DNA Repair and Recombination Proteins - Yersinia pestis Pestoides F (biovar Antiqua)

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     KO
 Eukaryotic type
 
 Prokaryotic type
   SSBR (single strand breaks repair)
   DSBR (double strand breaks repair)
     HR (homologous recombination)
       RecBC pathway proteins
         YPDSF_1695 DNA helicase/exodeoxyribonuclease V, beta subunit
         YPDSF_1697 DNA helicase/exodeoxyribonuclease V, gamma subunit
         YPDSF_1694 DNA helicase/exodeoxyribonuclease V, alpha subunit
         YPDSF_3054 RecA protein
         YPDSF_1065 Holliday junction DNA helicase subunit RuvA
         YPDSF_1064 Holliday junction DNA helicase subunit RuvB
         YPDSF_1066 Holliday junction endonuclease RuvC
         YPDSF_3797 replication restart DNA helicase PriA
         YPDSF_2762 restart primosome assembly protein PriC
         YPDSF_1418 Exodeoxyribonuclease I subunit C
         YPDSF_2840 hypothetical protein
         YPDSF_2839 Exodeoxyribonuclease I subunit D
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] 
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] 
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] 
K03553 recA; recombination protein RecA 
K03550 ruvA; holliday junction DNA helicase RuvA 
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] 
K04067 priC; primosomal replication protein N'' 
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] 
K03546 sbcC; DNA repair protein SbcC/Rad50 
K03547 sbcD; DNA repair protein SbcD/Mre11 
       RecFOR pathway proteins
         YPDSF_3054 RecA protein
         YPDSF_3191 DNA repair protein RadA
         YPDSF_0003 DNA replication and repair protein RecF
         YPDSF_3869 ATP-dependent DNA helicase RecG
         YPDSF_0626 exonuclease RecJ
         YPDSF_1551 DNA replication and repair protein RecO
         YPDSF_2757 DNA replication and repair protein RecR
         YPDSF_2592 DNA repair protein RecN
         YPDSF_2842 recombination associated protein RdgC
         YPDSF_1065 Holliday junction DNA helicase subunit RuvA
         YPDSF_1064 Holliday junction DNA helicase subunit RuvB
         YPDSF_1066 Holliday junction endonuclease RuvC
K03553 recA; recombination protein RecA 
K04485 radA; DNA repair protein RadA/Sms 
K03629 recF; DNA replication and repair protein RecF 
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] 
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
K03584 recO; DNA repair protein RecO (recombination protein O) 
K06187 recR; recombination protein RecR 
K03631 recN; DNA repair protein RecN (Recombination protein N) 
K03554 rdgC; recombination associated protein RdgC 
K03550 ruvA; holliday junction DNA helicase RuvA 
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
       AddAB pathway proteins
       Other HR factor
       Archaeal homologous recombinant proteins
     NHEJ (non-homologous end-joining)
   TLS (translesion DNA synthesis) factors
   Other factors with a suspected DNA repair function

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Last updated: March 29, 2024