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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:ypa03030]
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03410 Base excision repair [PATH:ypa03410]
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03420 Nucleotide excision repair [PATH:ypa03420]
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03430 Mismatch repair [PATH:ypa03430]
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03440 Homologous recombination [PATH:ypa03440]
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 YPA_0379 exonuclease RecJ
YPA_3960 single-strand binding protein
YPA_4141 DNA replication and repair protein RecF
YPA_2454 DNA replication and repair protein RecO
YPA_2614 DNA replication and repair protein RecR
YPA_2838 RecA protein
YPA_3525 DNA polymerase I
YPA_1440 Holliday junction DNA helicase subunit RuvA
YPA_1441 Holliday junction DNA helicase subunit RuvB
YPA_1438 Holliday junction endonuclease RuvC
YPA_3506 ATP-dependent DNA helicase RecG
YPA_0492 DNA helicase/exodeoxyribonuclease V, beta subunit
YPA_0490 DNA helicase/exodeoxyribonuclease V, gamma subunit
YPA_0493 DNA helicase/exodeoxyribonuclease V, alpha subunit
YPA_MT0059 DNA polymerase III
YPA_0535 DNA polymerase III, alpha subunit
YPA_4142 DNA polymerase III, beta subunit
YPA_2616 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
YPA_2489 DNA polymerase III, delta subunit
YPA_1919 DNA polymerase III, delta prime subunit
YPA_0560 DNA polymerase III, epsilon subunit
YPA_1157 DNA polymerase III, theta subunit
YPA_2943 DNA polymerase III, chi subunit
YPA_3856 DNA polymerase III, psi subunit
YPA_0259 replication restart DNA helicase PriA
YPA_0088 restart primosome assembly protein PriB
YPA_2619 restart primosome assembly protein PriC
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:ypa03000]
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03021 Transcription machinery [BR:ypa03021]
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03019 Messenger RNA biogenesis [BR:ypa03019]
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03041 Spliceosome
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03011 Ribosome [BR:ypa03011]
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03009 Ribosome biogenesis [BR:ypa03009]
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03016 Transfer RNA biogenesis [BR:ypa03016]
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03012 Translation factors [BR:ypa03012]
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03110 Chaperones and folding catalysts [BR:ypa03110]
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04131 Membrane trafficking [BR:ypa04131]
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04121 Ubiquitin system [BR:ypa04121]
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03051 Proteasome [BR:ypa03051]
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03032 DNA replication proteins [BR:ypa03032]
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03036 Chromosome and associated proteins [BR:ypa03036]
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03400 DNA repair and recombination proteins [BR:ypa03400]
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YPA_1648 putative methylated-DNA--protein-cysteine methyltransferase
YPA_2426 Deoxyribodipyrimidine photo-lyase type I
YPA_2437 Uracil-DNA glycosylase
YPA_0312 A/G-specific DNA-adenine glycosylase
YPA_1598 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
YPA_3536 mutator protein MutT
YPA_3495 deoxyuridine 5'-triphosphate nucleotidohydrolase
YPA_3471 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada
YPA_1210 putative glycosidase
YPA_3010 DNA-3-methyladenine glycosylase I
YPA_3490 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
YPA_1525 Exodeoxyribonuclease III
YPA_1023 Endonuclease IV
YPA_3606 Endonuclease V
YPA_0379 exonuclease RecJ
YPA_3501 putative DNA ligase
YPA_2178 DNA ligase
YPA_3525 DNA polymerase I
YPA_3961 Excinuclease ABC subunit A
YPA_1063 Excinuclease ABC subunit B
YPA_1244 Excinuclease ABC subunit C
YPA_0181 ATP-dependent DNA helicase UvrD
YPA_3619 DNA-directed RNA polymerase beta chain
YPA_3618 DNA-directed RNA polymerase beta' chain
YPA_3239 DNA-directed RNA polymerase alpha chain
YPA_3503 DNA-directed RNA polymerase, omega chain
YPA_1900 transcription-repair coupling factor
YPA_2789 DNA mismatch repair protein MutS
YPA_3913 DNA mismatch repair protein MutL
YPA_0481 DNA mismatch repair protein MutH
YPA_0853 Exodeoxyribonuclease I subunit C
YPA_2313 Exodeoxyribonuclease VII large subunit
YPA_2669 Exodeoxyribonuclease VII small subunit
YPA_MT0059 DNA polymerase III
YPA_0535 DNA polymerase III, alpha subunit
YPA_4142 DNA polymerase III, beta subunit
YPA_2943 DNA polymerase III, chi subunit
YPA_2489 DNA polymerase III, delta subunit
YPA_1919 DNA polymerase III, delta prime subunit
YPA_0560 DNA polymerase III, epsilon subunit
YPA_2616 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
YPA_3856 DNA polymerase III, psi subunit
YPA_1157 DNA polymerase III, theta subunit
YPA_3960 single-strand binding protein
YPA_3315 DNA adenine methylase Dam
YPA_0492 DNA helicase/exodeoxyribonuclease V, beta subunit
YPA_0490 DNA helicase/exodeoxyribonuclease V, gamma subunit
YPA_0493 DNA helicase/exodeoxyribonuclease V, alpha subunit
YPA_2838 RecA protein
YPA_1440 Holliday junction DNA helicase subunit RuvA
YPA_1441 Holliday junction DNA helicase subunit RuvB
YPA_1438 Holliday junction endonuclease RuvC
YPA_0259 replication restart DNA helicase PriA
YPA_0088 restart primosome assembly protein PriB
YPA_2619 restart primosome assembly protein PriC
YPA_2700 hypothetical protein
YPA_2699 Exodeoxyribonuclease I subunit D
YPA_3841 DNA repair protein RadA
YPA_4141 DNA replication and repair protein RecF
YPA_3506 ATP-dependent DNA helicase RecG
YPA_2454 DNA replication and repair protein RecO
YPA_2614 DNA replication and repair protein RecR
YPA_0583 DNA repair protein RecN
YPA_2705 recombination associated protein RdgC
YPA_1965 CRISPR-associated protein, Cas1 family
YPA_0983 putative DEAD box helicase family protein
YPA_3301 hypothetical protein
YPA_0930 DNA gyrase subunit A
YPA_4140 DNA gyrase subunit B
YPA_1577 DNA topoisomerase I
YPA_3604 bacterial nucleoid protein HU alpha subunit
YPA_2649 bacterial nucleoid protein HU beta subunit
YPA_3666 DNA-binding protein Fis
YPA_1771 integration host factor alpha-subunit
YPA_0684 integration host factor beta-subunit
YPA_0189 ATP-dependent DNA helicase RecQ
YPA_1533 nucleoid protein H-NS
YPA_2721 DNA-damage-inducible protein P
YPA_3970 SOS-response transcriptional repressor, LexA
YPA_3577 DNA damage-inducible DNA polymerase II
YPA_1941 DNA-damage-inducible protein I
YPA_2839 putative regulatory protein
YPA_0146 ATP-dependent DNA helicase Rep
YPA_0732 putative helicase IV
YPA_0920 putative ATP-dependent helicase DinG
YPA_1454 putative DEAD box family helicase
YPA_0928 ribonucleoside-diphosphate reductase class Ia alpha subunit
YPA_2377 ribonucleoside-diphosphate reductase class Ib alpha subunit
YPA_0927 ribonucleoside-diphosphate reductase class Ia beta subunit
YPA_2376 ribonucleoside-diphosphate reductase class Ib beta subunit
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:ypa03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Yersinia pestis Antiqua (biovar Antiqua)