y3274 recJ; ssDNA exonuclease
       y0582 ssb; ssDNA-binding protein
       y4111 recF; ssDNA and dsDNA binding protein
       y1299 recO; recO protein
       y1062 recR; recombination and repair protein
       y0881 recA; DNA-dependent ATPase, DNA- and ATP-dependent coprotease
       y3811 polA; DNA polymerase I
       y2253 ruvA; Holliday junction helicase subunit B
       y2252 ruvB; Holliday junction helicase subunit A
       y2254 ruvC; Holliday junction nuclease
       y0105 recG; DNA helicase
       y3164 recB; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease
       y3166 recC; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease
       y3163 recD; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease
       y3120 dnaE; DNA polymerase III, alpha subunit
       Y1106.pl putative DNA polymerase III, alpha subunit
       y4112 dnaN; DNA polymerase III, beta-subunit
       y1060 dnaX; DNA polymerase III, tau and gamma subunits
       y1182 holA; DNA polymerase III, delta subunit
       y1765 holB; DNA polymerase III, delta prime subunit
       y3094 dnaQ; DNA polymerase III, epsilon subunit
       y2525 holE; DNA polymerase III, theta subunit
       y0745 holC; DNA polymerase III, chi subunit
       y3752 holD; DNA polymerase III, psi subunit
       y0298 priA; primosomal protein N'
       y1056 putative primosomal replication protein N

K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''

       y2131 ogt; O-6-alkylguanine-DNA/cysteine-protein methyltransferase
       y1270 phrB; deoxyribodipyrimidine photolyase (photoreactivation)
       y1281 ung; uracil-DNA-glycosylase
       y3339 mutY; adenine glycosylase
       y2080 nth; endonuclease III
       y3616 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase
       y0094 dut; deoxyuridinetriphosphatase
       y0070 ada; O6-methylguanine-DNA methyltransferase; transcription activator/repressor
       y2473 putative DNA repair enzyme
       y4091 tag; 3-methyl-adenine DNA glycosylase I
       y0090 mutM; formamidopyrimidine DNA glycosylase
       y2153 xthA; exonuclease III
       y2879 nfo; endonuclease IV
       y0497 nfi; endonuclease V (deoxyinosine 3'endoduclease)
       y3274 recJ; ssDNA exonuclease
       y1492 lig; DNA ligase
       y0100 putative enzyme
       y3811 polA; DNA polymerase I
       y0580 uvrA; excision nuclease subunit A
       y3026 uvrB; excision nuclease subunit B
       y2442 uvrC; excinuclease ABC, subunit C
       y0389 uvrD; DNA-dependent ATPase I and helicase II
       y0484 rpoB; RNA polymerase, beta subunit
       y0485 rpoC; RNA polymerase, beta prime subunit
       y4015 rpoA; RNA polymerase, alpha subunit
       y0102 rpoZ; RNA polymerase, omega subunit
       y1784 mfd; transcription-repair coupling factor
       y0835 mutS; methyl-directed mismatch repair protein
       y0628 mutL; DNA mismatch repair protein
       y3175 mutH; methyl-directed mismatch repair protein
       y2610 sbcB; exonuclease I
       y1361 xseA; exonuclease VII, large subunit
       y1010 xseB; exonuclease VII, small subunit
       y3120 dnaE; DNA polymerase III, alpha subunit
       Y1106.pl putative DNA polymerase III, alpha subunit
       y4112 dnaN; DNA polymerase III, beta-subunit
       y0745 holC; DNA polymerase III, chi subunit
       y1182 holA; DNA polymerase III, delta subunit
       y1765 holB; DNA polymerase III, delta prime subunit
       y3094 dnaQ; DNA polymerase III, epsilon subunit
       y1060 dnaX; DNA polymerase III, tau and gamma subunits
       y3752 holD; DNA polymerase III, psi subunit
       y2525 holE; DNA polymerase III, theta subunit
       y0582 ssb; ssDNA-binding protein
       y3937 dam; DNA adenine methylase
       y2224 putative DNA methyltransferase
       y3164 recB; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease
       y3166 recC; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease
       y3163 recD; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease
       y0881 recA; DNA-dependent ATPase, DNA- and ATP-dependent coprotease
       y2253 ruvA; Holliday junction helicase subunit B
       y2252 ruvB; Holliday junction helicase subunit A
       y2254 ruvC; Holliday junction nuclease
       y0298 priA; primosomal protein N'
       y1056 putative primosomal replication protein N
       y0976 sbcC; ATP-dependent dsDNA exonuclease
       y0977 sbcD; ATP-dependent dsDNA exonuclease
       y3737 sms; probable ATP-dependent protease
       y4111 recF; ssDNA and dsDNA binding protein
       y0105 recG; DNA helicase
       y1299 recO; recO protein
       y1062 recR; recombination and repair protein
       y3075 recN; DNA repair protein
       y0974 hypothetical protein
       y1722 hypothetical
       y2919 putative ATP-dependent helicase
       y3952 hypothetical protein
       y2972 gyrA; DNA gyrase, subunit A, type II topoisomerase
       y4110 gyrB; DNA gyrase subunit B, type II topoisomerase
       y2060 topA; DNA topoisomerase type I, omega protein
       y0499 hupA; DNA-binding protein HU-alpha (HU-2)
       y1030 hupB; DNA-binding protein HU-beta, NS1 (HU-1)
       y0214 fis; site-specific DNA inversion stimulation factor
       y1910 himA; integration host factor (IHF), alpha subunit
       y2779 himD; integration host factor (IHF), beta subunit
       y0397 recQ; ATP-dependent DNA helicase
       y2146 hns; DNA-binding protein HLP-II (HU, BH2, HD, NS)
       y0959 dinP; damage-inducible protein P; putative tRNA synthetase
       y0572 lexA; regulator for SOS(lexA) regulon
       y3655 polB; DNA polymerase II
       y1747 dinI; damage-inducible protein I
       y0882 oraA; regulator, OraA protein
       y0356 rep; rep helicase, a single-stranded DNA dependent ATPase
       y2730 helD; DNA helicase IV
       y2982 dinG; probably ATP-dependent helicase
       y2239 putative enzyme
       y1223 nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit
       y2974 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit, B1
       y1222 nrdF; ribonucleoside-diphosphate reductase 2, beta chain, frag
       y2975 nrdB; ribonucleoside-diphosphate reductase 1, beta subunit, B2

K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]