltransferase
VVMO6_02177 inactive metal-dependent proteases putative molecular chaperone
VVMO6_02625 ygjD/Kae1/Qri7 family required for threonylcarbamoyladenosine (t(6)A) formation in tRNA
VVMO6_00237 ATPase YjeE, predicted to have essential role in cell wall biosynthesis
VVMO6_00694 hesA/MoeB/ThiF family protein-like EC-YgdL
VVMO6_00251 3'-to-5' exoribonuclease RNase R
VVMO6_00605 polyribonucleotide nucleotidyltransferase
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K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
K03683 rnt; ribonuclease T [EC:3.1.13.-]
K00989 rph; ribonuclease PH [EC:2.7.7.56]
K01147 rnb; exoribonuclease II [EC:3.1.13.1]
K03684 rnd; ribonuclease D [EC:3.1.13.5]
K06020 ettA; energy-dependent translational throttle protein EttA
K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257]
K03437 spoU; RNA methyltransferase, TrmH family
K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
K07237 tusB; tRNA 2-thiouridine synthesizing protein B
K07236 tusC; tRNA 2-thiouridine synthesizing protein C
K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
K13628 iscA; iron-sulfur cluster assembly protein
K06980 ygfZ; tRNA-modifying protein YgfZ
K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
K12573 rnr; ribonuclease R [EC:3.1.13.1]
K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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03012 Translation factors [BR:vvm03012]
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03110 Chaperones and folding catalysts [BR:vvm03110]
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04131 Membrane trafficking [BR:vvm04131]
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04121 Ubiquitin system [BR:vvm04121]
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03051 Proteasome [BR:vvm03051]
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03032 DNA replication proteins [BR:vvm03032]
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03036 Chromosome and associated proteins [BR:vvm03036]
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03400 DNA repair and recombination proteins [BR:vvm03400]
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03029 Mitochondrial biogenesis [BR:vvm03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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